LOC110488160 (LOC106588667)


Basic Information

Item Value
gene id LOC110488160
gene name LOC106588667
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 24943427 ~ 24951969 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560247.2
CTCTGCACAAGCGCAGAGAATCATTGGGATTTCCTTGTTGTCAAAACACAGAATGGATGCTGTgattttagctaacgttagctagctaaatcacTTCAAAGTTACGTAGATACCCAGTTTATTGCTATAATAATTGTAATCTCTCTATTTGTCCAACTCTGTCAGCTTTTAAACCAAGGTTTTTGCGTTATCGAAATGGGGAAAGGTTGCAAAGTTGTGGTGTGTGGTTTGGCATCTGTAGGAAAAACAGCCATCCTTGAACAGCTGTTGTATGGCAATCACGCTGTTGGTTCAGAGTCCACTGAGACCCAGGAGGATGTGTATGTGGCATCGGTGGAAACGGATCGTGGTGTAAAGGAACAGTTACGTCTCTATGACACCAGGGGGCTCCACGACGGCCTGGACCTTCCCAAGCACTACTACTCTGTGGCAGACGGCTTTGTGCTGGTCTACAGTGTGGACAGCCTGGAGTCCTTTAAGAGGGTGGACGTCCTCAAGAAGGAAATAGACAAGTCCAGAGACAAGAAAGAGGTGATGGTGATCGTGCTAGGGAACAAGACAGACCTGCGTGAGCGTCGTCAGGTGGAGCAGGAGGCAGCGCAGCAGTGGGCACGGGGGGAGAAGGTCAAGCTCTGGGAGGTCAGCGTCACTGAGAGGAACTCTCTCATCGAACCCTTCACCATGCTTACCAGCCGCCTCACACAGCCTCAGAGCAAGTCTGCCTTCCCTCTTCCAGGACGCAAGAGCAAGGGCACGGCGTCCAACGACATATGAACTGAACTCAACCTCAAGAGCACCTAAGTTCCAAGTACTTAAGGGGGGAGATGTTACAGAGTAGGGTTGATGAGTTAGCCAGCCAACTTCAATTAATATTCTGACTTCATATCACCATGACTCTACATTCCATAGACAACCAACAACCCATATTAAGagctttttatttgattttttattgaCTAGCAAATCAAGAGATGTATCTTAATGTTTATCAAAGTGAGCTGGCTAAATGAGTGAGCCTGCTTTTTGGTGTCATCATACACCCCTCTGGTTTCAGTGTGTCCCATCCTATGGGATGACTATAGTAGCCGCTGTACAGCAAGGTCTAGGCCCATCTAATGCGCCTTTAGAGTGAGGCATATTACCTAGTGTGTGGCCTACTACCATATAGTGTACGGCATATTACTAGATACTACCTAGTGTATGGCCTACTACCATCTAGTGTACGGCATATTACTAGATACTACCTAGTGTATAGCCTACTACCATCTAGTGTACAGCATATTACTAGATACTACCTAGTGTATGGCCTACTACCATCTAGTGTACGGCATATTACTAGATACTACCTAGTATATGGCCTACTACCATCTAGTGTATGGCATATTACTAGATACTACCTAGTGTATGGCCTACTACCATCTAGTGTACGGCATATTACTAGATACTACCTAGTATATGGCCTACTACCATCTAGTGTACGGCATATTACTAGATACTACCTAGTGTATGGCCTACTACCATCTAGTGTATGGCCCGGtagcaataaaaaaaacaatggtACGACCTTGATCAGGTATGTTGCTCATGTCTGATTATTAAATGTCTGTAAATGGTTGTTTTTGTGTATTTGTTAATACAAAAGCTGTGTAGTTTATTAGCTTTGTACATGTTTTATTTACCTAATTTATTTGTCACTTTACTAAAAACTTCATTCCTAGCGGGTAGGAATGGGATGAAATGTGGCTTCTGTctctcctgaagtgtacactcgtTCGGTACTACAAACGTagaagcattggattggtggaggcatgggcCAGGACATTCCACCATATTTCTGAAAGTAATTTTCTGTGAATACTGAGGATGGAGGGATAATTTTAACATTGCCTGTGTCCTTCATGTCTTGTGTGAGACCTAGCTaaataaatgtcatattttatGCTGCTA
>XM_036971429.1
TCTGCACAAGCGCAGAGAATCATTGGGATTTCCTTGTTGTCAAAACACAGAATGGATGCTGTgattttagctaacgttagctagctaaatcacTTCAAAGTTACGTAGATACCCAGTTTATTGCTATAATAATTGTAATCTCTCTATTTGTCCAACTCTGTCAGCTTTTAAACCAAGGTACTTATTTTATTGcatcaagctaacgttagctaggtaactTTGGATGCGATGTTTACGAAGATGCTTCCATAGATAGAACAATGAGCAAATATTTGATGCTTCCCGCTAGTAGTTAGCCAGCTCATCTTCTAGCTATTTTACGTTTCATTTTCTGCTATTGCAGGTTTTTGCGTTATCGAAATGGGGAAAGGTTGCAAAGTTGTGGTGTGTGGTTTGGCATCTGTAGGAAAAACAGCCATCCTTGAACAGCTGTTGTATGGCAATCACGCTGTTGGTTCAGAGTCCACTGAGACCCAGGAGGATGTGTATGTGGCATCGGTGGAAACGGATCGTGGTGTAAAGGAACAGTTACGTCTCTATGACACCAGGGGGCTCCACGACGGCCTGGACCTTCCCAAGCACTACTACTCTGTGGCAGACGGCTTTGTGCTGGTCTACAGTGTGGACAGCCTGGAGTCCTTTAAGAGGGTGGACGTCCTCAAGAAGGAAATAGACAAGTCCAGAGACAAGAAAGAGGTGATGGTGATCGTGCTAGGGAACAAGACAGACCTGCGTGAGCGTCGTCAGGTGGAGCAGGAGGCAGCGCAGCAGTGGGCACGGGGGGAGAAGGTCAAGCTCTGGGAGGTCAGCGTCACTGAGAGGAACTCTCTCATCGAACCCTTCACCATGCTTACCAGCCGCCTCACACAGCCTCAGAGCAAGTCTGCCTTCCCTCTTCCAGGACGCAAGAGCAAGGGCACGGCGTCCAACGACATATGAACTGAACTCAACCTCAAGAGCACCTAAGTTCCAAGTACTTAAGGGGGGAGATGTTACAGAGTAGGGTTGATGAGTTAGCCAGCCAACTTCAATTAATATTCTGACTTCATATCACCATGACTCTACATTCCATAGACAACCAACAACCCATATTAAGagctttttatttgattttttattgaCTAGCAAATCAAGAGATGTATCTTAATGTTTATCAAAGTGAGCTGGCTAAATGAGTGAGCCTGCTTTTTGGTGTCATCATACACCCCTCTGGTTTCAGTGTGTCCCATCCTATGGGATGACTATAGTAGCCGCTGTACAGCAAGGTCTAGGCCCATCTAATGCGCCTTTAGAGTGAGGCATATTACCTAGTGTGTGGCCTACTACCATATAGTGTACGGCATATTACTAGATACTACCTAGTGTATGGCCTACTACCATCTAGTGTACGGCATATTACTAGATACTACCTAGTGTATAGCCTACTACCATCTAGTGTACAGCATATTACTAGATACTACCTAGTGTATGGCCTACTACCATCTAGTGTACGGCATATTACTAGATACTACCTAGTATATGGCCTACTACCATCTAGTGTATGGCATATTACTAGATACTACCTAGTGTATGGCCTACTACCATCTAGTGTACGGCATATTACTAGATACTACCTAGTATATGGCCTACTACCATCTAGTGTACGGCATATTACTAGATACTACCTAGTGTATGGCCTACTACCATCTAGTGTATGGCCCGGtagcaataaaaaaaacaatggtACGACCTTGATCAGGTATGTTGCTCATGTCTGATTATTAAATGTCTGTAAATGGTTGTTTTTGTGTATTTGTTAATACAAAAGCTGTGTAGTTTATTAGCTTTGTACATGTTTTATTTACCTAATTTATTTGTCACTTTACTAAAAACTTCATTCCTAGCGGGTAGGAATGGGATGAAATGTGGCTTCTGTctctcctgaagtgtacactcgtTCGGTACTACAAACGTagaagcattggattggtggaggcatgggcCAGGACATTCCACCATATTTCTGAAAGTAATTTTCTGTGAATACTGAGGATGGAGGGATAATTTTAACATTGCCTGTGTCCTTCATGTCTTGTGTGAGACCTAGCTaaataaatgtcatattttatGCTGCTA

Function

NR:

description
NF-kappa-B inhibitor-interacting Ras-like protein 1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17197 NKIRAS; NF-kappa-B inhibitor-interacting Ras-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560247.2 False 1950 mRNA 0.44 4 24943427 24951969
XM_036971429.1 True 2115 mRNA 0.43 3 24943428 24951969

Neighbor

gene id symbol gene type direction distance location
LOC110488157 LOC106588669 coding upstream 28127 24797318 ~ 24915300 (+)
LOC110488151 LOC106570304 coding upstream 476184 24420174 ~ 24467243 (+)
ngly1 ngly1 coding upstream 523426 24409861 ~ 24420001 (+)
LOC110488145 LOC106570298 coding upstream 728131 24203770 ~ 24215296 (+)
LOC110488142 LOC106570295 coding upstream 785954 24151527 ~ 24157473 (+)
LOC110488162 LOC106570281 coding downstream 98326 25050295 ~ 25061664 (+)
mtf mtf coding downstream 115028 25066997 ~ 25083433 (+)
LOC110489411 LOC106570275 coding downstream 135398 25087367 ~ 25110258 (+)
LOC110488164 LOC106570276 coding downstream 163326 25115295 ~ 25133431 (+)
LOC110488166 LOC106570277 coding downstream 183876 25135845 ~ 25145239 (+)
G2309779 NA non-coding upstream 19213 24921035 ~ 24924214 (+)
G2309741 NA non-coding upstream 159921 24782673 ~ 24783506 (+)
G2309703 NA non-coding upstream 202949 24740250 ~ 24740478 (+)
G2309701 NA non-coding upstream 204724 24738438 ~ 24738703 (+)
G2309700 NA non-coding upstream 205538 24737640 ~ 24737889 (+)
G2309805 NA non-coding downstream 38432 24990401 ~ 24999060 (+)
G2309886 NA non-coding downstream 202165 25154134 ~ 25154344 (+)
G2309895 NA non-coding downstream 218255 25170224 ~ 25170474 (+)
G2309897 NA non-coding downstream 232358 25184327 ~ 25184575 (+)
G2309900 NA non-coding downstream 237147 25189116 ~ 25189319 (+)
LOC110488133 NA other upstream 962648 23979350 ~ 23981983 (+)
G2308224 NA other upstream 2338706 22604320 ~ 22604721 (+)
c32h5orf49 cssa14h5orf49 other upstream 2527135 22405971 ~ 22416346 (+)
G2306825 NA other upstream 3355993 21587088 ~ 21587434 (+)
G2311528 NA other downstream 783225 25735194 ~ 25736847 (+)
G2311978 NA other downstream 967183 25919152 ~ 25919800 (+)
G2312300 NA other downstream 1373183 26325152 ~ 26325383 (+)
G2312752 NA other downstream 1781335 26733304 ~ 26733645 (+)
LOC110488193 LOC106570239 other downstream 1864715 26816398 ~ 26820899 (+)

Expression


Co-expression Network