LOC110488142 (LOC106570295)


Basic Information

Item Value
gene id LOC110488142
gene name LOC106570295
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 24151527 ~ 24157473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560177.2
CGATTACAACGGGAACAATACACTGAGTGCCAAGGAGGGTCATAGGGGAACGTTTGAAAGTAATATTGACCATATGCAAAATTTCACAACGGATATTAGTCATCACACAGCTCCGAGGAAGTACCTGTCAAGTAAATGTACTTGCTTAATTGATATAAAGCGAATTAGATACCTGTCACCCTTCTATCCCTTGCTATATAACCTAGTGCAGTACTACCGTGTGGTCACAAAGACACAACAGGACCAAAGTGAAGGCATTAAAGAGCAGCAGAGCTCGCTTACTGGAGCAGAGATAGAACTGAGGCGAGGTTACAACCAAGGAGGGAACATATCATTTTTGCGCACGCTTGAGGCACTTATATGGAGAGAAGATACCAATTTCCGCAGGTGTCAACATCGAGCTCTCAAAAGTCATAGAGAGTGgctaaaaaacatttaaactcagtttacaAGTGCCCGAACAGCCTATTTCTACTTTTGAAAATCGAAACAAACGAAGAAAGACTTAAACGGCTGAAGAGTTGCACGCAACAGATTGCTGCATCATGAAATTACTGCTACCGCTTGTGATAGCTTTTCTTGCTATCGCCCAAGTTTTTTGTGAAGAAATTGGTCCAAAGGAAGATCTTGATTATTGGATGAACGATCAAATTACGGACGAGTGGCTGTCATCTGACCCATTCGGAGAGATACTGCGGAGAATGACGCGGAAACCGAGGCCGCATCAGTTCTTTGGCCTAATGGGGAAACGCTCCTCCGCAAATCCACAGATAACCCGAAAAAGGCATAAAATTAACTCCTTTGTTGGACTGATGGGTAAGAGGAGCCAAGAGAAACCAGATTCATATGAGTGGAACGCACTACAGAACTACGACAAGCGCCGCTAACCGGTTGGTCTTTCTTCAGTCCTCTGCTATTGGTCCGCTTCTCATCCAGTCATTCCTACAGACAAGTGGAAGGGGTGTCTGATGCCGAGTTTTGTTTTCTGCAAAATATGGATAGTTAGTCAAAGTTATTGTAAGTTAGCATAATAAAATGTCTTGTTTTCACATCGTGGTTTTGTAGCTGTATTGTACCTGACAGTGCCAATTTCATTTGTCCAGGAAGAAGGGAGCTCAAAGGAGGGCAGGAGTGTGATCTGAAGAGGGTTAGAAAATGACGGTCGTTTCCCCCAAAATTCACAGGTTTTCCGGAAATCCCGGTTTTAAGATTAAATCAGAAGGGAAATCGTAAACCAGAAATTCTCAGAATCCTCCGATCAGGATTTCTGGGAAATCCTGGGACATTTGGGAAAGTTTGCGGAATTTTGCCACGCGCGGTGTGATCTGGTACTCCTACCGTACTTTACAGAAACATAATGTTATTTAATGTATGTCACAGTATTAGTGCCATCAGCATAACATATGTTCCAGAGAATGGTATTGTCGTGGAACATCAAAGCAAAGCTCTACCCCAGGGTATGTAGAAAATTGCACTGCCAAGCCCACTGTCTAGTGCCTCATAAATGATTGTGCTGTAAATCAACTACACACTCTGGTACATGCTGCTCTATCAGAGCACGCTCTCGTTTAAATTGACTGTAAATCAAACTGTCATGTTTATAAAACCAAGATGTATGGTATGATATGACAGAATACTTGTGTGTGATTATGGCTTGATATATTAAAACTATTTTCTTTATTGGTGGAA
>TU2641635
CGAATTAGATACCTGTCACCCTTCTATCCCTTGCTATATAACCTAGTGCAGTACTACCGTGTGGTCACAAAGACACAACAGGACCAAAGTGAAGGCATTAAAGAGCAGCAGAGCTCGCTTACTGGAGCAGAGATAGAACTGAGGCGAGGTTACAACCAAGGAGGGAACATATCATTTTTGCGCACGCTTGAGGCACTTATATGGAGAGAAGATACCAATTTCCGCAGGTGTCAACATCGAGCTCTCAAAAGTCATAGAGAGTGgctaaaaaacatttaaactcagtttacaAGTGCCCGAACAGCCTATTTCTACTTTTGAAAATCGAAACAAACGAAGAAAGACTTAAACGGCTGAAGAGTTGCACGCAACAGATTGCTGCATCATGAAATTACTGCTACCGCTTGTGATAGCTTTTCTTGCTATCGCCCAAGTTTTTTGTGAAGAAATTGGTCCAAAGGAAGATCTTGATTATTGGATGAACGATCAAATTACGGACGAGTGGCTGTCATCTGACCCATTCGGAGAGATACTGCGGAGAATGACGCGGAAACCGAGGCCGCATCAGTTCTTTGGCCTAATGGGGAAACGCTCCTCCGCAAATCCACAGATAACCCGAAAAAGGCATAAAATTAACTCCTTTGTTGGACTGATGGGTAAGAGGAGCCAAGAGAAACCAGATTCATATGAGTGGAACGCACTACAGAACTACGACAAGCGCCGCTAACCGGTTGGTCTTTCTTCAGTCCTCTGCTATTGGTCCGCTTCTCATCCAGTCATTCCTACAGACAAGTGGAAGGGGTGTCTGATGCCGAGTTTTGTTTTCTGCAAAATATGGATAGTTAGTCAAAGTTATTGTAAGTTAGCATAATAAAATGTCTTGTTTTCACATCGTGGTTTTGTAGCTGTATTGTACCTGACAGTGCCAATTTCATTTGTCCAGGAAGAAGGGAGCTCAAAGGAGGGCAGGAGTGTGATCTGAAGAGGGTTAGAAAATGACGGTCGTTTCCCCCAAAATTCACAGGTTTTCCGGAAATCCCGGTTTTAAGATTAAATCAGAAGGGAAATCGTAAACCAGAAATTCTCAGAATCCTCCGATCAGGATTTCTGGGAAATCCTGGGACATTTGGGAAAGTTTGCGGAATTTTGCCACGCGCGGTGTGATCTGGTACTCCTACCGTACTTTACAGAAACATAATGTTATTTAATGTATGTCACAGTATTAGTGCCATCAGCATAACATATGTTCCAGAGAATGGTATTGTCGTGGAACATCAAAGCAAAGCTCTACCCCAGGGTATGTAGAAAATTGCACTGCCAAGCCCACTGTCTAGTGCCTCATAAATGATTGTGCTGTAAATCAACTACACACTCTGGTACATGCTGCTCTATCAGAGCACGCTCTCGTTTAAATTGACTGTAAATCAAACTGTCATGTTTATAAAACCAAGATGTATGGTATGATATGACAGAATACTTGTGTGTGATTATG

Function

NR:

description
protachykinin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560177.2 False 1689 mRNA 0.42 5 24151527 24157473
TU2641635 True 1492 TUCP 0.43 5 24151687 24157436

Neighbor

gene id symbol gene type direction distance location
sdhaf3 LOC106570289 coding upstream 67141 24065828 ~ 24084386 (+)
LOC110488137 LOC106606710 coding upstream 92210 24044440 ~ 24059317 (+)
LOC110488133 NA coding upstream 169544 23979350 ~ 23981983 (+)
LOC110488131 LOC106570311 coding upstream 267996 23758293 ~ 23883531 (+)
LOC118946518 NA coding upstream 333495 23814596 ~ 23818032 (+)
LOC110488145 LOC106570298 coding downstream 46297 24203770 ~ 24215296 (+)
ngly1 ngly1 coding downstream 252388 24409861 ~ 24420001 (+)
LOC110488151 LOC106570304 coding downstream 262701 24420174 ~ 24467243 (+)
LOC110488157 LOC106588669 coding downstream 639845 24797318 ~ 24915300 (+)
LOC110488160 LOC106588667 coding downstream 785954 24943427 ~ 24951969 (+)
G2309346 NA non-coding upstream 44415 24106224 ~ 24107112 (+)
G2309342 NA non-coding upstream 51691 24099564 ~ 24099836 (+)
G2309324 NA non-coding upstream 63412 24087692 ~ 24088115 (+)
G2309307 NA non-coding upstream 78522 24072597 ~ 24073005 (+)
G2309266 NA non-coding upstream 91407 24029073 ~ 24060120 (+)
G2309329 NA non-coding downstream 3022 24160495 ~ 24175394 (+)
G2309384 LOC106570297 non-coding downstream 12156 24169629 ~ 24170753 (+)
G2309397 NA non-coding downstream 36056 24193529 ~ 24193971 (+)
G2309398 NA non-coding downstream 39515 24196988 ~ 24209748 (+)
G2309330 NA non-coding downstream 60413 24217886 ~ 24218828 (+)
G2308224 NA other upstream 1546806 22604320 ~ 22604721 (+)
c32h5orf49 cssa14h5orf49 other upstream 1735235 22405971 ~ 22416346 (+)
G2306825 NA other upstream 2564093 21587088 ~ 21587434 (+)
G2306688 NA other upstream 2827631 21320623 ~ 21323896 (+)
G2311528 NA other downstream 1577721 25735194 ~ 25736847 (+)
G2311978 NA other downstream 1761679 25919152 ~ 25919800 (+)
G2312300 NA other downstream 2167679 26325152 ~ 26325383 (+)
G2312752 NA other downstream 2575831 26733304 ~ 26733645 (+)
LOC110488193 LOC106570239 other downstream 2659211 26816398 ~ 26820899 (+)

Expression


Co-expression Network