LOC110488102 (LOC106570350)


Basic Information

Item Value
gene id LOC110488102
gene name LOC106570350
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 22214554 ~ 22222102 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971812.1
ctccacctgatagctgatgtgtggtgagcgTTCTGGCACAAAAATGGTTGCCATGCATCATTGAGGTGGGTGCTACGCATTGTTGGTGGATGTGGAGACCGGACTACGAGAAAGggcaGAATTGTTTTTGCTGACTGAAGACAGTTTTAGGAGTAATGCCTACAATATCATCTGTGAAATGGACAAACTACAGGGACCTAAAGAATATGTGGATGAGATGCTCCACAGCATCTTCTTCTTAGGCTGGATTCATTCCCCCAAATACACCCCCGAGATGATCCTTGGTAACCATTTATCTACGATGATGAAGATATTCCCACAACCGTTTGAGAGTTACACAAGGAAACTACCAAAACGGACTCCGTTCTCCTGTGTGCTGGATATGGTGGTCTCCATGTTTGGACCAGACAATGAGTTGGAAATATGGCGGAAACTACGGGATATCGCCAATGTCATGTCAGGGAAACACCGGTTCACCTCCTCTACCATCTGCATCTCTGAAAGTGGAGGGAGGTACTATGGAGCGTCCATGTCCTGCACGGGGAAGAAAGAGGGACAGATTATGATcgctgtgtcctgtctgtgtacCTGGCACTACAGTGTATCCAATGCCGTGATGACATACAAGCCAGATAAGAACAAGAGAAAGAACTTTGATGGCACCATGAAACTACAAGAGTATGTAAAGTGCCAGGCTTCCAATGTGAAGAGTGGGGAGGAGATGCCTCCTTGCAGGTCCTGTGGTAATCTTTTTGGTCTGGAGAAACCAAGCAATCAGATGTGGCCCTATGGGAACTGCGCAGAGGCAGAGAGCTTGAGCAAACTGCTCTATGGAGAGGAAGAGATTGTTAAGAAAGTAGTACCATCAGTTGATTGCAAAATGCGAGAGCAAGTGGTGAAGGAGGGTAAAGGCTCACCTGGAAGAGAAGCTCCAAGAGTCAGAATTTCAATGGGATTCTTCCTATTACATTCCACAGTAGATTGTCAGAGAAACGCAtgtgcgcacacgcacacacacactaagtttACAGATATACAGATGCACATTCCTACTGTGACACACAGAtccaaaacatgaaacatataaTCATAGCTTGGTGCGGGGCTAGCAACATGTGATTTGTGGCTGACAGTTAGCATTgaaacattgccaaagcagtGAACCACTCTGTgcatgtagtatacagtataactGCTAGGCTATAGCTATCGGCTCTTATCAATGACATCTGTGAAGTAGATGGTTATTTTAGTGGGGGACTTTGAGAACTTACAGTCAACAAAATAAAAGTTAGATAGTCAGGCCCCCATTGATCTTGTTATAATGTTTTAGCATAAGAATACAGCTTTAGCCTTGTAAAATGCAGGTATTTGCAGGAAATGTGCTTAAAAACGACAAAAAATTGCTCTCAgttccatggcaaaatgtatagaatggcaggaaattagctttcaaATAAAATGTTCTCTACACCAACCCATATGGTGGGTTGTGACTCAAAAGTCACCTCCATTTGTGTTTCACAAAGCCAAAAAGTTTGGAAATCCCTGGTTGGAAACCTCGATGGAGATACTGTATTATTCATCATTTGTATGCTGTATTTAATTGAATACTCTAGACAAAGAATTTTACATTAAacgtgtatttttttaaattgattttaaACTTTACTTCTACTGTAAGCATTGATGCACATCTTACTCATCTGTAACAAATTACCAATACTTTAACCGTTGGTGTGAATTAATGTCTGGGTTGACTAACATGTGAGGAATAAAGGAGACTATGATAAA
>XM_021560120.2
AACTAGGCTATTATGCCTTAGACGATTTACTTTCATTTTCATATTTACAACTACCTAAAAAATGGAGACCGGACTACGAGAAAGggcaGAATTGTTTTTGCTGACTGAAGACAGTTTTAGGAGTAATGCCTACAATATCATCTGTGAAATGGACAAACTACAGGGACCTAAAGAATATGTGGATGAGATGCTCCACAGCATCTTCTTCTTAGGCTGGATTCATTCCCCCAAATACACCCCCGAGATGATCCTTGGTAACCATTTATCTACGATGATGAAGATATTCCCACAACCGTTTGAGAGTTACACAAGGAAACTACCAAAACGGACTCCGTTCTCCTGTGTGCTGGATATGGTGGTCTCCATGTTTGGACCAGACAATGAGTTGGAAATATGGCGGAAACTACGGGATATCGCCAATGTCATGTCAGGGAAACACCGGTTCACCTCCTCTACCATCTGCATCTCTGAAAGTGGAGGGAGGTACTATGGAGCGTCCATGTCCTGCACGGGGAAGAAAGAGGGACAGATTATGATcgctgtgtcctgtctgtgtacCTGGCACTACAGTGTATCCAATGCCGTGATGACATACAAGCCAGATAAGAACAAGAGAAAGAACTTTGATGGCACCATGAAACTACAAGAGTATGTAAAGTGCCAGGCTTCCAATGTGAAGAGTGGGGAGGAGATGCCTCCTTGCAGGTCCTGTGGTAATCTTTTTGGTCTGGAGAAACCAAGCAATCAGATGTGGCCCTATGGGAACTGCGCAGAGGCAGAGAGCTTGAGCAAACTGCTCTATGGAGAGGAAGAGATTGTTAAGAAAGTAGTACCATCAGTTGATTGCAAAATGCGAGAGCAAGTGGTGAAGGAGGGTAAAGGCTCACCTGGAAGAGAAGCTCCAAGAGTCAGAATTTCAATGGGATTCTTCCTATTACATTCCACAGTAGATTGTCAGAGAAACGCAtgtgcgcacacgcacacacacactaagtttACAGATATACAGATGCACATTCCTACTGTGACACACAGAtccaaaacatgaaacatataaTCATAGCTTGGTGCGGGGCTAGCAACATGTGATTTGTGGCTGACAGTTAGCATTgaaacattgccaaagcagtGAACCACTCTGTgcatgtagtatacagtataactGCTAGGCTATAGCTATCGGCTCTTATCAATGACATCTGTGAAGTAGATGGTTATTTTAGTGGGGGACTTTGAGAACTTACAGTCAACAAAATAAAAGTTAGATAGTCAGGCCCCCATTGATCTTGTTATAATGTTTTAGCATAAGAATACAGCTTTAGCCTTGTAAAATGCAGGTATTTGCAGGAAATGTGCTTAAAAACGACAAAAAATTGCTCTCAgttccatggcaaaatgtatagaatggcaggaaattagctttcaaATAAAATGTTCTCTACACCAACCCATATGGTGGGTTGTGACTCAAAAGTCACCTCCATTTGTGTTTCACAAAGCCAAAAAGTTTGGAAATCCCTGGTTGGAAACCTCGATGGAGATACTGTATTATTCATCATTTGTATGCTGTATTTAATTGAATACTCTAGACAAAGAATTTTACATTAAacgtgtatttttttaaattgattttaaACTTTACTTCTACTGTAAGCATTGATGCACATCTTACTCATCTGTAACAAATTACCAATACTTTAACCGTTGGTGTGAATTAATGTCTGGGTTGACTAACATGTGAGGAATAAAGGAGACTATGATAAA
>XM_021560121.2
AACTAGGCTATTATGCCTTAGACGATTTACTTTCATTTTCATATTTACAACTACCTAAAAAATGGAGACCGGACTACGAGAAAGggcaGAATTGTTTTTGCTGACTGAAGACAGTTTTAGGAGTAATGCCTACAATATCATCTGTGAAATGGACAAACTACAGGGACCTAAAGAATATGTGGATGAGGTATGCATGTACCCCTTTGAAGACAAAGATGCTCCACAGCATCTTCTTCTTAGGCTGGATTCATTCCCCCAAATACACCCCCGAGATGATCCTTGGTAACCATTTATCTACGATGATGAAGATATTCCCACAACCGTTTGAGAGTTACACAAGGAAACTACCAAAACGGACTCCGTTCTCCTGTGTGCTGGATATGGTGGTCTCCATGTTTGGACCAGACAATGAGTTGGAAATATGGCGGAAACTACGGGATATCGCCAATGTCATGTCAGGGAAACACCGGTTCACCTCCTCTACCATCTGCATCTCTGAAAGTGGAGGGAGGTACTATGGAGCGTCCATGTCCTGCACGGGGAAGAAAGAGGGACAGATTATGATcgctgtgtcctgtctgtgtacCTGGCACTACAGTGTATCCAATGCCGTGATGACATACAAGCCAGATAAGAACAAGAGAAAGAACTTTGATGGCACCATGAAACTACAAGAGTATGTAAAGTGCCAGGCTTCCAATGTGAAGAGTGGGGAGGAGATGCCTCCTTGCAGGTCCTGTGGTAATCTTTTTGGTCTGGAGAAACCAAGCAATCAGATGTGGCCCTATGGGAACTGCGCAGAGGCAGAGAGCTTGAGCAAACTGCTCTATGGAGAGGAAGAGATTGTTAAGAAAGTAGTACCATCAGTTGATTGCAAAATGCGAGAGCAAGTGGTGAAGGAGGGTAAAGGCTCACCTGGAAGAGAAGCTCCAAGAGTCAGAATTTCAATGGGATTCTTCCTATTACATTCCACAGTAGATTGTCAGAGAAACGCAtgtgcgcacacgcacacacacactaagtttACAGATATACAGATGCACATTCCTACTGTGACACACAGAtccaaaacatgaaacatataaTCATAGCTTGGTGCGGGGCTAGCAACATGTGATTTGTGGCTGACAGTTAGCATTgaaacattgccaaagcagtGAACCACTCTGTgcatgtagtatacagtataactGCTAGGCTATAGCTATCGGCTCTTATCAATGACATCTGTGAAGTAGATGGTTATTTTAGTGGGGGACTTTGAGAACTTACAGTCAACAAAATAAAAGTTAGATAGTCAGGCCCCCATTGATCTTGTTATAATGTTTTAGCATAAGAATACAGCTTTAGCCTTGTAAAATGCAGGTATTTGCAGGAAATGTGCTTAAAAACGACAAAAAATTGCTCTCAgttccatggcaaaatgtatagaatggcaggaaattagctttcaaATAAAATGTTCTCTACACCAACCCATATGGTGGGTTGTGACTCAAAAGTCACCTCCATTTGTGTTTCACAAAGCCAAAAAGTTTGGAAATCCCTGGTTGGAAACCTCGATGGAGATACTGTATTATTCATCATTTGTATGCTGTATTTAATTGAATACTCTAGACAAAGAATTTTACATTAAacgtgtatttttttaaattgattttaaACTTTACTTCTACTGTAAGCATTGATGCACATCTTACTCATCTGTAACAAATTACCAATACTTTAACCGTTGGTGTGAATTAATGTCTGGGTTGACTAACATGTGAGGAATAAAGGAGACTATGATAAA
>XM_036971811.1
AACTAGGCTATTATGCCTTAGACGATTTACTTTCATTTTCATATTTACAACTACCTAAAAAATGACCGGACTACGAGAAAGggcaGAATTGTTTTTGCTGACTGAAGACAGTTTTAGGAGTAATGCCTACAATATCATCTGTGAAATGGACAAACTACAGGGACCTAAAGAATATGTGGATGAGGTATGCATGTACCCCTTTGAAGACAAAGATGCTCCACAGCATCTTCTTCTTAGGCTGGATTCATTCCCCCAAATACACCCCCGAGATGATCCTTGGTAACCATTTATCTACGATGATGAAGATATTCCCACAACCGTTTGAGAGTTACACAAGGAAACTACCAAAACGGACTCCGTTCTCCTGTGTGCTGGATATGGTGGTCTCCATGTTTGGACCAGACAATGAGTTGGAAATATGGCGGAAACTACGGGATATCGCCAATGTCATGTCAGGGAAACACCGGTTCACCTCCTCTACCATCTGCATCTCTGAAAGTGGAGGGAGGTACTATGGAGCGTCCATGTCCTGCACGGGGAAGAAAGAGGGACAGATTATGATcgctgtgtcctgtctgtgtacCTGGCACTACAGTGTATCCAATGCCGTGATGACATACAAGCCAGATAAGAACAAGAGAAAGAACTTTGATGGCACCATGAAACTACAAGAGTATGTAAAGTGCCAGGCTTCCAATGTGAAGAGTGGGGAGGAGATGCCTCCTTGCAGGTCCTGTGGTAATCTTTTTGGTCTGGAGAAACCAAGCAATCAGATGTGGCCCTATGGGAACTGCGCAGAGGCAGAGAGCTTGAGCAAACTGCTCTATGGAGAGGAAGAGATTGTTAAGAAAGTAGTACCATCAGTTGATTGCAAAATGCGAGAGCAAGTGGTGAAGGAGGGTAAAGGCTCACCTGGAAGAGAAGCTCCAAGAGTCAGAATTTCAATGGGATTCTTCCTATTACATTCCACAGTAGATTGTCAGAGAAACGCAtgtgcgcacacgcacacacacactaagtttACAGATATACAGATGCACATTCCTACTGTGACACACAGAtccaaaacatgaaacatataaTCATAGCTTGGTGCGGGGCTAGCAACATGTGATTTGTGGCTGACAGTTAGCATTgaaacattgccaaagcagtGAACCACTCTGTgcatgtagtatacagtataactGCTAGGCTATAGCTATCGGCTCTTATCAATGACATCTGTGAAGTAGATGGTTATTTTAGTGGGGGACTTTGAGAACTTACAGTCAACAAAATAAAAGTTAGATAGTCAGGCCCCCATTGATCTTGTTATAATGTTTTAGCATAAGAATACAGCTTTAGCCTTGTAAAATGCAGGTATTTGCAGGAAATGTGCTTAAAAACGACAAAAAATTGCTCTCAgttccatggcaaaatgtatagaatggcaggaaattagctttcaaATAAAATGTTCTCTACACCAACCCATATGGTGGGTTGTGACTCAAAAGTCACCTCCATTTGTGTTTCACAAAGCCAAAAAGTTTGGAAATCCCTGGTTGGAAACCTCGATGGAGATACTGTATTATTCATCATTTGTATGCTGTATTTAATTGAATACTCTAGACAAAGAATTTTACATTAAacgtgtatttttttaaattgattttaaACTTTACTTCTACTGTAAGCATTGATGCACATCTTACTCATCTGTAACAAATTACCAATACTTTAACCGTTGGTGTGAATTAATGTCTGGGTTGACTAACATGTGAGGAATAAAGGAGACTATGATAAA
>XM_036971810.1
TATTATGCCTTAGACGATTTACTTTCATTTTCATATTTACAACTACCTAAAAAATGACCGGACTACGAGAAAGggcaGAATTGTTTTTGCTGACTGAAGACAGTTTTAGGAGTAATGCCTACAATATCATCTGTGAAATGGACAAACTACAGGGACCTAAAGAATATGTGGATGAGATGCTCCACAGCATCTTCTTCTTAGGCTGGATTCATTCCCCCAAATACACCCCCGAGATGATCCTTGGTAACCATTTATCTACGATGATGAAGATATTCCCACAACCGTTTGAGAGTTACACAAGGAAACTACCAAAACGGACTCCGTTCTCCTGTGTGCTGGATATGGTGGTCTCCATGTTTGGACCAGACAATGAGTTGGAAATATGGCGGAAACTACGGGATATCGCCAATGTCATGTCAGGGAAACACCGGTTCACCTCCTCTACCATCTGCATCTCTGAAAGTGGAGGGAGGTACTATGGAGCGTCCATGTCCTGCACGGGGAAGAAAGAGGGACAGATTATGATcgctgtgtcctgtctgtgtacCTGGCACTACAGTGTATCCAATGCCGTGATGACATACAAGCCAGATAAGAACAAGAGAAAGAACTTTGATGGCACCATGAAACTACAAGAGTATGTAAAGTGCCAGGCTTCCAATGTGAAGAGTGGGGAGGAGATGCCTCCTTGCAGGTCCTGTGGTAATCTTTTTGGTCTGGAGAAACCAAGCAATCAGATGTGGCCCTATGGGAACTGCGCAGAGGCAGAGAGCTTGAGCAAACTGCTCTATGGAGAGGAAGAGATTGTTAAGAAAGTAGTACCATCAGTTGATTGCAAAATGCGAGAGCAAGTGGTGAAGGAGGGTAAAGGCTCACCTGGAAGAGAAGCTCCAAGAGTCAGAATTTCAATGGGATTCTTCCTATTACATTCCACAGTAGATTGTCAGAGAAACGCAtgtgcgcacacgcacacacacactaagtttACAGATATACAGATGCACATTCCTACTGTGACACACAGAtccaaaacatgaaacatataaTCATAGCTTGGTGCGGGGCTAGCAACATGTGATTTGTGGCTGACAGTTAGCATTgaaacattgccaaagcagtGAACCACTCTGTgcatgtagtatacagtataactGCTAGGCTATAGCTATCGGCTCTTATCAATGACATCTGTGAAGTAGATGGTTATTTTAGTGGGGGACTTTGAGAACTTACAGTCAACAAAATAAAAGTTAGATAGTCAGGCCCCCATTGATCTTGTTATAATGTTTTAGCATAAGAATACAGCTTTAGCCTTGTAAAATGCAGGTATTTGCAGGAAATGTGCTTAAAAACGACAAAAAATTGCTCTCAgttccatggcaaaatgtatagaatggcaggaaattagctttcaaATAAAATGTTCTCTACACCAACCCATATGGTGGGTTGTGACTCAAAAGTCACCTCCATTTGTGTTTCACAAAGCCAAAAAGTTTGGAAATCCCTGGTTGGAAACCTCGATGGAGATACTGTATTATTCATCATTTGTATGCTGTATTTAATTGAATACTCTAGACAAAGAATTTTACATTAAacgtgtatttttttaaattgattttaaACTTTACTTCTACTGTAAGCATTGATGCACATCTTACTCATCTGTAACAAATTACCAATACTTTAACCGTTGGTGTGAATTAATGTCTGGGTTGACTAACATGTGAGGAATAAAGGAGACTATGATAAA

Function

NR:

description
uncharacterized protein LOC110488102 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971812.1 False 1794 mRNA 0.42 5 22214554 22222102
XM_021560120.2 False 1764 mRNA 0.41 5 22214902 22222102
XM_021560121.2 False 1792 mRNA 0.41 5 22214902 22222102
XM_036971811.1 False 1789 mRNA 0.41 5 22214902 22222102
XM_036971810.1 True 1753 mRNA 0.41 5 22214910 22222102

Neighbor

gene id symbol gene type direction distance location
LOC110488103 LOC106570351 coding upstream 4085 22206924 ~ 22210469 (+)
LOC110488098 LOC106570353 coding upstream 52863 22133277 ~ 22161691 (+)
LOC110488097 LOC106570356 coding upstream 84513 22112030 ~ 22130041 (+)
LOC118946490 NA coding upstream 164193 22049096 ~ 22050469 (+)
LOC110488094 LOC106570360 coding upstream 263565 21948384 ~ 21950989 (+)
c32h5orf49 cssa14h5orf49 coding downstream 183869 22405971 ~ 22416346 (+)
LOC118936411 NA coding downstream 330384 22552486 ~ 22565890 (+)
LOC118946522 NA coding downstream 344599 22566701 ~ 22572442 (+)
LOC110488106 NA coding downstream 351147 22573249 ~ 22579988 (+)
LOC110488108 LOC106588698 coding downstream 408080 22630182 ~ 22646620 (+)
G2307767 NA non-coding upstream 39148 22174993 ~ 22175406 (+)
G2306912 NA non-coding upstream 512402 21701705 ~ 21702152 (+)
G2306892 NA non-coding upstream 539273 21674986 ~ 21675281 (+)
G2306890 NA non-coding upstream 543165 21671151 ~ 21671389 (+)
G2307792 NA non-coding downstream 4184 22226286 ~ 22230151 (+)
G2307779 LOC106570344 non-coding downstream 35034 22257136 ~ 22259964 (+)
G2307812 LOC106570344 non-coding downstream 48012 22270114 ~ 22272124 (+)
G2307829 NA non-coding downstream 66869 22288971 ~ 22296379 (+)
G2307876 NA non-coding downstream 147077 22369179 ~ 22428002 (+)
G2306825 NA other upstream 627120 21587088 ~ 21587434 (+)
G2306688 NA other upstream 890658 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 902676 21307432 ~ 21311878 (+)
G2306173 LOC106570399 other upstream 1400256 20813189 ~ 20814298 (+)
G2305956 NA other upstream 1660870 20553333 ~ 20553684 (+)
G2308224 NA other downstream 382218 22604320 ~ 22604721 (+)
LOC110488133 NA other downstream 1757248 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 1929585 24151527 ~ 24157473 (+)
G2311528 NA other downstream 3513092 25735194 ~ 25736847 (+)

Expression


Co-expression Network