LOC110488101


Basic Information

Item Value
gene id LOC110488101
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 22191696 ~ 22222102 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971813.1
GTAAATCACGTGATGGTGACTAAACGACTGTTTGGCTGTTGACTTTCATTTTCATCTTTGCAACTTCCTCAAAAATGGACGCCAAAAAGCAGAAGAAGGCAGAAGAACTTCTATTGGCTGAAGAAAGTTTTAGGACAAATGCCTTCAGAATCATCAATATAATGATTGAACTATGCAAAGACAAGCCTGGCTGTAGGGTGCATGTGGATGAGATTCTCCACAGCATCTTCTTCTTAGGTTTCATTCATAGACCCCAACAATGCACCCCCAACGATATCCTTGGTGAACTTAGGCCTAAAGTGGAGGAGATTTTCCCGAGACCATTTGTGAATTACACAAGTAAACTGCCAAAACGGACTCCGTTCTCCTCTGTGCTGGATATGGTGGTCTCCTTGCttggaccagacagagagatcaaTATACTGGAGAGACTGAAGGAAATCGCCAATGTCATGTCAGAATCCAAGAGTACATACCAGTTTACCTCCTCAACCATCTGTGTCTCTCGAAGGAATGATGTTGAAAGAAGTTACTATGGAGTGTCCATGTCCTGCAAAGGGAAGCAAGAAGGACAGATCATGGTTGCTGTGTCCTGTCTGAGTACCTGGCACAGCGGTGTATCCAATGCCGTGATGACATACGACCCAATCAGCAAGATGAAGAGAGTGAACTTCGACCACACCTTCAATCTACCAAAGAATTTCAGGTGCCAGGCTTTCAATGTGAAGTCTGGGGCCAAGATGTATCCTTGCAAATCATGTCATAATCTGTTTGGCCTTGAGACAAGAGAAACAGAAACGCAGATATGGCCCTACGGGAACTGCGCCGAGGCAGAGAGCTTGAGCAAACTGTTCGATGGAGAGGGATTTGATGCTAGTAGAGTAGTAGATCACAAGGTGCGAAGGCAGGTGGAAGAGTTGGTAAACGCTGACCTGCAAACAAAACTCGAGTCTATTGGATATGAATGGGATGGTGACTATTACATTCCACTGTACATTgaaacattgccaaagcagtGAACCACTCTGTgcatgtagtatacagtataactGCTAGGCTATAGCTATCGGCTCTTATCAATGACATCTGTGAAGTAGATGGTTATTTTAGTGGGGGACTTTGAGAACTTACAGTCAACAAAATAAAAGTTAGATAGTCAGGCCCCCATTGATCTTGTTATAATGTTTTAGCATAAGAATACAGCTTTAGCCTTGTAAAATGCAGGTATTTGCAGGAAATGTGCTTAAAAACGACAAAAAATTGCTCTCAgttccatggcaaaatgtatagaatggcaggaaattagctttcaaATAAAATGTTCTCTACACCAACCCATATGGTGGGTTGTGACTCAAAAGTCACCTCCATTTGTGTTTCACAAAGCCAAAAAGTTTGGAAATCCCTGGTTGGAAACCTCGATGGAGATACTGTATTATTCATCATTTGTATGCTGTATTTAATTGAATACTCTAGACAAAGAATTTTACATTAAacgtgtatttttttaaattgattttaaACTTTACTTCTACTGTAAGCATTGATGCACATCTTACTCATCTGTAACAAATTACCAATACTTTAACCGTTGGTGTGAATTAATGTCTGGGTTGACTAACATGTGAGGAATAAAGGAGACTATGATAAA
>XM_021560119.2
TAAATCACGTGATGGTGACTAAACGACTGTTTGGCTGTTGACTTTCATTTTCATCTTTGCAACTTCCTCAAAAATGGACGCCAAAAAGCAGAAGAAGGCAGAAGAACTTCTATTGGCTGAAGAAAGTTTTAGGACAAATGCCTTCAGAATCATCAATATAATGATTGAACTATGCAAAGACAAGCCTGGCTGTAGGGTGCATGTGGATGAGATTCTCCACAGCATCTTCTTCTTAGGTTTCATTCATAGACCCCAACAATGCACCCCCAACGATATCCTTGGTGAACTTAGGCCTAAAGTGGAGGAGATTTTCCCGAGACCATTTGTGAATTACACAAGTAAACTGCCAAAACGGACTCCGTTCTCCTCTGTGCTGGATATGGTGGTCTCCTTGCttggaccagacagagagatcaaTATACTGGAGAGACTGAAGGAAATCGCCAATGTCATGTCAGAATCCAAGAGTACATACCAGTTTACCTCCTCAACCATCTGTGTCTCTCGAAGGAATGATGTTGAAAGAAGTTACTATGGAGTGTCCATGTCCTGCAAAGGGAAGCAAGAAGGACAGATCATGGTTGCTGTGTCCTGTCTGAGTACCTGGCACAGCGGTGTATCCAATGCCGTGATGACATACGACCCAATCAGCAAGATGAAGAGAGTGAACTTCGACCACACCTTCAATCTACCAAAGAATTTCAGGTGCCAGGCTTTCAATGTGAAGTCTGGGGCCAAGATGTATCCTTGCAAATCATGTCATAATCTGTTTGGCCTTGAGACAAGAGAAACAGAAACGCAGATATGGCCCTACGGGAACTGCGCCGAGGCAGAGAGCTTGAGCAAACTGTTCGATGGAGAGGGATTTGATGCTAGTAGAGTAGTAGATCACAAGGTGCGAAGGCAGGTGGAAGAGTTGGTAAACGCTGACCTGCAAACAAAACTCGAGTCTATTGGATATGAATGGGATGGTGACTATTACATTCCACTGTACATTgaaacattgccaaagcagtGAACCACTCTGTgcatgtagtatacagtataactGCTAGGCTATAGCTATCGGCTCTTATCAATGACATCTGTGAGGTAGATTGTTCTTTTAGAAGGGGACCGTTGTTTAGAGTACCTCATGGAGATACCTGAAATTGAATTTAATATTCTAGTCTAGACAAAGCAtttaacatatatatatttttaaagatgaTTTTAATTGGGATTTTAAACTTTATTTCTGTATACTCTAGTTATTAATGCACATTTTTACTCATCTGTAACAAATTACTAATACTGTAAACGTTGGTGTGAATTCATGTCTGGGTTGATTTCTAGCTATGTGAGGAATTCATCTAATAAAGGAACTTACATTGTAACCATTGTAA

Function

NR:

description
uncharacterized protein LOC110488101

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971813.1 False 1651 mRNA 0.41 6 22191696 22222102
XM_021560119.2 True 1385 mRNA 0.41 5 22191697 22194477

Neighbor

gene id symbol gene type direction distance location
LOC110488098 LOC106570353 coding upstream 30005 22133277 ~ 22161691 (+)
LOC110488097 LOC106570356 coding upstream 61655 22112030 ~ 22130041 (+)
LOC118946490 NA coding upstream 141335 22049096 ~ 22050469 (+)
LOC110488094 LOC106570360 coding upstream 240707 21948384 ~ 21950989 (+)
edn1 LOC106570392 coding upstream 351870 21836308 ~ 21839826 (+)
c32h5orf49 cssa14h5orf49 coding downstream 183869 22405971 ~ 22416346 (+)
LOC118936411 NA coding downstream 330384 22552486 ~ 22565890 (+)
LOC118946522 NA coding downstream 344599 22566701 ~ 22572442 (+)
LOC110488106 NA coding downstream 351147 22573249 ~ 22579988 (+)
LOC110488108 LOC106588698 coding downstream 408080 22630182 ~ 22646620 (+)
G2307767 NA non-coding upstream 16290 22174993 ~ 22175406 (+)
G2306912 NA non-coding upstream 489544 21701705 ~ 21702152 (+)
G2306892 NA non-coding upstream 516415 21674986 ~ 21675281 (+)
G2306890 NA non-coding upstream 520307 21671151 ~ 21671389 (+)
G2307792 NA non-coding downstream 4184 22226286 ~ 22230151 (+)
G2307779 LOC106570344 non-coding downstream 35034 22257136 ~ 22259964 (+)
G2307812 LOC106570344 non-coding downstream 48012 22270114 ~ 22272124 (+)
G2307829 NA non-coding downstream 66869 22288971 ~ 22296379 (+)
G2307876 NA non-coding downstream 147077 22369179 ~ 22428002 (+)
G2306825 NA other upstream 604262 21587088 ~ 21587434 (+)
G2306688 NA other upstream 867800 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 879818 21307432 ~ 21311878 (+)
G2306173 LOC106570399 other upstream 1377398 20813189 ~ 20814298 (+)
G2305956 NA other upstream 1638012 20553333 ~ 20553684 (+)
G2308224 NA other downstream 382218 22604320 ~ 22604721 (+)
LOC110488133 NA other downstream 1757248 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 1929585 24151527 ~ 24157473 (+)
G2311528 NA other downstream 3513092 25735194 ~ 25736847 (+)

Expression


Co-expression Network