LOC118946519


Basic Information

Item Value
gene id LOC118946519
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 23199004 ~ 23214618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041390.1
ACAAGCCTCTCCTACTCCGCGGCTGCATTGCAGTGCTTCTTGGTGGCAGTGCATGGGTGTGTGTTGAATAATGAATAAAAGCCCAGGGATTTGGAGTGTTGAAGTAATTAGAGATGGATCTTTACCAAGGAAGAGCCGCCAGAGGAGAGCAGACACAGttttgacccttgcctgtcctgactctgagcccacctgtaACGGCTCTCGTTGGTAGAAGGAAtactggaccaaagcgcagcgtggaaagtgttcatgatttttattttcaaaaaacactcaaacaaaaataacaaacttGAAACCGAAAGCACACAGTTTTGTCaggtacagacactaaacagaaaacaagatcctacaaaacccaaaaggaaaatgacaatttatatgtgatccccaatcagagacaacgatagacagctgcctctgattgggaaccacacacggccaaacacaaagaaatagaaaacatagactttcccatccgagtcacaccctgacctaaccaaacatagagaataataaggatctctaaggtcagggcgtgacaccaccTGCCTGACcgctctgcctgcccctgaccatgagcctgcctgctgacctgtacctttgccccacctctggatttgtcacgccctgatctgttccacctgtccctgtgattgtctctaccttctccaggtgtccctgtgtttcctgtctctctgtgccagttcatcttgtatgtttagtcaagtcaactaGTGTGTTTTTTCCCAGTACTCCTTTTTCTATTGTCTTTTGCTAGTCTTCTCGGTTTTGAccactgcctgactctggactactttcccgcctgcctgatcatcctgcctgccctgaccttgaatctgcctgcccttcggtacttattggactctgaactggttttgaccttttgcctgtacaCGACCATTCTCGTGCCTACCcctttttggattaataaacattgtaagactccaa
>TU2641078
AGAACAAGCCTCTCCTACTCCGCGGCTGCATTGCAGTGCTTCTTGGTGGCAGTGCATGGGTGTGTGTTGAATAATGAATAAAAGCCCAGGGATTTGGAGTGTTGAAGTAATTAGAGATGGATCTTTACCAAGGAAGAGCCGCCAGAGGAGAGCAGACACAGttttgacccttgcctgtcctgactctgagcccacctgtaACGGCTCTCGTTGGTAGAAGGAAtactggaccaaagcgcagcgtggaaagtgttcatgatttttattttcaaaaaacactcaaacaaaaataacaaacttGAAACCGAAAGCACACAGTTTTGTCaggtacagacactaaacagaaaacaagatcctacaaaacccaaaaggaaaatgacaatttatatgtgatccccaatcagagacaacgatagacagctgcctctgattgggaaccacacacggccaaacacaaagaaatagaaaacatagactttcccatccgagtcacaccctgacctaaccaaacatagagaataataaggatctctaaggtcagggcgtgacaccaccTGCCTGACcgctctgcctgcccctgaccatgagcctgcctgctgacctgtacctttgccccacctctggatttgtcacgccctgatctgttccacctgtccctgtgattgtctctaccttctccaggtgtccctgtgtttcctgtctctctgtgccagttcatcttgtatgtttagtcaagtcaactaGTGTGTTTTTTCCCAGTACTCCTTTTTCTATTGTCTTTTGCTAGTCTTCTCGGTTTTGAccactgcctgactctggactactttcccgcctgcctgatcatcctgcctgccctgaccttgaatctgcctgcccttcggtacttattggactc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041390.1 False 975 mRNA 0.47 2 23199007 23214618
TU2641078 True 895 lncRNA 0.47 2 23199004 23214535

Neighbor

gene id symbol gene type direction distance location
LOC110488125 LOC106570318 coding upstream 78964 23107982 ~ 23120043 (+)
LOC110488124 LOC106570319 coding upstream 122967 23072517 ~ 23076040 (+)
LOC110489407 LOC106588710 coding upstream 129262 23062097 ~ 23069768 (+)
LOC110488122 LOC100136469 coding upstream 181991 23012552 ~ 23017016 (+)
LOC110488120 LOC106570322 coding upstream 193109 22991479 ~ 23005898 (+)
LOC110489408 LOC106588717 coding downstream 85952 23300570 ~ 23469848 (+)
LOC110488130 LOC106570312 coding downstream 261156 23475774 ~ 23540812 (+)
LOC110488131 LOC106570311 coding downstream 543675 23758293 ~ 23883531 (+)
LOC118946518 NA coding downstream 599978 23814596 ~ 23818032 (+)
LOC110488133 NA coding downstream 764748 23979350 ~ 23981983 (+)
G2308592 NA non-coding upstream 94105 23104697 ~ 23104902 (+)
G2308574 NA non-coding upstream 115756 23082939 ~ 23083251 (+)
G2308873 arl4a non-coding downstream 7915 23222533 ~ 23224830 (+)
G2308882 LOC106570315 non-coding downstream 21329 23235947 ~ 23236457 (+)
G2308936 NA non-coding downstream 122878 23337496 ~ 23337695 (+)
G2308991 NA non-coding downstream 231533 23446151 ~ 23450031 (+)
G2308224 NA other upstream 594286 22604320 ~ 22604721 (+)
c32h5orf49 cssa14h5orf49 other upstream 782715 22405971 ~ 22416346 (+)
G2306825 NA other upstream 1611573 21587088 ~ 21587434 (+)
G2306688 NA other upstream 1875111 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 1887129 21307432 ~ 21311878 (+)
LOC110488142 LOC106570295 other downstream 937069 24151527 ~ 24157473 (+)
G2311528 NA other downstream 2520576 25735194 ~ 25736847 (+)
G2311978 NA other downstream 2704534 25919152 ~ 25919800 (+)
G2312300 NA other downstream 3110534 26325152 ~ 26325383 (+)
G2308568 NA non-coding upstream 132342 23066253 ~ 23066662 (+)

Expression


Co-expression Network