LOC110488118


Basic Information

Item Value
gene id LOC110488118
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 22985009 ~ 22987071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468348.2
CTACAACAGCGCGTCCACCAAAAACTCAATGTTGTTACCATGAAAAACCCAGAAAATGCATGCTGGAAGACGCGTATGACGTCAAAAACGTCACAGGGTATAAATACCAAGGCCCTCCCCTTCCAGTTCATTCCTGGATTTGTTCTGAGGTATTTTGTCTGAAGAGTGGCCGTCGAGGAATTTGAATACCTAATAAAAAACGTTTTCTTCAATTAATTGACATTTCATTACTAGTTTTGCCTCCAGTTTGTTCGTCGGAATAGCTTTATTTTAGCTGCCACAACCCCGcccaaacattgtcagtagaatggcctgtactgaagaactcagtgactttcaacgtggcaccgtcataggatgccacctttccaacaagtcagtaagTCAAATTTCTGCACAGCTAGAACTGCCCAGGTCAACTgtgagtgctgttattgtggagTGGAAACGTCTGGGAGCAACAACTGCTGAGCCtcgaagtggtaagccacacaagctcacagaacgggaccggcaAGTGCTGTAGCGTGAAGATAatgtctgtcctctgttgcaacacactacagagttccaaactgcctctgaaagcaacatcACCACGAATGTTTGttgggagcttaatgaaatgggtttccatggccaaccagcctcacacaagcctaagatcaccatgccaagcgtctgctggagtggtgtaagcCAGATAGACTTTGAGGACTACAAACAGGTTCTGGAAACACTGGGGGAGACCCTGGTCCACAAGGTCAAAGAGTGACCTACCTACTGCAGAACCAGGGCTCTATTGGCACTATATTCCCTGTACTGTACCATTTCtcaccagagcactatgggccctggtcaaatgtactgcactatgtagggaatagagttccaaCAGACCCAGGAGGAAATAGAAATGTAATGCAAAATAACCTACCGCTGAAGCTGGCTATGTCATTAGCTCAGTGCATCTCGATAGTCTAACGTGGCTTTGTTTCCTTGTCTCACCTCACCTATTTGAATAGGCATCATGGCTTAAGTCTCTCCCAAATCAGTTTATTTGAAGAAAGGTGTGGCGAGGAAGTCACGTTAAGAGTATTGAGAATACACCCCTGGTGTACTGCAGTATCCTCTCGGCCTATGAGATGTATACATTTTCTTGAGTCCAATTTGCCACCTTGCCCCCCTCCACACAACTGTATATCTGAAAAGATAGGGTGTGATTTGGAATTCAGAATTTGACTGGACAAGTGGGCATGTCTCACCCAGGTGACAATGGGACAGAAAGAAAGCAATATGCTGAAGTATTTCTATTATAGAGGAAATGGCAATACATTACCAGTGGAACCACACATGTAGAAACCAGGCTCTTATTACCTGGGAATAAACATGTTGACACCTGTATGATTAAGTATTTACTACAGACAAAAAGGAAATTAAATAAATTGATTTTGCaatgtctttatttatttattacaatgTCTTTGTTGTACAACTTGTCTCTGAATACAACTGAGCAGATTAGACAGATTTCTCATCAATGGTCCATATGGTAAGTAGCATGTACTGTACATGAGCTGATAATTCACTTATCAGtcatcctgttgcctagtcactttacctctcccaatatatataaataaatacacacacatctccgagtggcacagcggtctaaggcactgcatttcagtgctagaggtgtcactacagaccctggttcgattccaagcTGTATTACAactagccgtgattgggagtcccatagggcaacgcacaattggtccagcgtggttaggggttttccggggtaggctgtcattgttaataaacatttgttcttaactgacttgtctaattaagggttaaataaaaaatat
>TU2640632
CTGGATTTGTTCTGAGGTATTTTGTCTGAAGAGTGGCCGTCGAGGAATTTGAATACCTAATAAAAAACGTTTTCTTCAATTAATTGACATTTCATTACTAGTTTTGCCTCCAGTTTGTTCGTCGGAATAGCTTTATTTTAGCTGCCACAACCCCGcccaaacattgtcagtagaatggcctgtactgaagaactcagtgactttcaacgtggcaccgtcataggatgccacctttccaacaagtcagtaagTCAAATTTCTGCACAGCTAGAACTGCCCAGGTCAACTgtgagtgctgttattgtggagTGGAAACGTCTGGGAGCAACAACTGCTGAGCCtcgaagtggtaagccacacaagctcacagaacgggaccggcaAGTGCTGTAGCGTGAAGATAatgtctgtcctctgttgcaacacactacagagttccaaactgcctctgaaagcaacatcACCACGAATGTTTGttgggagcttaatgaaatgggtttccatggccaaccagcctcacacaagcctaagatcaccatgccaagcgtctgctggagtggtgtaagcCAGATAGACTTTGAGGACTACAAACAGGTTCTGGAAACACTGGGGGAGACCCTGGTCCACAAGGTCAAAGAGTGACCTACCTACTGCAGAACCAGGGCTCTATTGGCACTATATTCCCTGTACTGTACCATTTCtcaccagagcactatgggccctggtcaaatgtactgcactatgtagggaatagagttccaaCAGACCCAGGAGGAAATAGAAATGTAATGCAAAATAACCTACCGCTGAAGCTGGCTATGTCATTAGCTCAGTGCATCTCGATAGTCTAACGTGGCTTTGTTTCCTTGTCTCACCTCACCTATTTGAATAGGCATCATGGCTTAAGTCTCTCCCAAATCAGTTTATTTGAAGAAAGGTGTGGCGAGGAAGTCACGTTAAGAGTATTGAGAATACACCCCTGGTGTACTGCAGTATCCTCTCGGCCTATGAGATGTATACATTTTCTTGAGTCCAATTTGCCACCTTGCCCCCCTCCACACAACTGTATATCTGAAAAGATAGGGTGTGATTTGGAATTCAGAATTTGACTGGACAAGTGGGCATGTCTCACCCAGGTGACAATGGGACAGAAAGAAAGCAATATGCTGAAGTATTTCTATTATAGAGGAAATGGCAATACATTACCAGTGGAACCACACATGTAGAAACCAGGCTCTTATTACCTGGGAATAAACATGTTGACACCTGTATGATTAAGTATTTACTACAGACAAAAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468348.2 False 1880 mRNA 0.43 2 22985009 22987071
TU2640632 True 1299 lncRNA 0.45 2 22985142 22986623

Neighbor

gene id symbol gene type direction distance location
LOC110488117 abcf1 coding upstream 10124 22956174 ~ 22974885 (+)
LOC110488113 LOC106570326 coding upstream 36902 22929891 ~ 22948107 (+)
LOC110488115 lpcat1 coding upstream 55622 22895023 ~ 22929387 (+)
mrpl36 LOC106570330 coding upstream 95274 22886143 ~ 22889735 (+)
LOC110488110 LOC106570331 coding upstream 113119 22865788 ~ 22871890 (+)
LOC110488120 LOC106570322 coding downstream 4408 22991479 ~ 23005898 (+)
LOC110488122 LOC100136469 coding downstream 25481 23012552 ~ 23017016 (+)
LOC110489407 LOC106588710 coding downstream 75026 23062097 ~ 23069768 (+)
LOC110488124 LOC106570319 coding downstream 85446 23072517 ~ 23076040 (+)
LOC110488125 LOC106570318 coding downstream 120911 23107982 ~ 23120043 (+)
G2308517 NA non-coding upstream 71983 22911533 ~ 22913026 (+)
G2308467 NA non-coding upstream 132678 22851746 ~ 22852331 (+)
G2308413 NA non-coding upstream 222303 22762394 ~ 22762706 (+)
G2308287 NA non-coding upstream 260595 22719598 ~ 22724414 (+)
G2308253 NA non-coding upstream 329218 22655473 ~ 22655791 (+)
G2308550 NA non-coding downstream 41975 23029046 ~ 23029589 (+)
G2308563 NA non-coding downstream 57524 23044595 ~ 23045366 (+)
G2308564 NA non-coding downstream 59154 23046225 ~ 23047474 (+)
G2308565 LOC106570320 non-coding downstream 61475 23048546 ~ 23051189 (+)
G2308224 NA other upstream 380288 22604320 ~ 22604721 (+)
c32h5orf49 cssa14h5orf49 other upstream 568717 22405971 ~ 22416346 (+)
G2306825 NA other upstream 1397575 21587088 ~ 21587434 (+)
G2306688 NA other upstream 1661113 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 1673131 21307432 ~ 21311878 (+)
LOC110488133 NA other downstream 992279 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 1164616 24151527 ~ 24157473 (+)
G2311528 NA other downstream 2748123 25735194 ~ 25736847 (+)
G2311978 NA other downstream 2932081 25919152 ~ 25919800 (+)
G2312300 NA other downstream 3338081 26325152 ~ 26325383 (+)

Expression


Co-expression Network