LOC110489407 (LOC106588710)


Basic Information

Item Value
gene id LOC110489407
gene name LOC106588710
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 23062097 ~ 23069768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041391.1
atcttccctacatctgtcactccccttggttctttcctcaggtgttatggACTTTGTTTTCATGTCGCCTGTtgaaggggagggatggagatggtttTCCTCAGTACcaggagaagttcattagagaCTGCATCAGGAAGTTTCCCTGCTGTGAAGCCGCACTGCTACAGCAGCAGGTCATGAGCATCGCAACAGTGGAGATCGGTAACGACCAGACAGCGTTCTCAGTATTAACCCAGGCTCTCATGGGTAAGATGACCTTCATAGATGCTGATTTCTGCACTacgtgtggagagagaggggcagagaagaGATGTTCCCTCTGCAACATGGTGACTTACTGTGGCCTGATTTGTCAGCGACTCCACTGCCCCACCCATAAGATCTGTAGAGGACTGCAGGAGAAGGATACCCCGAGACTGAGGGAGCACTGTGACGAGGAGAGTGACATGGTGAAGGAGACAGCCAGCTTCCTGGCAGAGCTGCGTTTTTAAGGCAGAGGAGCATTGCGTCGTTAGGGTGTCCCAGTCCCTCAGCGCCAGACCAGCTAAACTGTCCCTCCACATCCTCAGAGGGACCACTGTCCTGCCACCAGGAATGAGAAGGACTGCTGGTGTTCTTTTCTACTGGGTAGTTAATTGATTCATTGATGAAATGTTACTGATTGGCCAGAGTTCAGTGAAATTAATAATGAAGTTATATTGAACTGAATTGATTCCATTCACTTGGTGTATGAGGTCTGAATCAATCCCTGATTTAAAGGAGAATGATGAAAATCAGCATTATTACTGATTGGCCAGGATGTCCAGATTGAGAGAAAGGGGAATGATGAAAATCAGCATTATTACTGATTGGCCAGGATGTCCAGattgagagaaaggggagagtgaGGATGAATGCTTTATTCACCAAGCAGCTGGACTGGAGTTTAAGGAAGGACTGTTACTATGGACCCAATGAGGTCTATTCTGTTTAGAATAGGGGAGACTGAAGTATTCAGGGTGTGTATATGATGCACAATAGCATATTGggtgcgtttacacaggcagcccaactcTGATCTTTTGCCCCCCAAACATATTTTGACCAGTCAGATCAGATCTTTTGCTGAAAATTGGGCAAAAGATAAGAATTGGACTGCCAGTGTAAAAACAGCCATTGAGGTGTAGTTGTATTGGCTCTAATGTGACTTGCTAGTTTGCATGTCTTTTGAGCAAATTCTTTCTTATTTCAAATGTGAGCCTTTAATAATCTTTAACGTCTTAAAATAACAATTTCCTCCCTTACATTTGTAATGTGAAAAATACTTTCATGTATAAATAGGACCACCTGACTGAACAATACGTGTCATTGTTATGGCAGTGGATAAAACACACAATATGTGTTACTCTAAACTTGTGATTTCCTTCTATAACTTGAGACCCATGGATCATCTTACCAGTGATGTATCCATATCAGTCCATGTCACAGATGATCCACGGATGACCCAATGACGATCTGACTTCAATGCTGGACCAACATTTACACCCAATTGAAAATGTAAAACTGGGAACCAAAACAAATGGCAATCACATCAATAAAGA
>XM_036971658.1
ATTAAaacactccctgtacctgcttcctgactctcagcacaCTCGTTACAGCTGTAATAATTTTATAGTAATAATTTCATTAGCCTAGGTTACTTCCCATAGTAGTCGCAATAACACTatgacaaattaaatatatttgtaTACCAAACTGCTGGAGTGCAGCTGTTTTCACAATCGCAGTTTCTTGCCAAATTGTATACCTATGGGCCTGTtgaaggggagggatggagatggtttTCCTCAGTACcaggagaagttcattagagaCTGCATCAGGAAGTTTCCCTGCTGTGAAGCCGCACTGCTACAGCAGCAGGTCATGAGCATCGCAACAGTGGAGATCGGTAACGACCAGACAGCGTTCTCAGTATTAACCCAGGCTCTCATGGGTAAGATGACCTTCATAGATGCTGATTTCTGCACTacgtgtggagagagaggggcagagaagaGATGTTCCCTCTGCAACATGGTAGGAAAACCACCTCCGAACTCTGATACAGAAGCACGTGGTTTCTCTCATTTGTTTCCCTCTCTATTACTTTGGTTACACTTAATGATTTCAGCCATGAATACGCCATGCTTATATgctaataaatgttttattttactaCTACAGGTGACTTACTGTGGCCTGATTTGTCAGCGACTCCACTGCCCCACCCATAAGATCTGTAGAGGACTGCAGGAGAAGGATACCCCGAGACTGAGGGAGCACTGTGACGAGGAGAGTGACATGGTGAAGGAGACAGCCAGCTTCCTGGCAGAGCTGCGTTTTTAAGGCAGAGGAGCATTGCGTCGTTAGGGTGTCCCAGTCCCTCAGCGCCAGACCAGCTAAACTGTCCCTCCACATCCTCAGAGGGACCACTGTCCTGCCACCAGGAATGAGAAGGACTGCTGGTGTTCTTTTCTACTGGGTAGTTAATTGATTCATTGATGAAATGTTACTGATTGGCCAGAGTTCAGTGAAATTAATAATGAAGTTATATTGAACTGAATTGATTCCATTCACTTGGTGTATGAGGTCTGAATCAATCCCTGATTTAAAGGAGAATGATGAAAATCAGCATTATTACTGATTGGCCAGGATGTCCAGATTGAGAGAAAGGGGAATGATGAAAATCAGCATTATTACTGATTGGCCAGGATGTCCAGattgagagaaaggggagagtgaGGATGAATGCTTTATTCACCAAGCAGCTGGACTGGAGTTTAAGGAAGGACTGTTACTATGGACCCAATGAGGTCTATTCTGTTTAGAATAGGGGAGACTGAAGTATTCAGGGTGTGTATATGATGCACAATAGCATATTGggtgcgtttacacaggcagcccaactcTGATCTTTTGCCCCCCAAACATATTTTGACCAGTCAGATCAGATCTTTTGCTGAAAATTGGGCAAAAGATAAGAATTGGACTGCCAGTGTAAAAACAGCCATTGAGGTGTAGTTGTATTGGCTCTAATGTGACTTGCTAGTTTGCATGTCTTTTGAGCAAATTCTTTCTTATTTCAAATGTGAGCCTTTAATAATCTTTAACGTCTTAAAATAACAATTTCCTCCCTTACATTTGTAATGTGAAAAATACTTTCATGTATAAATAGGACCACCTGACTGAACAATACGTGTCATTGTTATGGCAGTGGATAAAACACACAATATGTGTTACTCTAAACTTGTGATTTCCTTCTATAACTTGAGACCCATGGATCATCTTACCAGTGATGTATCCATATCAGTCCATGTCACAGATGATCCACGGATGACCCAATGACGATCTGACTTCAATGCTGGACCAACATTTACACCCAATTGAAAATGTAAAACTGGGAACCAAAACAAATGGCAATCACATCAATAAAGA
>XM_036971659.1
ctgtacctgcttcctgactctcagcacaCTCGTTACAGCTGTAATAATTTTATAGTAATAATTTCATTAGCCTAGGTTACTTCCCATAGTAGTCGCAATAACACTatgacaaattaaatatatttgtaTACCAAACTGCTGGAGTGCAGCTGTTTTCACAATCGCAGTTTCTTGCCAAATTGTATACCTATGGGCCTGTtgaaggggagggatggagatggtttTCCTCAGTACcaggagaagttcattagagaCTGCATCAGGAAGTTTCCCTGCTGTGAAGCCGCACTGCTACAGCAGCAGGTCATGAGCATCGCAACAGTGGAGATCGGTAACGACCAGACAGCGTTCTCAGTATTAACCCAGGCTCTCATGGGTAAGATGACCTTCATAGATGCTGATTTCTGCACTacgtgtggagagagaggggcagagaagaGATGTTCCCTCTGCAACATGGTGACTTACTGTGGCCTGATTTGTCAGCGACTCCACTGCCCCACCCATAAGATCTGTAGAGGACTGCAGGAGAAGGATACCCCGAGACTGAGGGAGCACTGTGACGAGGAGAGTGACATGGTGAAGGAGACAGCCAGCTTCCTGGCAGAGCTGCGTTTTTAAGGCAGAGGAGCATTGCGTCGTTAGGGTGTCCCAGTCCCTCAGCGCCAGACCAGCTAAACTGTCCCTCCACATCCTCAGAGGGACCACTGTCCTGCCACCAGGAATGAGAAGGACTGCTGGTGTTCTTTTCTACTGGGTAGTTAATTGATTCATTGATGAAATGTTACTGATTGGCCAGAGTTCAGTGAAATTAATAATGAAGTTATATTGAACTGAATTGATTCCATTCACTTGGTGTATGAGGTCTGAATCAATCCCTGATTTAAAGGAGAATGATGAAAATCAGCATTATTACTGATTGGCCAGGATGTCCAGATTGAGAGAAAGGGGAATGATGAAAATCAGCATTATTACTGATTGGCCAGGATGTCCAGattgagagaaaggggagagtgaGGATGAATGCTTTATTCACCAAGCAGC
>XR_005041392.1
tgtgttgtgtccagtCTGTCAGAATCAGATGGGGCAGCAGAGATGACAGTATATACTTTGGTGCTGCTGCCCGCTTTAGATCTGTCTGAAGAGATCTATCTGTCTGGACGTGAAcgcaggacacagagagagCCTGTtgaaggggagggatggagatggtttTCCTCAGTACcaggagaagttcattagagaCTGCATCAGGAAGTTTCCCTGCTGTGAAGCCGCACTGCTACAGCAGCAGGTCATGAGCATCGCAACAGTGGAGATCGGTAACGACCAGACAGCGTTCTCAGTATTAACCCAGGCTCTCATGGGTAAGATGACCTTCATAGATGCTGATTTCTGCACTacgtgtggagagagaggggcagagaagaGATGTTCCCTCTGCAACATGGTAGGAAAACCACCTCCGAACTCTGATACAGAAGCACGTGGTTTCTCTCATTTGTTTCCCTCTCTATTACTTTGGTTACACTTAATGATTTCAGCCATGAATACGCCATGCTTATATgctaataaatgttttattttactaCTACAGGTGACTTACTGTGGCCTGATTTGTCAGCGACTCCACTGCCCCACCCATAAGATCTGTAGAGGACTGCAGGAGAAGGATACCCCGAGACTGAGGGAGCACTGTGGTAAACTACGCACTCCTATCTGTTGAAAACATATACAATAGACGAGGAGAGTGACATGGTGAAGGAGACAGCCAGCTTCCTGGCAGAGCTGCGTTTTTAAGGCAGAGGAGCATTGCGTCGTTAGGGTGTCCCAGTCCCTCAGCGCCAGACCAGCTAAACTGTCCCTCCACATCCTCAGAGGGACCACTGTCCTGCCACCAGGAATGAGAAGGACTGCTGGTGTTCTTTTCTACTGGGTAGTTAATTGATTCATTGATGAAATGTTACTGATTGGCCAGAGTTCAGTGAAATTAATAATGAAGTTATATTGAACTGAATTGATTCCATTCACTTGGTGTATGAGGTCTGAATCAATCCCTGATTTAAAGGAGAATGATGAAAATCAGCATTATTACTGATTGGCCAGGATGTCCAGATTGAGAGAAAGGGGAATGATGAAAATCAGCATTATTACTGATTGGCCAGGATGTCCAGattgagagaaaggggagagtgaGGATGAATGCTTTATTCACCAAGCAGCTGGACTGGAGTTTAAGGAAGGACTGTTACTATGGACCCAATGAGGTCTATTCTGTTTAGAATAGGGGAGACTGAAGTATTCAGGGTGTGTATATGATGCACAATAGCATATTGggtgcgtttacacaggcagcccaactcTGATCTTTTGCCCCCCAAACATATTTTGACCAGTCAGATCAGATCTTTTGCTGAAAATTGGGCAAAAGATAAGAATTGGACTGCCAGTGTAAAAACAGCCATTGAGGTGTAGTTGTATTGGCTCTAATGTGACTTGCTAGTTTGCATGTCTTTTGAGCAAATTCTTTCTTATTTCAAATGTGAGCCTTTAATAATCTTTAACGTCTTAAAATAACAATTTCCTCCCTTACATTTGTAATGTGAAAAATACTTTCATGTATAAATAGGACCACCTGACTGAACAATACGTGTCATTGTTATGGCAGTGGATAAAACACACAATATGTGTTACTCTAAACTTGTGATTTCCTTCTATAACTTGAGACCCATGGATCATCTTACCAGTGATGTATCCATATCAGTCCATGTCACAGATGATCCACGGATGACCCAATGACGATCTGACTTCAATGCTGGACCAACATTTACACCCAATTGAAAATGTAAAACTGGGAACCAAAACAAATGGCAATCACATCAATAAAGA
>TU2640639
AGAGATCTATCTGTCTGGACGTGAAcgcaggacacagagagagCCTGTtgaaggggagggatggagatggtttTCCTCAGTACcaggagaagttcattagagaCTGCATCAGGAAGTTTCCCTGCTGTGAAGCCGCACTGCTACAGCAGCAGGTCATGAGCATCGCAACAGTGGAGATCGGTAACGACCAGACAGCGTTCTCAGTATTAACCCAGGCTCTCATGGGTAAGATGACCTTCATAGATGCTGATTTCTGCACTacgtgtggagagagaggggcagagaagaGATGTTCCCTCTGCAACATGGTGACTTACTGTGGCCTGATTTGTCAGCGACTCCACTGCCCCACCCATAAGATCTGTAGAGGACTGCAGGAGAAGGATACCCCGAGACTGAGGGAGCACTGTGGTAAACTACGCACTCCTATCTGTTGAAAACATATACAATAGACGAGGAGAGTGACATGGTGAAGGAGACAGCCAGCTTCCTGGCAGAGCTGCGTTTTTAAGGCAGAGGAGCATTGCGTCGTTAGGGTGTCCCAGTCCCTCAGCGCCAGACCAGCTAAACTGTCCCTCCACATCCTCAGAGGGACCACTGTCCTGCCACCAGGAATGAGAAGGACTGCTGGTGTTCTTTTCTACTGGGTAGTTAATTGATTCATTGATGAAATGTTACTGATTGGCCAGAGTTCAGTGAAATTAATAATGAAGTTATATTGAACTGAATTGATTCCATTCACTTGGTGTATGAGGTCTGAATCAATCCCTGATTTAAAGGAGAATGATGAAAATCAGCATTATTACTGATTGGCCAGGATGTCCAGATTGAGAGAAAGGGGAATGATGAAAATCAGCATTATTACTGATTGGCCAGGATGTCCAGattgagagaaaggggagagtgaGGATGAATGCTTTATTCACCAAGCAGCTGGACTGGAGTTTAAGGAAGGACTGTTACTATGGACCCAATGAGGTCTATTCTGTTTAGAATAGGGGAGACTGAAGTATTCAGGGTGTGTATATGATGCACAATAGCATATTGggtgcgtttacacaggcagcccaactcTGATCTTTTGCCCCCCAAACATATTTTGACCAGTCAGATCAGATCTTTTGCTGAAAATTGGGCAAAAGATAAGAATTGGACTGCCAGTGTAAAAACAGCCATTGAGGTGTAGTTGTATTGGCTCTAATGTGACTTGCTAGTTTGCATGTCTTTTGAGCAAATTCTTTCTTATTTCAAATGTGAGCCTTTAATAATCTTTAACGTCTTAAAATAACAATTTCCTCCCTTACATTTGTAATGTGAAAAATACTTTCATGTATAAATAGGACCACCTGACTGAACAATACGTGTCATTGTTATGGCAGTGGATAAAACACACAATATGTGTTACTCTAAACTTGTGATTTCCTTCTATAACTTGAGACCCATGGATCATCTTACCAGTGATGTATCCATATCAGTCCATGTCACAGATGATCCACGGATGACCCAATGACGATCTGACTTCAATGCTGGACCAACATTTACACCCAATTGAAAATGTAAAACTGGGAACCAAAACAAATGGCAATCACATCAATAAAGAGTGCCTTAATAGTTGTCCTTCAC

Function

NR:

description
ankyrin repeat and MYND domain-containing protein 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041391.1 False 1583 mRNA 0.44 5 23062097 23069745
XM_036971658.1 False 1870 mRNA 0.42 4 23062200 23069745
XM_036971659.1 False 1044 mRNA 0.46 5 23062213 23069079
XR_005041392.1 False 1836 mRNA 0.43 4 23063001 23069745
TU2640639 True 1623 lncRNA 0.44 5 23063090 23069768

Neighbor

gene id symbol gene type direction distance location
LOC110488122 LOC100136469 coding upstream 45081 23012552 ~ 23017016 (+)
LOC110488120 LOC106570322 coding upstream 56199 22991479 ~ 23005898 (+)
LOC110488118 NA coding upstream 75026 22985009 ~ 22987071 (+)
LOC110488117 abcf1 coding upstream 87212 22956174 ~ 22974885 (+)
LOC110488113 LOC106570326 coding upstream 113990 22929891 ~ 22948107 (+)
LOC110488124 LOC106570319 coding downstream 2772 23072517 ~ 23076040 (+)
LOC110488125 LOC106570318 coding downstream 38237 23107982 ~ 23120043 (+)
LOC118946519 NA coding downstream 129262 23199004 ~ 23214618 (+)
LOC110489408 LOC106588717 coding downstream 230825 23300570 ~ 23469848 (+)
LOC110488130 LOC106570312 coding downstream 406029 23475774 ~ 23540812 (+)
G2308565 LOC106570320 non-coding upstream 10908 23048546 ~ 23051189 (+)
G2308564 NA non-coding upstream 14623 23046225 ~ 23047474 (+)
G2308563 NA non-coding upstream 16731 23044595 ~ 23045366 (+)
G2308550 NA non-coding upstream 32508 23029046 ~ 23029589 (+)
G2308574 NA non-coding downstream 13194 23082939 ~ 23083251 (+)
G2308592 NA non-coding downstream 34952 23104697 ~ 23104902 (+)
G2308873 arl4a non-coding downstream 152788 23222533 ~ 23224830 (+)
G2308224 NA other upstream 457376 22604320 ~ 22604721 (+)
c32h5orf49 cssa14h5orf49 other upstream 645805 22405971 ~ 22416346 (+)
G2306825 NA other upstream 1474663 21587088 ~ 21587434 (+)
G2306688 NA other upstream 1738201 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 1750219 21307432 ~ 21311878 (+)
LOC110488133 NA other downstream 909605 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 1081942 24151527 ~ 24157473 (+)
G2311528 NA other downstream 2665449 25735194 ~ 25736847 (+)
G2311978 NA other downstream 2849407 25919152 ~ 25919800 (+)
G2312300 NA other downstream 3255407 26325152 ~ 26325383 (+)

Expression


Co-expression Network