XLOC_004167


Basic Information

Item Value
gene id XLOC_004167
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27502205 ~ 27507973 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007965
CCTTCAGCTTCCATTGAGGACACAGTGAAGAATGATGCCAAGGACTAAATCCTAACATGGCGGGCAACAAGGACTTCAGAAAACATCGAGTTGGTTACTTCTGTCACGATCTGGCTGCAACACTTCATTTGCGGGTGGACTGGAGGTTACATGTTGACGGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACACTGGGAGATAACTATACAACCTACTGTCTTTCTCAAAGTCCAAATCAAGCTACAGAGTTTCATCCTGTACATCTCttggtttttattgtttttgaataTCGATTAACACTATTGTTTGTATGTTAGTAGCTTATTTACATGGTAATGCTTGTGCAGTGTGAGGTAGTAGATTGTATAGTTGTAGGGTAGTGATTTTATCCTGTGTAGAAGATAACTATACAATCTATTGCCTTCCCTGAGGGGCAGAAATACACAGAAAAGGAATATGCAAGTTTGCTGGATAATATGAAGCGCTCATGTTTTCTTTAACACAATcactattatgattaaaactCTTATGAATTGCTTCTTAATAGCTACTAAAATAAGCTTGTTATAGTGAGTGTGTTTATGTATTAGAGGGGTTTAATGGATGCAGAATATAATATGTCATTTATAAGTAGTATTAAACTGCCAATATGCCAGCTGCTCAAGTGGAAAGTGGTCCCTTTACTAAAATGTCacctgttttctgtattttaatgtaaCTTAATATGCATGTGTCTGaagttcatgtttttatttcacatatataaGTCAGTGACTATTTGAATCTATTTATAACAAAGCCATACAAATATGTTGCATAATGTTTTCTTTAGTGCATCGATTTAGATTTTTTCAGGGGCTTATTTAATGTAAATTGAAATGTTTTTGGTCAGTGGTGCTGATGAAAATTATAATGACTGAAgttataatgaaaaaataaaacctcaatctttataattttattagtactttattcattaatattttgttttatttcattagtaATTTTTCACTTTTAACTTCATcacttttaaaacaaaactattttgccAATAATTATTATAACACATTATCACCATCAATCTTTGTCAATGATTAGTGTTTGCCAATGTTGAAAACCTGttgtaatgcacattttaaaaaggttttcttGATAAATGAATAGCATAATGGGATATTCTTGTGGCCTCCATCCTAAATTTAACCTGTAGAGGGCGCTATTGTATTGTCTATATTGAACACATGGCTAAATTAAACGA
>TCONS_00007962
TGGTAATGCTTGTGCAGTGTGAGGTAGTAGATTGTATAGTTGTAGGGTAGTGATTTTATCCTGTGTAGAAGATAACTATACAATCTATTGCCTTCCCTGAGGGGCAGAAATACACAGAAAAGGAATATGCAAGTTTGCTGGATAATATGAAGCGCTCATGTTTTCTTTAACACAATcactattatgattaaaactCTTATGAATTGCTTCTTAATAGCTACTAAAATAAGCTTGTTATAGTGAGTGTGTTTATGTATTAGAGGGGTTTAATGGATGCAGAATATAATATGTCATTTATAAGTAGTATTAAACTGCCAATATGCCAGCTGCTCAAGTGGAAAGTGGTCCCTTTACTAAAATGTCacctgttttctgtattttaatgtaaCTTAATATGCATGTGTCTGaagttcatgtttttatttcacatatataaGTCAGTGACTATTTGAATCTATTTATAACAAAGCCATACAAATATGTTGCATAATGTTTTCTTTAGTGCATCGATTTAGATTTTTTCAGGGGCTTATTTAATGTAAATTGAAATGTTTTTGGTCAGTGGTGCTGATGAAAATTATAATGACTGAAgttataatgaaaaaataaaacctcaatctttat
>TCONS_00007963
TGGTAATGCTTGTGCAGTGTGAGGTAGTAGATTGTATAGTTGTAGGGTAGTGATTTTATCCTGTGTAGAAGATAACTATACAATCTATTGCCTTCCCTGAGGGGCAGAAATACACA
>TCONS_00007964
GACGGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACACTGGGAGATAACTATACAACCTACTGTCTTTCTCAAAGTC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0006457 protein folding biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000082942 ENSDARG00000105448 ENSDARG00000105504

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007965 False 1271 lncRNA 0.33 2 27502205 27507973
TCONS_00007962 False 624 lncRNA 0.31 1 27502509 27503132
TCONS_00007963 False 116 miRNA 0.40 1 27503017 27503132
TCONS_00007964 True 89 miRNA 0.45 1 27503232 27503320

Neighbor

gene id symbol gene type direction distance location
XLOC_004166 wnt7aa coding downstream 1178 27486584 ~ 27501027 (-)
XLOC_004164 iqsec1b coding downstream 444633 26704181 ~ 27057572 (-)
XLOC_004165 CR847934.1 coding downstream 753776 26748292 ~ 26748429 (-)
XLOC_004163 acad9 coding downstream 800594 26685982 ~ 26701611 (-)
XLOC_004162 efcc1 coding downstream 835578 26619133 ~ 26666627 (-)
XLOC_004168 ptpdc1a coding upstream 3304 27511277 ~ 27537661 (-)
XLOC_004169 NA coding upstream 35605 27543578 ~ 27625465 (-)
XLOC_004170 phf2 coding upstream 136551 27644524 ~ 27702835 (-)
XLOC_004171 fam120a coding upstream 197057 27705030 ~ 27739049 (-)
XLOC_004172 cass4 coding upstream 237645 27745618 ~ 27778831 (-)
XLOC_004063 CR854846.1 misc downstream 11374527 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 14810514 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 14880438 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 14910909 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 14988943 12512966 ~ 12513262 (-)
XLOC_004152 CR933820.1 non-coding downstream 1832250 25669839 ~ 25669955 (-)
XLOC_004150 NA non-coding downstream 2025225 25475305 ~ 25476980 (-)
XLOC_004147 NA non-coding downstream 2093309 25368112 ~ 25408896 (-)
XLOC_004144 dre-mir-499 non-coding downstream 2296962 25205153 ~ 25205243 (-)
XLOC_004173 BX601648.1 non-coding upstream 275785 27783758 ~ 27806767 (-)
XLOC_004174 NA non-coding upstream 292886 27800859 ~ 27809715 (-)
XLOC_004180 NA non-coding upstream 688984 28196957 ~ 28200504 (-)
XLOC_004181 NA non-coding upstream 910903 28418876 ~ 28424141 (-)

Expression


Co-expression Network