LOC110489411 (LOC106570275)


Basic Information

Item Value
gene id LOC110489411
gene name LOC106570275
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 25087367 ~ 25110258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970890.1
GCCGGCGGGGTGGAGCAGGTCGGCCCAGGCTTCAGGCGAGGTCAGGTAGGAGTCGTAGACATAGAACAGAGGAAGGATCCGCCCTGTAGTCGACCTGAAGCGGTAGAAGGCGCCGTGGTTCCCGTACCTATGAGGCAGATGGATAGCACAGTTGGTTGTGCAGAAGTTGGCAGAAACATCTCGCCCTGGAAACAAGACCTGAAGAGGACTCAGATTTCTCCAGATCCCCAGACCTCCAATGACACTGGACATTAATATGGAAAGCAGAGCTCTGACCTTTGGCTTAAAGGGGCTGTGCAAAGAACGAAGAGGAGGAAGCCACTGGATCGGAGGAGGATCTGGGTTCGTCTCGTGGCAGCGGCGTGTGTAAATGGTTCAACGTCCGGATGGGTTTCGGGTTCCTGTCCATGACCAACATAGATGGGACACCGCTCGAGGAGACTCTCGATGTATTCGTTCATCAGAGCAAGCTGCACATGGAGGGCTTCCGTAGCCTGAAGGAGGGCGAGGCGGTGGAGTTTACCTTCAAGAAGTCGTCTAAAGGCCTAGAGTCTGTCACGGTGACGGGGCCAGGGGGAGCACAGTGTGTGGGCAGTGAGAAGAGGCCTAAGGGGCAACAGAAACGACGCTCCAAGGGGGACAGATGCTACAACTGTGGAGGACCTGACCACCATGCCAAAGAATGCCAGCTACCTCCTCAGCCCAAGAAGTGCCATTTTTGCCAGAGCATCAGTCACATGGTGGCCAACTGTCCAATCAAAGCACAGCAGTCCTCCCCTGGCGTTCAGGGAACAGCATTGTCACTGAGGGACGAGGAAGAGGAGCAGAGCCATGCCCCCTTTCCCCCCAGGGAGAGCTATGATTGATCGATTCAGGGATTCAGCCAATCAAAAGGTTTCATTGGAGTGCTGCTTTTGGAACTACATCAGGTTGTCTTTATTTATCGCACAAACAGCAAGAAATGTGTACTTTTATTGATGTGATAGTTGAGATTGAGAGTTAGCTCAGTGTTTTAATTGTATTTTCCCTGCTGCAGCTAAATAAGAGGTAGCCTATGTGGATTTTCCTGGAGATGATTGAGTGCTCTGCTCTCTCACTGTATACCATGTTCTCCCAAAAAGCTTTTGTTAGAAAAAGGTAAAGGAAATACAATCATACAAGTGAATGTACAGATATAGGTGTCCTGACTCTAAGACTGTTTCATGGACAAAAAGGAGTGTGTCTTTCTGCTTATTGAAATCTTCAGGTATTATAAGTCGTTGTGCATTTCTACGGCCAAGTGAATGTTTTAACCCTTTCTGCTGTATGAATGTTGGTACACCATGGTTGCCGATTGGACTGTGTACAATACAGCTTGTCATAAGTGCCATAGCCTGTTCATTTGTCTCATGGGTGATTGGATGTGGCTCCCTCCCTTACAAAGCCTTGACTCAAGGCTAAATGCGAGACCAGCATTGATTGTatgacagtctgtctgtctgtctgtctgtctgtcccacagtttTTACTATGGATGTAAACATGGCTTTCTAACATATTCTACATATCAGGGGTGTTCTCATACACTGCCCAAATACATgacttgtttctcattgtctcgTTGTACTATTTAGAAAGCCAAAGGTATTACATGTTCTTTCTTGGATGGACCTGAgcattattttttttctttaaggaCATATTTTCATGATTGAGTGCTAGGATAAAGGGACTCAAGTGTTGAATAAGATGGTTATAGGTTTAATATTTACTCCTCTTTTACAGGAGTGGATAGAATATTTTACACCACTTAAATGTATATAGATATGATcttttttatatttattatttattcatCGTCACTCTCTACCTTTCTTTCTAATAGATAA
>XM_036970891.1
TGAATATGTTTGGCCTGACAATGACCATTGGAGTTGGCAAGACGGCGCAAAGAGATGTGGGACCTGCAGGCTACTGCTGTTCTGTTCCATAGCCAAACTCTTTTCATACATTTTTCCACAGACCTGAAGAGGACTCAGATTTCTCCAGATCCCCAGACCTCCAATGACACTGGACATTAATATGGAAAGCAGAGCTCTGACCTTTGGCTTAAAGGGGCTGTGCAAAGAACGAAGAGGAGGAAGCCACTGGATCGGAGGAGGATCTGGGTTCGTCTCGTGGCAGCGGCGTGTGTAAATGGTTCAACGTCCGGATGGGTTTCGGGTTCCTGTCCATGACCAACATAGATGGGACACCGCTCGAGGAGACTCTCGATGTATTCGTTCATCAGAGCAAGCTGCACATGGAGGGCTTCCGTAGCCTGAAGGAGGGCGAGGCGGTGGAGTTTACCTTCAAGAAGTCGTCTAAAGGCCTAGAGTCTGTCACGGTGACGGGGCCAGGGGGAGCACAGTGTGTGGGCAGTGAGAAGAGGCCTAAGGGGCAACAGAAACGACGCTCCAAGGGGGACAGATGCTACAACTGTGGAGGACCTGACCACCATGCCAAAGAATGCCAGCTACCTCCTCAGCCCAAGAAGTGCCATTTTTGCCAGAGCATCAGTCACATGGTGGCCAACTGTCCAATCAAAGCACAGCAGTCCTCCCCTGGCGTTCAGGGAACAGCATTGTCACTGAGGGACGAGGAAGAGGAGCAGAGCCATGCCCCCTTTCCCCCCAGGGAGAGCTATGATTGATCGATTCAGGGATTCAGCCAATCAAAAGGTTTCATTGGAGTGCTGCTTTTGGAACTACATCAGGTTGTCTTTATTTATCGCACAAACAGCAAGAAATGTGTACTTTTATTGATGTGATAGTTGAGATTGAGAGTTAGCTCAGTGTTTTAATTGTATTTTCCCTGCTGCAGCTAAATAAGAGGTAGCCTATGTGGATTTTCCTGGAGATGATTGAGTGCTCTGCTCTCTCACTGTATACCATGTTCTCCCAAAAAGCTTTTGTTAGAAAAAGGTAAAGGAAATACAATCATACAAGTGAATGTACAGATATAGGTGTCCTGACTCTAAGACTGTTTCATGGACAAAAAGGAGTGTGTCTTTCTGCTTATTGAAATCTTCAGGTATTATAAGTCGTTGTGCATTTCTACGGCCAAGTGAATGTTTTAACCCTTTCTGCTGTATGAATGTTGGTACACCATGGTTGCCGATTGGACTGTGTACAATACAGCTTGTCATAAGTGCCATAGCCTGTTCATTTGTCTCATGGGTGATTGGATGTGGCTCCCTCCCTTACAAAGCCTTGACTCAAGGCTAAATGCGAGACCAGCATTGATTGTatgacagtctgtctgtctgtctgtctgtctgtcccacagtttTTACTATGGATGTAAACATGGCTTTCTAACATATTCTACATATCAGGGGTGTTCTCATACACTGCCCAAATACATgacttgtttctcattgtctcgTTGTACTATTTAGAAAGCCAAAGGTATTACATGTTCTTTCTTGGATGGACCTGAgcattattttttttctttaaggaCATATTTTCATGATTGAGTGCTAGGATAAAGGGACTCAAGTGTTGAATAAGATGGTTATAGGTTTAATATTTACTCCTCTTTTACAGGAGTGGATAGAATATTTTACACCACTTAAATGTATATAGATATGATcttttttatatttattatttattcatCGTCACTCTCTACCTTTCTTTCTAATAGATAA
>XM_021562124.2
AGGTGGGGGTTGATATTAGAGGTATAGGAGAGTCAGAGGGGGCTCGCTCTCCATATTGTACAAGAGACCAGGAGaaagaaaatacaatatttttcaaAGAGGGATTACTGAAAAACGGGCTTGTTGACGATACAACCAGCGTTTATTGTCTGATTCTTCTGGAGTTGTAGGAGACCCAGGAACCCCCCAAACCATGGCAGAAGGGGGCTGTGCAAAGAACGAAGAGGAGGAAGCCACTGGATCGGAGGAGGATCTGGGTTCGTCTCGTGGCAGCGGCGTGTGTAAATGGTTCAACGTCCGGATGGGTTTCGGGTTCCTGTCCATGACCAACATAGATGGGACACCGCTCGAGGAGACTCTCGATGTATTCGTTCATCAGAGCAAGCTGCACATGGAGGGCTTCCGTAGCCTGAAGGAGGGCGAGGCGGTGGAGTTTACCTTCAAGAAGTCGTCTAAAGGCCTAGAGTCTGTCACGGTGACGGGGCCAGGGGGAGCACAGTGTGTGGGCAGTGAGAAGAGGCCTAAGGGGCAACAGAAACGACGCTCCAAGGGGGACAGATGCTACAACTGTGGAGGACCTGACCACCATGCCAAAGAATGCCAGCTACCTCCTCAGCCCAAGAAGTGCCATTTTTGCCAGAGCATCAGTCACATGGTGGCCAACTGTCCAATCAAAGCACAGCAGTCCTCCCCTGGCGTTCAGGGAACAGCATTGTCACTGAGGGACGAGGAAGAGGAGCAGAGCCATGCCCCCTTTCCCCCCAGGGAGAGCTATGATTGATCGATTCAGGGATTCAGCCAATCAAAAGGTTTCATTGGAGTGCTGCTTTTGGAACTACATCAGGTTGTCTTTATTTATCGCACAAACAGCAAGAAATGTGTACTTTTATTGATGTGATAGTTGAGATTGAGAGTTAGCTCAGTGTTTTAATTGTATTTTCCCTGCTGCAGCTAAATAAGAGGTAGCCTATGTGGATTTTCCTGGAGATGATTGAGTGCTCTGCTCTCTCACTGTATACCATGTTCTCCCAAAAAGCTTTTGTTAGAAAAAGGTAAAGGAAATACAATCATACAAGTGAATGTACAGATATAGGTGTCCTGACTCTAAGACTGTTTCATGGACAAAAAGGAGTGTGTCTTTCTGCTTATTGAAATCTTCAGGTATTATAAGTCGTTGTGCATTTCTACGGCCAAGTGAATGTTTTAACCCTTTCTGCTGTATGAATGTTGGTACACCATGGTTGCCGATTGGACTGTGTACAATACAGCTTGTCATAAGTGCCATAGCCTGTTCATTTGTCTCATGGGTGATTGGATGTGGCTCCCTCCCTTACAAAGCCTTGACTCAAGGCTAAATGCGAGACCAGCATTGATTGTatgacagtctgtctgtctgtctgtctgtctgtcccacagtttTTACTATGGATGTAAACATGGCTTTCTAACATATTCTACATATCAGGGGTGTTCTCATACACTGCCCAAATACATgacttgtttctcattgtctcgTTGTACTATTTAGAAAGCCAAAGGTATTACATGTTCTTTCTTGGATGGACCTGAgcattattttttttctttaaggaCATATTTTCATGATTGAGTGCTAGGATAAAGGGACTCAAGTGTTGAATAAGATGGTTATAGGTTTAATATTTACTCCTCTTTTACAGGAGTGGATAGAATATTTTACACCACTTAAATGTATATAGATATGATcttttttatatttattatttattcatCGTCACTCTCTACCTTTCTTTCTAATAGATAA
>XM_036970888.1
ATGAgaagagacaaaaaaaaaaagagggtGGGTTGGGTTTCATTGCATTGTCTTTCAGATTTGGGGATTCTTTTGAGAAATGCTTCCCAGCAGTCTTACACCACTGGTTGTCAGGGCGAAAGTATCTCCAACCCTCTTTGATTGTCTCCACTGCTGACCCGTTCCTCTTCTGCGTCTTTGTTATTGAACCGTTTGCGGGAAAGTGTTGTGTAGAGTGGAGAAGGGTTGGAGGTGGACAGGGCCGGGCAGGGGGATTTGGGAGAGGAGGACACGGTAAACCTGGATTAAAATATACCCGGGAAAGGGATGGGCTCTTATTTCGAACAGCAGTTTACAGGGGGCTGTGCAAAGAACGAAGAGGAGGAAGCCACTGGATCGGAGGAGGATCTGGGTTCGTCTCGTGGCAGCGGCGTGTGTAAATGGTTCAACGTCCGGATGGGTTTCGGGTTCCTGTCCATGACCAACATAGATGGGACACCGCTCGAGGAGACTCTCGATGTATTCGTTCATCAGAGCAAGCTGCACATGGAGGGCTTCCGTAGCCTGAAGGAGGGCGAGGCGGTGGAGTTTACCTTCAAGAAGTCGTCTAAAGGCCTAGAGTCTGTCACGGTGACGGGGCCAGGGGGAGCACAGTGTGTGGGCAGTGAGAAGAGGCCTAAGGGGCAACAGAAACGACGCTCCAAGGGGGACAGATGCTACAACTGTGGAGGACCTGACCACCATGCCAAAGAATGCCAGCTACCTCCTCAGCCCAAGAAGTGCCATTTTTGCCAGAGCATCAGTCACATGGTGGCCAACTGTCCAATCAAAGCACAGCAGTCCTCCCCTGGCGTTCAGGGAACAGCATTGTCACTGAGGGACGAGGAAGAGGAGCAGAGCCATGCCCCCTTTCCCCCCAGGGAGAGCTATGATTGATCGATTCAGGGATTCAGCCAATCAAAAGGTTTCATTGGAGTGCTGCTTTTGGAACTACATCAGGTTGTCTTTATTTATCGCACAAACAGCAAGAAATGTGTACTTTTATTGATGTGATAGTTGAGATTGAGAGTTAGCTCAGTGTTTTAATTGTATTTTCCCTGCTGCAGCTAAATAAGAGGTAGCCTATGTGGATTTTCCTGGAGATGATTGAGTGCTCTGCTCTCTCACTGTATACCATGTTCTCCCAAAAAGCTTTTGTTAGAAAAAGGTAAAGGAAATACAATCATACAAGTGAATGTACAGATATAGGTGTCCTGACTCTAAGACTGTTTCATGGACAAAAAGGAGTGTGTCTTTCTGCTTATTGAAATCTTCAGGTATTATAAGTCGTTGTGCATTTCTACGGCCAAGTGAATGTTTTAACCCTTTCTGCTGTATGAATGTTGGTACACCATGGTTGCCGATTGGACTGTGTACAATACAGCTTGTCATAAGTGCCATAGCCTGTTCATTTGTCTCATGGGTGATTGGATGTGGCTCCCTCCCTTACAAAGCCTTGACTCAAGGCTAAATGCGAGACCAGCATTGATTGTatgacagtctgtctgtctgtctgtctgtctgtcccacagtttTTACTATGGATGTAAACATGGCTTTCTAACATATTCTACATATCAGGGGTGTTCTCATACACTGCCCAAATACATgacttgtttctcattgtctcgTTGTACTATTTAGAAAGCCAAAGGTATTACATGTTCTTTCTTGGATGGACCTGAgcattattttttttctttaaggaCATATTTTCATGATTGAGTGCTAGGATAAAGGGACTCAAGTGTTGAATAAGATGGTTATAGGTTTAATATTTACTCCTCTTTTACAGGAGTGGATAGAATATTTTACACCACTTAAATGTATATAGATATGATcttttttatatttattatttattcatCGTCACTCTCTACCTTTCTTTCTAATAGATAA
>XM_036970889.1
TTCTCCGAAACACTTTTGCCTGAGAATGTTGTTGTGATTATTTGTTCTTCGATTTGGAACCTACTATCTCTTTTCACGGAAGAATGGTTTTCAGTGCTTGCGGTGAAGTTTTGGGATAAAGTATGACTATAGGGGGCTGTGCAAAGAACGAAGAGGAGGAAGCCACTGGATCGGAGGAGGATCTGGGTTCGTCTCGTGGCAGCGGCGTGTGTAAATGGTTCAACGTCCGGATGGGTTTCGGGTTCCTGTCCATGACCAACATAGATGGGACACCGCTCGAGGAGACTCTCGATGTATTCGTTCATCAGAGCAAGCTGCACATGGAGGGCTTCCGTAGCCTGAAGGAGGGCGAGGCGGTGGAGTTTACCTTCAAGAAGTCGTCTAAAGGCCTAGAGTCTGTCACGGTGACGGGGCCAGGGGGAGCACAGTGTGTGGGCAGTGAGAAGAGGCCTAAGGGGCAACAGAAACGACGCTCCAAGGGGGACAGATGCTACAACTGTGGAGGACCTGACCACCATGCCAAAGAATGCCAGCTACCTCCTCAGCCCAAGAAGTGCCATTTTTGCCAGAGCATCAGTCACATGGTGGCCAACTGTCCAATCAAAGCACAGCAGTCCTCCCCTGGCGTTCAGGGAACAGCATTGTCACTGAGGGACGAGGAAGAGGAGCAGAGCCATGCCCCCTTTCCCCCCAGGGAGAGCTATGATTGATCGATTCAGGGATTCAGCCAATCAAAAGGTTTCATTGGAGTGCTGCTTTTGGAACTACATCAGGTTGTCTTTATTTATCGCACAAACAGCAAGAAATGTGTACTTTTATTGATGTGATAGTTGAGATTGAGAGTTAGCTCAGTGTTTTAATTGTATTTTCCCTGCTGCAGCTAAATAAGAGGTAGCCTATGTGGATTTTCCTGGAGATGATTGAGTGCTCTGCTCTCTCACTGTATACCATGTTCTCCCAAAAAGCTTTTGTTAGAAAAAGGTAAAGGAAATACAATCATACAAGTGAATGTACAGATATAGGTGTCCTGACTCTAAGACTGTTTCATGGACAAAAAGGAGTGTGTCTTTCTGCTTATTGAAATCTTCAGGTATTATAAGTCGTTGTGCATTTCTACGGCCAAGTGAATGTTTTAACCCTTTCTGCTGTATGAATGTTGGTACACCATGGTTGCCGATTGGACTGTGTACAATACAGCTTGTCATAAGTGCCATAGCCTGTTCATTTGTCTCATGGGTGATTGGATGTGGCTCCCTCCCTTACAAAGCCTTGACTCAAGGCTAAATGCGAGACCAGCATTGATTGTatgacagtctgtctgtctgtctgtctgtctgtcccacagtttTTACTATGGATGTAAACATGGCTTTCTAACATATTCTACATATCAGGGGTGTTCTCATACACTGCCCAAATACATgacttgtttctcattgtctcgTTGTACTATTTAGAAAGCCAAAGGTATTACATGTTCTTTCTTGGATGGACCTGAgcattattttttttctttaaggaCATATTTTCATGATTGAGTGCTAGGATAAAGGGACTCAAGTGTTGAATAAGATGGTTATAGGTTTAATATTTACTCCTCTTTTACAGGAGTGGATAGAATATTTTACACCACTTAAATGTATATAGATATGATcttttttatatttattatttattcatCGTCACTCTCTACCTTTCTTTCTAATAGATAA

Function

NR:

description
protein lin-28 homolog A-like

GO: NA

KEGG:

id description
K18754 LIN28; protein lin-28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970890.1 False 1868 mRNA 0.46 6 25087367 25110258
XM_036970891.1 False 1793 mRNA 0.44 5 25090769 25110258
XM_021562124.2 False 1783 mRNA 0.44 4 25101216 25110258
XM_036970888.1 False 1917 mRNA 0.45 4 25101494 25110258
XM_036970889.1 True 1712 mRNA 0.44 4 25101864 25110258

Neighbor

gene id symbol gene type direction distance location
mtf mtf coding upstream 3934 25066997 ~ 25083433 (+)
LOC110488162 LOC106570281 coding upstream 25703 25050295 ~ 25061664 (+)
LOC110488160 LOC106588667 coding upstream 135398 24943427 ~ 24951969 (+)
LOC110488157 LOC106588669 coding upstream 172067 24797318 ~ 24915300 (+)
LOC110488151 LOC106570304 coding upstream 620124 24420174 ~ 24467243 (+)
LOC110488164 LOC106570276 coding downstream 5037 25115295 ~ 25133431 (+)
LOC110488166 LOC106570277 coding downstream 25587 25135845 ~ 25145239 (+)
LOC110488167 foxo6 coding downstream 45428 25155686 ~ 25216037 (+)
LOC118946545 slfnl1 coding downstream 226760 25337018 ~ 25352457 (+)
LOC110488169 ctps1 coding downstream 327300 25437558 ~ 25452596 (+)
G2309805 NA non-coding upstream 88307 24990401 ~ 24999060 (+)
G2309779 NA non-coding upstream 163153 24921035 ~ 24924214 (+)
G2309741 NA non-coding upstream 303861 24782673 ~ 24783506 (+)
G2309703 NA non-coding upstream 346889 24740250 ~ 24740478 (+)
G2309701 NA non-coding upstream 348664 24738438 ~ 24738703 (+)
G2309886 NA non-coding downstream 43876 25154134 ~ 25154344 (+)
G2309895 NA non-coding downstream 59966 25170224 ~ 25170474 (+)
G2309897 NA non-coding downstream 74069 25184327 ~ 25184575 (+)
G2309900 NA non-coding downstream 78858 25189116 ~ 25189319 (+)
G2309913 NA non-coding downstream 98563 25208821 ~ 25209125 (+)
LOC110488142 LOC106570295 other upstream 929931 24151527 ~ 24157473 (+)
LOC110488133 NA other upstream 1106588 23979350 ~ 23981983 (+)
G2308224 NA other upstream 2482646 22604320 ~ 22604721 (+)
c32h5orf49 cssa14h5orf49 other upstream 2671075 22405971 ~ 22416346 (+)
G2306825 NA other upstream 3499933 21587088 ~ 21587434 (+)
G2311528 NA other downstream 624936 25735194 ~ 25736847 (+)
G2311978 NA other downstream 808894 25919152 ~ 25919800 (+)
G2312300 NA other downstream 1214894 26325152 ~ 26325383 (+)
G2312752 NA other downstream 1623046 26733304 ~ 26733645 (+)
LOC110488193 LOC106570239 other downstream 1706426 26816398 ~ 26820899 (+)

Expression


Co-expression Network