LOC110488162 (LOC106570281)


Basic Information

Item Value
gene id LOC110488162
gene name LOC106570281
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 25050295 ~ 25061664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560251.2
aatatgcaGCACCCAAACATGCGGCTatgcatacaagcatacaagcatattgaaaatattcattttcacagtGAAAAGGTTTCAAATACATtactcacaaaaaaaaacaggagaAGAAAACGGACAATCTCTTCCATACTCAGAAATTCACCGAGCGTGGCGGAACCAAAGTTATGGGAACGATGTCTCCTCACGCGGTGTATAAACCATGAAACTACTTCCTCTCTATCGCAACATGCGCCATTGAAAATCAACGTAGGCCAAGTTTTATGGCATTCATTGTTCAAGTCCGTCTTATTTCTGTAATTTGTGGTTAAGGAAATAACAATGGAGACGATTTTAGAACAACAACGTCGCTACCATGAGGAGAAGGAAAGGCTGTTGGAtgccaaaacaaaggaaatgatGCATAAGAAAACCACGTTACGCGAACAAATAAACTCAGACCATCGAACAAGAGCAATGTTGGATAGATACATGGACGTGAGTTCAACTGTCAGGGAAGCATATGAAGACAAAGATGGTATGAGGAAGGATGAACTGAATGCCATATCAGGACCAAATGAGTTTGCAGAGTTCTACAACAGACTTAAACAGATCAAGGAGTTCCACAGGAAGCATCCTAATGAGATATGTGTGCCGATGTCCATGGAGTTTGACGAGCTGGTCAAGGCTAGAGAGAACCCAACTGAAGAAACACAGAACATGGTGGAATTCAGTGATGAGGAGGCCTACGGACGCTACCTGGATCTCCATGACTGCTATCGGAAGTTTGTCAACCTAAAAGGGGCCGAGAAACTGGAGTACATCAGCTACCTGTCCTCATTTGACCAGTTGTTTGATATCTCCAAAGACAGAAAGAACGCTGAATACAAAAAGTACTTAGAGATGCTACTGGAGTACCTTCAGGACTATACAGAGAGAGTCAAACCTCTGCTTGACCAGAATGATCTCTACGGCAAGATCCTGGGAGAGTTTGAGAAGAAGTGGGAGATGGGGACCTTCCCTGGCTGGCCAAAAGAGACGAGCAGTGCTCTGACCCATGCAGGAGCCCACCTGGACCTTTCTGCTTTCTCCTCTTGGGAGGAGTTGGCTTCCCTTGGTCTGGACAGGTTGAAGTCTGCCCTTATGGCCCTGGGCCTGAAATGTGGAGGAACCCTGGAGGAGAGAGCCCAGAGGCTGTTTAGCACCAAAGGCAAATCTCTGGAATCTCTGGATCCCTCCCTATTCGCCAAAAACCCCAAGTCCAAAGGACCCAAGAAAGACACGGAGCGTAACAAAGAAATCGCCTTCCTGGAGTCTCAGATTTATGAGTATGTGGAAATCCTGGGGGAGCAGAGGCAGCTGACCCATGAGAACGTGCAGAGGAAGCAGGCccggacaggagaggagagagaggatgaagaagaggagcagctcagtgagagtgagagtgaagaTGAGGACAACGAGATCATCTACAACCCCAAGAACCTGCCTCTCGGCTGGGATGGAAAGCCCATTCCATACTGGCTGTATAAACTCCATGGGCTGAACATCAACTATAACTGTGAGATCTGTGGAAACTACACATACAGGGGACCCAAGGCCTTCCAGAGGCACTTTGCAGAGTGGCGTCACGCCCATGGCATGCGCTGCCTGGGAATCCCCAACACTGCTCACTTTGCCAACGTCACCCAGATCGAGGACGCTGTCTCTCTGTGGTCAAAGCTGAAGTCCCAGAAGTCATCAGAGCGTTGGCAACCGGATACAGAGGAGGAGTACGAGGACTCCAGTGGAAACGTGGTCAACAAGAAGACCTACGAGGATCTGAAGAGACAGGGTCTGCTGTAGAGCGTTGAGACGCGTAACGTGATGCCCACAGAAAAATGTCTTTATTTGACCACCTAATCTGTTGTACCTTAAACTGTAACTTGTAATGTTGTTTTTAGTAATTCCTCCCTTTGACAACCTTTTTGAAATGAAACAGCCATTGATTTTAATAATAAATTTGAGTACCATTTGTCA

Function

NR:

description
PREDICTED: splicing factor 3A subunit 3-like

GO:

id name namespace
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12827 SF3A3, SAP61, PRP9; splicing factor 3A subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560251.2 True 2007 mRNA 0.47 15 25050295 25061664

Neighbor

gene id symbol gene type direction distance location
LOC110488160 LOC106588667 coding upstream 98326 24943427 ~ 24951969 (+)
LOC110488157 LOC106588669 coding upstream 134995 24797318 ~ 24915300 (+)
LOC110488151 LOC106570304 coding upstream 583052 24420174 ~ 24467243 (+)
ngly1 ngly1 coding upstream 630294 24409861 ~ 24420001 (+)
LOC110488145 LOC106570298 coding upstream 834999 24203770 ~ 24215296 (+)
mtf mtf coding downstream 5333 25066997 ~ 25083433 (+)
LOC110489411 LOC106570275 coding downstream 25703 25087367 ~ 25110258 (+)
LOC110488164 LOC106570276 coding downstream 53631 25115295 ~ 25133431 (+)
LOC110488166 LOC106570277 coding downstream 74181 25135845 ~ 25145239 (+)
LOC110488167 foxo6 coding downstream 94022 25155686 ~ 25216037 (+)
G2309805 NA non-coding upstream 51235 24990401 ~ 24999060 (+)
G2309779 NA non-coding upstream 126081 24921035 ~ 24924214 (+)
G2309741 NA non-coding upstream 266789 24782673 ~ 24783506 (+)
G2309703 NA non-coding upstream 309817 24740250 ~ 24740478 (+)
G2309701 NA non-coding upstream 311592 24738438 ~ 24738703 (+)
G2309886 NA non-coding downstream 92470 25154134 ~ 25154344 (+)
G2309895 NA non-coding downstream 108560 25170224 ~ 25170474 (+)
G2309897 NA non-coding downstream 122663 25184327 ~ 25184575 (+)
G2309900 NA non-coding downstream 127452 25189116 ~ 25189319 (+)
G2309913 NA non-coding downstream 147157 25208821 ~ 25209125 (+)
LOC110488142 LOC106570295 other upstream 892859 24151527 ~ 24157473 (+)
LOC110488133 NA other upstream 1069516 23979350 ~ 23981983 (+)
G2308224 NA other upstream 2445574 22604320 ~ 22604721 (+)
c32h5orf49 cssa14h5orf49 other upstream 2634003 22405971 ~ 22416346 (+)
G2306825 NA other upstream 3462861 21587088 ~ 21587434 (+)
G2311528 NA other downstream 673530 25735194 ~ 25736847 (+)
G2311978 NA other downstream 857488 25919152 ~ 25919800 (+)
G2312300 NA other downstream 1263488 26325152 ~ 26325383 (+)
G2312752 NA other downstream 1671640 26733304 ~ 26733645 (+)
LOC110488193 LOC106570239 other downstream 1755020 26816398 ~ 26820899 (+)

Expression


Co-expression Network