c32h5orf49 (cssa14h5orf49)


Basic Information

Item Value
gene id c32h5orf49
gene name cssa14h5orf49
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 22405971 ~ 22416346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560125.2
TGTGTGTTCCTAGTGCGCAGTAGCACTGGATTAGTATCTTAGCAACCATAGACGCCACTGGTAGCTATTTTTTGTTTACCAAACTAAACTAGAAAGTtcgttattattttttacatagaTAGCTAGCTATAGGATGGATGTGTTACTTGAATCGAAAACAAAACCAGTTTCGACTATATCTGTGTATAGTTACATTCCACCAAGACGAACTGAACCAAAAGAGAGAACCTATTACAACAGTGACTCCAAGGCACGGGAGGTATCCTTATACGACTGCATATACCGGCGGGCGGAGGGCTATGACAGCAAACTACACCGCGACGATAGAGAGCACTCCAACAGCAGGGGACTAGACTTGTACTCAGagGAGTCTTCCAGACCTGCACCAGTCCTGTCCTCATCAGAGTATGGAAGACGCCTGCCTCCTGTCCTCTACAAACCTGGCAGGCAGTTTGCCCGCATCTCTCACATCCACACCGAGTTCTTCAGGAAAAACGGGATCACACGCAATTTTGAGGAGGGATACGGATCAGTGGTTCCTGTGTGAGGAAGTCCGTATTCCCAACACCAGAGATAGAGTGGGtgcagtgagggagggagagtgatggTTTTATCAATGTGAATATGTATGGGCACAACAACACACCCAACTGATACAGTCAGTGTAGCAAAGATATTTAAAGATATAGATCATTATAGAAATAGAGATATATTTAAAGAGAGATTATATATTTTAAGatagataaaataaaaaagttttaaaaagtaattatatatatat
>TU2639980
CATAGACGCCACTGGTAGCTATTTTTTGTTTACCAAACTAAACTAGAAAGTtcgttattattttttacatagaTAGCTAGCTATAGGATGGATGTGTTACTTGAATCGAAAACAAAACCAGTTTCGACTATATCTGTGTATAGTTACATTCCACCAAGACGAACTGAACCAAAAGAGAGAACCTATTACAACAGTGACTCCAAGGAGTCTTCCAGACCTGCACCAGTCCTGTCCTCATCAGAGTATGGAAGACGCCTGCCTCCTGTCCTCTACAAACCTGGCAGGCAGTTTGCCCGCATCTCTCACATCCACACCGAGTTCTTCAGGAAAAACGGGATCACACGCAATTTTGAGGAGGGATACGGATCAGTGGTTCCTGTGTGAGGAAGTCCGTATTCCCAACACCAGAGATAGAGTGGGtgcagtgagggagggagagtgatggTTTTATCAATGTGAATATGTATGGGCACAACAACACACCCAACTGATACAGTCAGTGTAGCAAAGATATTTAAAGATATAGATCATTATAGAAATAGAGATATATTTAAAGAGAGATTA

Function

NR:

description
uncharacterized protein C5orf49 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560125.2 False 781 mRNA 0.42 3 22405971 22416346
TU2639980 True 564 TUCP 0.42 2 22406017 22416292

Neighbor

gene id symbol gene type direction distance location
LOC110488101 NA coding upstream 183869 22191696 ~ 22222102 (+)
LOC110488102 LOC106570350 coding upstream 183869 22214554 ~ 22222102 (+)
LOC110488103 LOC106570351 coding upstream 195502 22206924 ~ 22210469 (+)
LOC110488098 LOC106570353 coding upstream 244280 22133277 ~ 22161691 (+)
LOC110488097 LOC106570356 coding upstream 275930 22112030 ~ 22130041 (+)
LOC118936411 NA coding downstream 136140 22552486 ~ 22565890 (+)
LOC118946522 NA coding downstream 150355 22566701 ~ 22572442 (+)
LOC110488106 NA coding downstream 156903 22573249 ~ 22579988 (+)
LOC110488108 LOC106588698 coding downstream 213836 22630182 ~ 22646620 (+)
LOC110488110 LOC106570331 coding downstream 449442 22865788 ~ 22871890 (+)
G2307880 NA non-coding upstream 29424 22375696 ~ 22376547 (+)
G2307829 NA non-coding upstream 109592 22288971 ~ 22296379 (+)
G2307812 LOC106570344 non-coding upstream 133847 22270114 ~ 22272124 (+)
G2307779 LOC106570344 non-coding upstream 146007 22257136 ~ 22259964 (+)
G2307792 NA non-coding upstream 175820 22226286 ~ 22230151 (+)
G2308165 NA non-coding downstream 112246 22528592 ~ 22528802 (+)
G2308170 NA non-coding downstream 115787 22532133 ~ 22532363 (+)
G2308171 NA non-coding downstream 116040 22532386 ~ 22532622 (+)
G2308203 NA non-coding downstream 140345 22556691 ~ 22558285 (+)
G2306825 NA other upstream 818537 21587088 ~ 21587434 (+)
G2306688 NA other upstream 1082075 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 1094093 21307432 ~ 21311878 (+)
G2306173 LOC106570399 other upstream 1591673 20813189 ~ 20814298 (+)
G2305956 NA other upstream 1852287 20553333 ~ 20553684 (+)
G2308224 NA other downstream 187974 22604320 ~ 22604721 (+)
LOC110488133 NA other downstream 1563004 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 1735341 24151527 ~ 24157473 (+)
G2311528 NA other downstream 3318848 25735194 ~ 25736847 (+)
G2311978 NA other downstream 3502806 25919152 ~ 25919800 (+)

Expression


Co-expression Network