LOC110488125 (LOC106570318)


Basic Information

Item Value
gene id LOC110488125
gene name LOC106570318
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 23107982 ~ 23120043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560155.2
tcctcccaccctccctccctctcattctctctcccaacTTCCCTGGAACCACCTTCTCCCTGGAACCACTCTGGCCTCagccgtctctcctctcctccgtctctcttctctgtctaccGTCTCCCTGTGTCCTGACACCCGAGCTCCAGCTCAGCAGAGTCAGTGTTTACCCGCGCTGTGCCTGGCAACAGGCTGCATGCTCGGGATAACCGGAGGCCCTACCTTTCAACGCTGCGATCTCTGCCTTCCTTCAGCCTCCTCCGATCACTTTCCCTGGGAACTAACGGGGAGCGCACggaggtgagaggtgagagagcCGTGGAGGAGAGCCCTGATTTGAGGCTCTGGGTCCACCCACCTCCCTCAACTGGCTTCAGTCTGCTCTACTCTCTGTCCTGCAACATCGCTGTCTTGTGGCCTCAATTAGTCACTCTGGTAGTTCCTGTAAGtttttgtggttgtgtgtgtggtggactTAGGGGGGTTCGTCTTTTGGGTGGATCTTGTGGAGCACTGTTATGGATCACTCCCTGTTTGGGTGCCTCCGTAGCCCCCACGCCCCGGCCCAGGGTCTGCACCCCCACCCTGCATTTAGCCAGTCCCCGCTGGCGCTGCACGGACGCTCTGACCACATATCCTACCCTGACCTGCCTGGCTCCTCACCCCCATGTGGGGGGTACCCTGGACCCGGGGAGGAGGGCGTGTACGGAGGGCAGCAACACCACCATCGTGGAGGACACCCGCATCAGCAGCACCCCCACCACCCACAGCACCAGACCCACCAGACTCCCTGGCATGTCCCCCAGATGCCCTCAACCAACACTAGGCATGGCCTCTGCCTACCTCCCCCAGACAGCCAAGTCTCAGAACGGTGTGGTGGGGGGACCCCAAATCTGTGTGGCTCCAACACCAACCCCAGTCTGGGAGGTAGTAGTGACCCCACAGGTGTATCCTGTGTCCCTGGGGACTTTGGACGACAGACGATGTCCCCGGACGAGACTGAACAGAGACGGAACAGTAAGGGGAAAGATGATTTGCACAGCTCAGATTCCCAGGACGGGAGCTATAAGTCTGACGTGAACAGCAAGCCCAGGAAGGAGAGGACAGCGTTCACCAAAGAACAGATCCGGGAACTGGAGTCAGAGTTTGCGCACCACAACTACCTGACGAGACTGAGGCGATATGAGATAGCAGTCAACCTCGACCTCACAGAAAGACAAGTAAAGGTGTGGTTCCAGAACAGAAGGATGAAGTGGAAGCGTGTTAAAGGAGGTCAACAGGGGGCAGCAGCGCGAGAGAAAGAACTGGTCAACGTGAAGAAGGGAACTCTGTTACCCTCAGAGTACTCTGGCATGGTGGGAGGACTACATCACTCCACTGGTTCCCCTGGTAATGAGGACAGTCACGACAGTGACCAGAGCTCAGAGCATGCTCACTTATGACCCTGACCTGCCACATATGCCACGCAGAGGTCAAAGGTTAAGTTTGCGGCCATTTGAACAAACGTCTAAaaatgcagtgagttgatgagATCATGTTGCATTTACAGGTACagcattacatacagtatgttgagaTTAGACTCAGAACTCAGAAAGAACACCTAGGCCTTTTCTCTCAGGAACCAGCAACAAACAGGTTTTCTGACTGAAGGTGTTTGTTGAGGAGTGAAGAAAGAAAGAAGTCAAGGTTAGCAAGAAGAAGAAGGAATGGAAGGAGCATGGAATTAACAACTGGATGTgtgaaataaaacaacaaatgaTATGCTTGTGAGCAAAGCCTCAACCTCATGAGACTGTAAATTGGGAATAAAATTGTATATTATTGTGAACATTCCACACGTGCCTTGATAGAATGGCTTGGATTTTTGAACTGTCAAATATAAaattctactgtatttactcCGTTTGGAATACAAAAGTCATCCAATTAGTTTTAAGTAAAAATGTGGAATTTAATTGAATAGTAGGCTATTACCGTGAGTTCTACTATGCTGATTTACTTACAACATAACTGAATGGTGCATATTAGCAAACATCTCCATTGGTTTTACATTTTGCTTCCACTAAGagtcttaaaagttaattttttttgtgaaaaatgtaTACTTTTATTACATATAAATCTGGGACATAATGGTTTCTGAAGTGAATAAAACTGATCAATCAAAA

Function

NR:

description
homeobox protein MOX-2-like

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09322 MEOX, MOX; homeobox protein MOX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560155.2 True 2171 mRNA 0.50 3 23107982 23120043

Neighbor

gene id symbol gene type direction distance location
LOC110488124 LOC106570319 coding upstream 31942 23072517 ~ 23076040 (+)
LOC110489407 LOC106588710 coding upstream 38237 23062097 ~ 23069768 (+)
LOC110488122 LOC100136469 coding upstream 90966 23012552 ~ 23017016 (+)
LOC110488120 LOC106570322 coding upstream 102084 22991479 ~ 23005898 (+)
LOC110488118 NA coding upstream 120911 22985009 ~ 22987071 (+)
LOC118946519 NA coding downstream 78964 23199004 ~ 23214618 (+)
LOC110489408 LOC106588717 coding downstream 180527 23300570 ~ 23469848 (+)
LOC110488130 LOC106570312 coding downstream 355731 23475774 ~ 23540812 (+)
LOC110488131 LOC106570311 coding downstream 638250 23758293 ~ 23883531 (+)
LOC118946518 NA coding downstream 694553 23814596 ~ 23818032 (+)
G2308592 NA non-coding upstream 3080 23104697 ~ 23104902 (+)
G2308574 NA non-coding upstream 24731 23082939 ~ 23083251 (+)
G2308568 NA non-coding upstream 41320 23066253 ~ 23066662 (+)
G2308873 arl4a non-coding downstream 102490 23222533 ~ 23224830 (+)
G2308882 LOC106570315 non-coding downstream 115904 23235947 ~ 23236457 (+)
G2308936 NA non-coding downstream 217453 23337496 ~ 23337695 (+)
G2308991 NA non-coding downstream 326108 23446151 ~ 23450031 (+)
G2308224 NA other upstream 503261 22604320 ~ 22604721 (+)
c32h5orf49 cssa14h5orf49 other upstream 691690 22405971 ~ 22416346 (+)
G2306825 NA other upstream 1520548 21587088 ~ 21587434 (+)
G2306688 NA other upstream 1784086 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 1796104 21307432 ~ 21311878 (+)
LOC110488133 NA other downstream 859307 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 1031644 24151527 ~ 24157473 (+)
G2311528 NA other downstream 2615151 25735194 ~ 25736847 (+)
G2311978 NA other downstream 2799109 25919152 ~ 25919800 (+)
G2312300 NA other downstream 3205109 26325152 ~ 26325383 (+)

Expression


Co-expression Network