LOC118946453


Basic Information

Item Value
gene id LOC118946453
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 22979779 ~ 22984566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041282.1
GGCAAAATGGCAGCGTCCATACCAGGCATTTGAAAGATTTTATGCCGTGTCTATCCTTTACTTTTAGGCAGAATAAGTTTCCAAAGAGGTTACCTGTCAGGCGTTGGACCCAGGCTGTTTCCATGTGTgaagtccagcctctctctgtgcACTGCAGCCTAACCTGAAATCTCCAGTGATGCTGCTGTGGCAGTGGAGACTAACTGTTACAAGGACAGACCATGGGGCAACCTGGAGAGCGAAGAGTACATAGAGCACTAACTACAGGAGGAACCAGAAAGGAGGGATTCCCCCTCAGAAGACACGCAATACCTGCATTGTAGGTGTAACAGCAGTGGTTctgtaaccttgcctgagacctggaGACTTGTGGCAGCTCTCCAAGCTATTGTCTAGGCTTTTTTGGAGAGTGCACAGATATTCAGAGGATGTCTACCATGATGCTGTCTGCTCTGTGTTAGGCTATGTAActccatattattattattatattctcCACCAGACAGTCACacgagttcgtactgttaggtgacctaaactgggatatgcttaacactccggccgtcctacaatctaagcttgatgccctcaatc
>TU2640931
CCATGTGTgaagtccagcctctctctgtgcACTGCAGCCTAACCTGAAATCTCCAGTGATGCTGCTGTGGCAGTGGAGACTAACTGTTACAAGGACAGACCATGGGGCAACCTGGAGAGCGAAGAGTACATAGAGCACTAACTACAGGAGGAACCAGAAAGGAGGGATTCCCCCTCAGAAGACACGCAATACCTGCATTGTAGGTGTAACAGCAGTGGTTctgtaaccttgcctgagacctggaGACTTGTGGCAGCTCTCCAAGCTATTGTCTAGGCTTTTTTGGAGAGTGCACAGATATTCAGAGGATGTCTACCATGATGCTGTCTGCTCTGTGTTAGGCTATGTAActccatattattattattatattctcCACCAGACAGTCACacgagttcgtactgttaggtgacctaaactgggatatgcttaacactccggccgtcctacaatctaagcttgatgccctcaatctcacacaaatgatcaaggaacctatcaggtacaaccccaaatctgtaaacatgggcaccctcatagatatcatcctgaccaacctgccctctaaatacacctctgctgtcttcaaccaggatctcagcgatcactgcctcattgcctgcgtccgtaatgggtccttggtcaaatgaccacccctcttcactgtcaaacgctccgtaaaacacttcagcgagcaggcctttctaatcgacctggcctgggtatcctggaaggacattgacctcatcccgtcagtagaggatgactggttattctttaaaagtgcttccctcaccatcttaaataatcatgccccgttcaaaaaatgtagaactaagaacaggtattgcccttggttcactccagacctgactgccttcaaccagcataaaaacatcctgtggcgtactgcattagcatcgaatagcccccgcgatatgcaactttttagggaagttaagaaccaatatacacagtcagttaggaaagcaaaggctagctttttcaaacagaaatttgcatcctgtagcacaaaatctaaaacattttgggacactgtaaacctcctcccagctgcccactgcactgaggctaggaaagaCTGTCACctccgataaatccacgataatcaagaatttcaataagcatttttctacggctggccatgctttccacctggctgcccccccgcttctccttcacccaaaatccagatgttctgaaagaactgcaaaatctggaccccaacAAATCAGCTCAGCTAGACAATCTTGACCCTCTCTtcctcaaggtcctaaacgatatcataaccaccatcaataaaagacagtactgtgcagccgtcttcatcgacctggccaaggctttcgactctgtcaatcaccacagccttggtttctctaatgactgcctcgcctggttcaccaactacttgatagagttcagtgtgtcaaatcggagggcctgttgtctgaacctctggcagtctctatggggtgccacagggttcaattctcgggccaactcttttctctgtatatatcaatgatgttgctcttgcttctggggattctctgatccacctctacgcgaCGACGCCATtcggtatacttctggcccttctttggacactgtgttaacaaacctccagacgagcttcaatgccatacaacactccttccgtggtctccaactgctcttaaatgctagtaaaactaaatgcatgcttttcaaccgatcgctgcccacaccctcccgcccgactagcatcactactctggatggttctgacttagatatgtggacaactacaaatacctaggtgtctggttagacggtaaactctccttccagacattaagcatctccaatccaaaatgaaatcttgaatcggcttcctatttcgcaaacaaagcctccttcactcatgctgctaaacataccctcgtaaaattgactatcctacctagaggtagaccgattatgattttaacgccgatacagattattggaggaccaaaaaaagcagatactgaataatcattttttttttttttttgtaatagtgacaattacaacaatactgaatgaacacttattttaacttaatataatacatcaataaaaatcaatttagcctcaaataaataatgaaacatgttcaatttggtttaaataatgcaaaaacaaagtgttggagatgtaaaagtgcaatatgtgcaatgtaaaaaaagctaacgtttgagttcctagctcagaacatatgaaagttggtggttccttttaacatgagacttcaatattccaaggtaagaggttttaggttgtagtatttatagtagtaatagtatttataggactatttctctctataccatttgtatttcatatacctttgactattggatgttcttataggcactataatattgccagtgtaacagtatagcttccgtccctctcctcgcccctacttgggctcgaaccaggaacacatcgacaacagccacactcgaagcagcgttaccgatcgctccacaaaagccgctgcccttgcagggcaaggggaataactactccaagtctcagagcgagtgatgtttgaaacgctattagcgcacacccagctaactaggtagccatttcacatcagttacaccagccattaggctgattggcttgaagtcataaacagcgctgtgcttgcgaagagctgctggcaaaacgcacgaaagtgctgtttgaatgaatgcttacgagcctgctgctgcctaccatcgctcaggcAGACTGcgctatcaaatcatagacttaattataacataacacacagaaatacgagcctttggtcattaatatggtcgaatccagaaactatcatttcgaaaacaaaacgtttattattttagggaaatacggaaccgttcggtattttatctaacgggtggcatccctaagtctaaatattcttgttacattgcacaaccttcaatgttatgtcatcatTACgtcaaattctggcaaattagttcacaatgagccaggctgcccaaactgttgcatataccctgactgcgtgcaatgaacacaagagaaattacacatttcacctggttaatattgcctgctaacctggatttcttgcaggtttaaaaatatatacttctgtgtattgattttaagaaaggcattggtgtttatggttaggtacagtcgtccaacgattgtgatttttttcgcaaatgcgcttttgttaaatcatcccccagcgttgcatcgattatatgcaacacaggacacgctagataaacaagtaatatcatcaaccatgtgtagttataactagtgattatgattgatttttacaagataagtttaatgctagctagcaacttaccttggcttctactgcattcgcgtaacaggcagtctcctcgtggagtgcaatgaggcaggtggttatagcgttggactagttaattgaaaggttgcaagattggatctcccgagctgacaatgtgaaaatctgtcgttctgcccctgaacaaggcaacaATCTAATTTGctctcacagtgccatctgttttgcccccaaagccccatatactacccaccactgtgacctgtatgctctcgttggctggccctagcTTCATattcaccaaacccactggctccaggtcatctatagtctttgctaggtaaagccctgccttatctcagctcactggtcaccatagcaacacccacacgccctccagcaggtatatttcactggtcacccccaaagccatctcctcctttggccgccagcagttctctgctgccaatgactggaacgaattgcaaaaatcactgaagctggagtcttatatctctctcactaactttaagcatcagctgtcagagcagcttaccgatcactgcacctgtacacagcccatctgtaaatagcccacccaactaccgcatccccatattatttatttttgctcttttgcaccccagtatctctacttgcacatcacctgtacttctatcactccagtgttaatgctaaattgtaattatttctccactatagcctatttattgccctacctccttaatcttac
>TU2640932
CCATGTGTgaagtccagcctctctctgtgcACTGCAGCCTAACCTGAAATCTCCAGTGATGCTGCTGTGGCAGTGGAGACTAACTGTTACAAGGACAGACCATGGGGCAACCTGGAGAGCGAAGGTATGGAGATTAGAGATTAGTACATAGAGCACTAACTACAGGAGGAACCAGAAAGGAGGGATTCCCCCTCAGAAGACACGCAATACCTGCATTGTAGGTGTAACAGCAGTGGTTctgtaaccttgcctgagacctggaGACTTGTGGCAGCTCTCCAAGCTATTGTCTAGGCTTTTTTGGAGAGTGCACAGATATTCAGAGGATGTCTACCATGATGCTGTCTGCTCTGTGTTAGGCTATGTAActccatattattattattatattctcCACCAGACAGTCACacgagttcgtactgttaggtgacctaaactgggatatgcttaacactccggccgtcctacaatctaagcttgatgccctcaatctcacacaaatgatcaaggaacctatcaggtacaaccccaaatctgtaaacatgggcaccctcatagatatcatcctgaccaacctgccctctaaatacacctctgctgtcttcaaccaggatctcagcgatcactgcctcattgcctgcgtccgtaatgggtccttggtcaaatgaccacccctcttcactgtcaaacgctccgtaaaacacttcagcgagcaggcctttctaatcgacctggcctgggtatcctggaaggacattgacctcatcccgtcagtagaggatgactggttattctttaaaagtgcttccctcaccatcttaaataatcatgccccgttcaaaaaatgtagaactaagaacaggtattgcccttggttcactccagacctgactgccttcaaccagcataaaaacatcctgtggcgtactgcattagcatcgaatagcccccgcgatatgcaactttttagggaagttaagaaccaatatacacagtcagttaggaaagcaaaggctagctttttcaaacagaaatttgcatcctgtagcacaaaatctaaaacattttgggacactgtaaacctcctcccagctgcccactgcactgaggctaggaaagaCTGTCACctccgataaatccacgataatcaagaatttcaataagcatttttctacggctggccatgctttccacctggctgcccccccgcttctccttcacccaaaatccagatgttctgaaagaactgcaaaatctggaccccaacAAATCAGCTCAGCTAGACAATCTTGACCCTCTCTtcctcaaggtcctaaacgatatcataaccaccatcaataaaagacagtactgtgcagccgtcttcatcgacctggccaaggctttcgactctgtcaatcaccacagccttggtttctctaatgactgcctcgcctggttcaccaactacttgatagagttcagtgtgtcaaatcggagggcctgttgtctgaacctctggcagtctctatggggtgccacagggttcaattctcgggccaactcttttctctgtatatatcaatgatgttgctcttgcttctggggattctctgatccacctctacgcgaCGACGCCATtcggtatacttctggcccttctttggacactgtgttaacaaacctccagacgagcttcaatgccatacaacactccttccgtggtctccaactgctcttaaatgctagtaaaactaaatgcatgcttttcaaccgatcgctgcccacaccctcccgcccgactagcatcactactctggatggttctgacttagatatgtggacaactacaaatacctaggtgtctggttagacggtaaactctccttccagacattaagcatctccaatccaaaatgaaatcttgaatcggcttcctatttcgcaaacaaagcctccttcactcatgctgctaaacataccctcgtaaaattgactatcctacctagaggtagaccgattatgattttaacgccgatacagattattggaggaccaaaaaaagcagatactgaataatcattttttttttttttttgtaatagtgacaattacaacaatactgaatgaacacttattttaacttaatataatacatcaataaaaatcaatttagcctcaaataaataatgaaacatgttcaatttggtttaaataatgcaaaaacaaagtgttggagatgtaaaagtgcaatatgtgcaatgtaaaaaaagctaacgtttgagttcctagctcagaacatatgaaagttggtggttccttttaacatgagacttcaatattccaaggtaagaggttttaggttgtagtatttatagtagtaatagtatttataggactatttctctctataccatttgtatttcatatacctttgactattggatgttcttataggcactataatattgccagtgtaacagtatagcttccgtccctctcctcgcccctacttgggctcgaaccaggaacacatcgacaacagccacactcgaagcagcgttaccgatcgctccacaaaagccgctgcccttgcagggcaaggggaataactactccaagtctcagagcgagtgatgtttgaaacgctattagcgcacacccagctaactaggtagccatttcacatcagttacaccagccattaggctgattggcttgaagtcataaacagcgctgtgcttgcgaagagctgctggcaaaacgcacgaaagtgctgtttgaatgaatgcttacgagcctgctgctgcctaccatcgctcaggcAGACTGcgctatcaaatcatagacttaattataacataacacacagaaatacgagcctttggtcattaatatggtcgaatccagaaactatcatttcgaaaacaaaacgtttattattttagggaaatacggaaccgttcggtattttatctaacgggtggcatccctaagtctaaatattcttgttacattgcacaaccttcaatgttatgtcatcatTACgtcaaattctggcaaattagttcacaatgagccaggctgcccaaactgttgcatataccctgactgcgtgcaatgaacacaagagaaattacacatttcacctggttaatattgcctgctaacctggatttcttgcaggtttaaaaatatatacttctgtgtattgattttaagaaaggcattggtgtttatggttaggtacagtcgtccaacgattgtgatttttttcgcaaatgcgcttttgttaaatcatcccccagcgttgcatcgattatatgcaacacaggacacgctagataaacaagtaatatcatcaaccatgtgtagttataactagtgattatgattgatttttacaagataagtttaatgctagctagcaacttaccttggcttctactgcattcgcgtaacaggcagtctcctcgtggagtgcaatgaggcaggtggttatagcgttggactagttaattgaaaggttgcaagattggatctcccgagctgacaatgtgaaaatctgtcgttctgcccctgaacaaggcaacaATCTAATTTGctctcacagtgccatctgttttgcccccaaagccccatatactacccaccactgtgacctgtatgctctcgttggctggccctagcTTCATattcaccaaacccactggctccaggtcatctatagtctttgctaggtaaagccctgccttatctcagctcactggtcaccatagcaacacccacacgccctccagcaggtatatttcactggtcacccccaaagccatctcctcctttggccgccagcagttctctgctgccaatgactggaacgaattgcaaaaatcactgaagctggagtcttatatctctctcactaactttaagcatcagctgtcagagcagcttaccgatcactgcacctgtacacagcccatctgtaaatagcccacccaactaccgcatccccatattatttatttttgctcttttgcaccccagtatctctacttgcacatcacctgtacttctatcactccagtgttaatgctaaattgtaattatttctccactatagcctatttattgccctacctccttaatcttac
>TU2640936
ACTATTTGTTTGGTTTCTAGTTTCCAAAGAGGTTACCTGTCAGGCGTTGGACCCAGGCTGTTTCCATGTGTgaagtccagcctctctctgtgcACTGCAGCCTAACCTGAAATCTCCAGTGATGCTGCTGTGGCAGTGGAGACTAACTGTTACAAGGACAGACCATGGGGCAACCTGGAGAGCGAAGAGTACATAGAGCACTAACTACAGGAGGAACCAGAAAGGAGGGATTCCCCCTCAGAAGACACGCAATACCTGCATTGTAGGTGTAACAGCAGTGGTTctgtaaccttgcctgagacctggaGACTTGTGGCAGCTCTCCAAGCTATTGTCTAGGCTTTTTTGGAGAGTGCACAGATATTCAGAGGATGTCTACCATGATGCTGTCTGCTCTGTGTTAGGCTATGTAActccatattattattattatattctcCACCAGACAGTCACacgagttcgtactgttaggtgacctaaactgggatatgcttaacactccggccgtcctacaatctaagcttgatgccctcaatctcacacaaatgatcaaggaacctatcaggtacaaccccaaatctgtaaacatgggcaccctcatagatatcatcctgaccaacctgccctctaaatacacctctgctgtcttcaaccaggatctcagacattgacctcatcccgtcagtagaggatgactggttattctttaaaagtgcttccctcaccatcttaaataatcatgccccgttcaaaaaatgtagaactaagaacaggtattgcccttggttcactccagacctgactgccttcaaccagcataaaaacatcctgtggcgtactgcattagcatcgaatagcccccgcgatatgcaactttttagggaagttaagaaccaatatacacagtcagttaggaaagcaaaggctagctttttcaaacagaaatttgcatcctgtagcacaaaatctaaaacattttgggacactgtaaacctcctcccagctgcccactgcactgaggctaggaaagaCTGTCACctccgataaatccacgataatcaagaatttcaataagcatttttctacggctggccatgctttccacctggctgcccccccgcttctccttcacccaaaatccagatgttctgaaagaactgcaaaatctggaccccaacAAATCAGCTCAGCTAGACAATCTTGACCCTCTCTtcctcaaggtcctaaacgatatcataaccaccatcaataaaagacagtactgtgcagccgtcttcatcgacctggccaaggctttcgactctgtcaatcaccacagccttggtttctctaatgactgcctcgcctggttcaccaactacttgatagagttcagtgtgtcaaatcggagggcctgttgtctgaacctctggcagtctctatggggtgccacagggttcaattctcgggccaactcttttctctgtatatatcaatgatgttgctcttgcttctggggattctctgatccacctctacgcgaCGACGCCATtcggtatacttctggcccttctttggacactgtgttaacaaacctccagacgagcttcaatgccatacaacactccttccgtggtctccaactgctcttaaatgctagtaaaactaaatgcatgcttttcaaccgatcgctgcccacaccctcccgcccgactagcatcactactctggatggttctgacttagatatgtggacaactacaaatacctaggtgtctggttagacggtaaactctccttccagacattaagcatctccaatccaaaatgaaatcttgaatcggcttcctatttcgcaaacaaagcctccttcactcatgctgctaaacataccctcgtaaaattgactatcctacctagaggtagaccgattatgattttaacgccgatacagattattggaggaccaaaaaaagcagatactgaataatcattttttttttttttttgtaatagtgacaattacaacaatactgaatgaacacttattttaacttaatataatacatcaataaaaatcaatttagcctcaaataaataatgaaacatgttcaatttggtttaaataatgcaaaaacaaagtgttggagatgtaaaagtgcaatatgtgcaatgtaaaaaaagctaacgtttgagttcctagctcagaacatatgaaagttggtggttccttttaacatgagacttcaatattccaaggtaagaggttttaggttgtagtatttatagtagtaatagtatttataggactatttctctctataccatttgtatttcatatacctttgactattggatgttcttataggcactataatattgccagtgtaacagtatagcttccgtccctctcctcgcccctacttgggctcgaaccaggaacacatcgacaacagccacactcgaagcagcgttaccgatcgctccacaaaagccgctgcccttgcagggcaaggggaataactactccaagtctcagagcgagtgatgtttgaaacgctattagcgcacacccagctaactaggtagccatttcacatcagttacaccagccattaggctgattggcttgaagtcataaacagcgctgtgcttgcgaagagctgctggcaaaacgcacgaaagtgctgtttgaatgaatgcttacgagcctgctgctgcctaccatcgctcaggcAGACTGcgctatcaaatcatagacttaattataacataacacacagaaatacgagcctttggtcattaatatggtcgaatccagaaactatcatttcgaaaacaaaacgtttattattttagggaaatacggaaccgttcggtattttatctaacgggtggcatccctaagtctaaatattcttgttacattgcacaaccttcaatgttatgtcatcatTACgtcaaattctggcaaattagttcacaatgagccaggctgcccaaactgttgcatataccctgactgcgtgcaatgaacacaagagaaattacacatttcacctggttaatattgcctgctaacctggatttcttgcaggtttaaaaatatatacttctgtgtattgattttaagaaaggcattggtgtttatggttaggtacagtcgtccaacgattgtgatttttttcgcaaatgcgcttttgttaaatcatcccccagcgttgcatcgattatatgcaacacaggacacgctagataaacaagtaatatcatcaaccatgtgtagttataactagtgattatgattgatttttacaagataagtttaatgctagctagcaacttaccttggcttctactgcattcgcgtaacaggcagtctcctcgtggagtgcaatgaggcaggtggttatagcgttggactagttaattgaaaggttgcaagattggatctcccgagctgacaatgtgaaaatctgtcgttctgcccctgaacaaggcaacaATCTAATTTGctctcacagtgccatctgttttgcccccaaagccccatatactacccaccactgtgacctgtatgctctcgttggctggccctagcTTCATattcaccaaacccactggctccaggtcatctatagtctttgctaggtaaagccctgccttatctcagctcactggtcaccatagcaacacccacacgccctccagcaggtatatttcactggtcacccccaaagccatctcctcctttggccgccagcagttctctgctgccaatgactggaacgaattgcaaaaatcactgaagctggagtcttatatctctctcactaactttaagcatcagctgtcagagcagcttaccgatcactgcacctgtacacagcccatctgtaaatagcccacccaactaccgcatccccatattatttatttttgctcttttgcaccccagtatctctacttgcacatcacctgtacttctatcactccagtgttaatgctaaattgtaattatttctccactatagcctatttattgccctacctccttaatcttac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041282.1 False 594 mRNA 0.47 3 22983420 22984566
TU2640931 False 4115 TUCP 0.44 2 22979779 22984071
TU2640932 False 4133 TUCP 0.44 2 22979779 22984071
TU2640936 True 4044 TUCP 0.43 3 22979779 22984134

Neighbor

gene id symbol gene type direction distance location
LOC110488116 LOC106570325 coding downstream 28472 22950344 ~ 22954948 (-)
ndufs6 LOC106570329 coding downstream 97250 22883692 ~ 22886170 (-)
LOC110488109 irx1 coding downstream 193062 22786417 ~ 22790358 (-)
LOC110488107 ube2ql1 coding downstream 357285 22611255 ~ 22626135 (-)
LOC118946514 NA coding downstream 447258 22533216 ~ 22536162 (-)
LOC110488119 NA coding upstream 5027 22989593 ~ 22991094 (-)
LOC110488121 LOC106570321 coding upstream 33063 23017629 ~ 23029581 (-)
LOC110488123 LOC106570320 coding upstream 60054 23044620 ~ 23061428 (-)
LOC110488126 arl4a coding upstream 237948 23222514 ~ 23225801 (-)
LOC110488128 LOC106570315 coding upstream 243356 23227922 ~ 23242628 (-)
G2308651 NA non-coding downstream 141675 22841393 ~ 22841745 (-)
G2308615 NA non-coding downstream 212937 22770274 ~ 22770483 (-)
G2308613 NA non-coding downstream 213936 22769271 ~ 22769484 (-)
G2308611 NA non-coding downstream 214997 22768209 ~ 22768423 (-)
G2308409 NA non-coding downstream 229115 22754072 ~ 22754305 (-)
G2308758 NA non-coding upstream 28029 23012595 ~ 23013814 (-)
G2308762 NA non-coding upstream 39089 23023655 ~ 23024228 (-)
G2308778 NA non-coding upstream 81550 23066116 ~ 23066655 (-)
G2308781 NA non-coding upstream 87965 23072531 ~ 23072897 (-)
G2308785 NA non-coding upstream 95972 23080538 ~ 23080777 (-)
LOC110489405 LOC106570343 other downstream 564082 22416566 ~ 22498043 (-)
LOC110488089 LOC106570363 other downstream 1393863 21566593 ~ 21613473 (-)
lsm10 lsm10 other downstream 1469957 21511423 ~ 21513463 (-)
G2307160 NA other downstream 1777291 21205723 ~ 21206129 (-)
G2310381 LOC106570311 other upstream 775949 23760515 ~ 23761351 (-)
G2310415 NA other upstream 831731 23816297 ~ 23818006 (-)
umad1 LOC106588684 other upstream 977748 23962314 ~ 23979279 (-)
G2311141 NA other upstream 2178126 25162692 ~ 25163130 (-)
G2312079 LOC106582599 other upstream 2984417 25968983 ~ 25969361 (-)

Expression


Co-expression Network