LOC110488122 (LOC100136469)



Basic Information


Item Value
gene id LOC110488122
gene name LOC100136469
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 23012552 ~ 23017016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021560150.2
GGAGGGGCCATCAGGTGAGCTTGGGGCCGGTGTATAAGAGCATGTCCAGGTGATAGAGAAGGGACACGGCAGTGCGAGTAGCAGCAGAGAAAAGGAGACTTACAAAGGTGCCACGGAGAACAGAAAGGTATTAATCATGATCCGAGGTCTGCTGTCGGTGTTGTTTGTCCTTGTGGCCGTAGCTGTGTCTTCATCTTTGGCCAAGCCTGAGAAGAACATTGCCAAGAGGGGGAAGAGGATCCCTCAGACTCTCTCTAGAGGCTGGGGTGATCAGCTGATCTGGGCTCAAACCTATGAGGAGGCTCTGTACTGGGCCAGGGCACAGAACAAGCCTCTGATGGTCATCTTTCACCTGGAGGACTGTCCCCACAGCGCATCCATGAAGAAGGCCTTCGCTGAAGACAAGGACATCCAGAAGGTACTTGATGAAGACTTCATCATTCTCAATCTGGTGTATGAAACCACAGACAAGCATCTCTCCCCTGATGGCCAGTATGTCCCCAGAATCATCTTTGTCGaTCCCTCTATGACAGTGAGAGCTGACATCACAGGACGCTACTCCAACCGCATGTACGCCTATGAGCCTTCTGACACCCAACTCTTGTTGAGCAACATGCAGAAGGCCAAGAAGCTGCTGAAGACTGAGTTGTAAGCACTGACAATGCATGTGACCCGTTGACCTTTGCCTGTGACTTCAGAGGTTTTCTGAACATTCTCAGAATGATCTCTGGAGCCTAGGAGTCAGCCAGTGGGATACTGTCACCATGTAAACCTAAGCACTGGAAAAAACTAGTCTTCACTTTCACAAACTAATttaaatgttttggggggattttCCCTGAAACTCTGTCTACATTTGTAATGTATTGCTGTACATCTAAGATGTATTTTTATTAAATATAGTGCAATTCTTAAA
>XM_021560151.2
GAGCTTGGGGCCGGTGTATAAGAGCATGTCCAGGTGATAGAGAAGGGACACGGCAGTGCGAGTAGCAGCAGAGAAAAGGAGACTTACAAAGGTGCCACGGAGAACAGGTATTAATCATGATCCGAGGTCTGCTGTCGGTGTTGTTTGTCCTTGTGGCCGTAGCTGTGTCTTCATCTTTGGCCAAGCCTGAGAAGAACATTGCCAAGAGGGGGAAGAGGATCCCTCAGACTCTCTCTAGAGGCTGGGGTGATCAGCTGATCTGGGCTCAAACCTATGAGGAGGCTCTGTACTGGGCCAGGGCACAGAACAAGCCTCTGATGGTCATCTTTCACCTGGAGGACTGTCCCCACAGCGCATCCATGAAGAAGGCCTTCGCTGAAGACAAGGACATCCAGAAGGTACTTGATGAAGACTTCATCATTCTCAATCTGGTGTATGAAACCACAGACAAGCATCTCTCCCCTGATGGCCAGTATGTCCCCAGAATCATCTTTGTCGaTCCCTCTATGACAGTGAGAGCTGACATCACAGGACGCTACTCCAACCGCATGTACGCCTATGAGCCTTCTGACACCCAACTCTTGTTGAGCAACATGCAGAAGGCCAAGAAGCTGCTGAAGACTGAGTTGTAAGCACTGACAATGCATGTGACCCGTTGACCTTTGCCTGTGACTTCAGAGGTTTTCTGAACATTCTCAGAATGATCTCTGGAGCCTAGGAGTCAGCCAGTGGGATACTGTCACCATGTAAACCTAAGCACTGGAAAAAACTAGTCTTCACTTTCACAAACTAATttaaatgttttggggggattttCCCTGAAACTCTGTCTACATTTGTAATGTATTGCTGTACATCTAAGATGTATTTTTATTAAATATAGTGCAATTCTTAAA

Function


NR:

description
anterior gradient protein 2 homolog

GO: NA

KEGG:

id description
K20356 AGR2; anterior gradient protein 2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021560150.2 False 916 mRNA 0.48 8 23012552 23017016
XM_021560151.2 True 896 mRNA 0.48 8 23012568 23017016

Neighbor


gene id symbol gene type direction distance location
LOC110488120 LOC106570322 coding upstream 6654 22991479 ~ 23005898 (+)
LOC110488118 NA coding upstream 25481 22985009 ~ 22987071 (+)
LOC110488117 abcf1 coding upstream 37667 22956174 ~ 22974885 (+)
LOC110488113 LOC106570326 coding upstream 64445 22929891 ~ 22948107 (+)
LOC110488115 lpcat1 coding upstream 83165 22895023 ~ 22929387 (+)
LOC110489407 LOC106588710 coding downstream 45081 23062097 ~ 23069768 (+)
LOC110488124 LOC106570319 coding downstream 55501 23072517 ~ 23076040 (+)
LOC110488125 LOC106570318 coding downstream 90966 23107982 ~ 23120043 (+)
LOC118946519 NA coding downstream 181991 23199004 ~ 23214618 (+)
LOC110489408 LOC106588717 coding downstream 283554 23300570 ~ 23469848 (+)
G2308517 NA non-coding upstream 99526 22911533 ~ 22913026 (+)
G2308467 NA non-coding upstream 160221 22851746 ~ 22852331 (+)
G2308413 NA non-coding upstream 249846 22762394 ~ 22762706 (+)
G2308287 NA non-coding upstream 288138 22719598 ~ 22724414 (+)
G2308550 NA non-coding downstream 12030 23029046 ~ 23029589 (+)
G2308563 NA non-coding downstream 27579 23044595 ~ 23045366 (+)
G2308564 NA non-coding downstream 29209 23046225 ~ 23047474 (+)
G2308565 LOC106570320 non-coding downstream 31530 23048546 ~ 23051189 (+)
G2308224 NA other upstream 407831 22604320 ~ 22604721 (+)
c32h5orf49 cssa14h5orf49 other upstream 596260 22405971 ~ 22416346 (+)
G2306825 NA other upstream 1425118 21587088 ~ 21587434 (+)
G2306688 NA other upstream 1688656 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 1700674 21307432 ~ 21311878 (+)
LOC110488133 NA other downstream 962334 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 1134671 24151527 ~ 24157473 (+)
G2311528 NA other downstream 2718178 25735194 ~ 25736847 (+)
G2311978 NA other downstream 2902136 25919152 ~ 25919800 (+)
G2312300 NA other downstream 3308136 26325152 ~ 26325383 (+)

Expression



Co-expression Network