LOC110488167 (foxo6)


Basic Information

Item Value
gene id LOC110488167
gene name foxo6
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 25155686 ~ 25216037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560256.2
CTTCTTCAACGCTACAATTTAGTCGCTTGATGCTCAAACCTCAATGACTGATACACACCGATGTACCAATGTGGAAGGAATAGGATATGGTAATAATCTAAAAATCTTACGAAATAAGGGAGGTTATTAAAGACATGTAATGCATTTATGACAGGGCGTCTTCGTGGCGTGAGAGAAGGAAGTCACAAACAGAGCATGCTCCACGAGCCGCCTGCGAGGCTTTTTTCGTCTGGAATTCTGCGGGTTTATAAATGATTCATAGAGTGAGCCTATTTTTAAGCGGTGTAATTGCGCGCAGTTCGCACAGTCAGCCAGTTTGTTACTATCAGCTATGAGTGCGTGTTCTGTTTTCGCGTGAGCGCTTGCGTGTGAGTGAAAGCCGGTCTCCAATCTGCagaggagacggagaggagaTTCCAGACGACAGAAACAGTGAGCGTGTGGAAACTTCGTGAGAGACAGTCAAATTTTATTGGCTTTAATCCTGGGGTTTGATCGAATATATCGTCAAAGCCTGCCAGCCAGTATAGCCGTTGGACAAGGGAATCAACTGTTGCTGCAGCAGACCGTTTTCAAAGGGACATTAGGCTAGTCACAATTCATCAAGTCTGTGTTGCTGAATCTATACATGAGTTTGAGAATGGATTTTTAACCATCACCTGGACCTAGTTTATTTATTGTGCTGCGCGTTGGATGCATGTTGTTTATGGTCTGTTCTGATACTGCATAGAGAATACATGCTCTTCCAGAATGATCCCACTCCACGCCTCTCCTGGCTTTTTGATATTGTTTTATCAGATTTTTGTATCAGACAGTAGCAGTTGCTTGTAGGCAAGAAGGCACATTTGGGCTATTTGAACCATTCCAAAGGCATTTGGAGGATTATAGTGGATTGTTTCTTTCTCTGTGACCTTGCCTCTCCGGCGTTAATCCAGACGGATAGATGCTGATGATGGAGAAGAACGGCATGGACGCGCATCAGGTTGGAATCAATCATGAATACGAGCTGGAGGGCCGGCCTCGGTCATGCTGGCCGCTGCCGCCGTGTCCTGAGGATTTCCCACGGGGAGTGGATGAAGCAAATCGAGGTCTGCCCCTGGCATCTATCAAACTGGAGCAGCTTCAGTACAACGTGCCGACATGCCGCGGCGGAGCAGCCGAGGGAAGAGGTGGCGCACCCGTAGAGCTCAAACATCCATCCGGCGCCCCGGTCCCTATCGCACCCGGCGCTCCTACATGCATGTCGGGGGCTTCCCTCGACGTGGCTGGCCAACTGCGCAAAGCCAAGTCGTCCCGGAGGAACGCGTGGGGAAACCAGTCGTACGCGGACCTCATCACGCGTGCCATTGAGAGTGTCCCGGAGAAGAGACTCACTCTGTCGCAGGTTTACGATTGGATGGTGCGATTTGTCCCTTATTTCAAGGATAAAGGCGACAGCAATAGTTCAGCTGGATGGAAGAACTCCATCCGCCACAACCTGTCCCTCCACACTCGGTTTGTCCGTGTCCAGAATGAGGGGACAGGGAAGAGTTCCTGGTGGATGCTGAACCCAGAGGGAGGGAAGATGGGGAAGGGACCCCGACGACGCGCCGCCACAATCGACTGCCCCAACGGCACCAAGTACCTGAAGAGTAAAGGACGGGCCAGGGGTAAGAGGCCTGGAGCCGGAGCTGGCAGTGGAGCTGTTGGTCGGGGCAGGCGGCAGGGTTACGGCCTGGGTCACGGGGCTCGACCGGGGATGCATCAGGGGTCTCCGGAGCATGGTAGTCCTGCAGGGAAGGGGGGAgcaggggtgggaggagaggagtacGATGCCTGGACGGATCTCCACTCCCGGACCTCCTCTTCTGCTTCGACACTTAGTGGCTGCCTTTCTCCCATCCTGGCCGAGGCTGAGCCAGATGAACCAGAGGAAGGAGGCCTTTCTTGCTCCACCTCCCCCCGCCTCTATCCTAGCCCTACCGCAACTCGCTCCCCTGCCCTGGGCACTGGGGGGCACTGCCCAGGAACCTCCTTGGAGCTGCCCCAACTCACTGACCTGACTGGGGCTATCAGCCTGGAAGAGGGCTACCCCCACCCCCAGAACCACCGACAAACCCAGCCTCGTAATGGCTACCCCAGCCCCTACGGCACCGGCCCCAAGGGGGAAGGCTCCTACTGCGGCCCCGTCTACGGGCAGCCGCCTCTGGGCATGCTGCAGCTCCATGCCCCCATGCCCATGCAGACCATTCAGGAGAACAAGCGAGCCAGCTTCCAGCGCCCCCTGAGGGCCTACTCAGAGAACAATGCCCTGCAGAGCCTGCTGACCGGAGGGCCTGGAGGTCCTCAGTACTGCAGTAAGGACATGGTCACACTGGGAGGGCAAGGAGGGGAGTCACACACGCTGCTGACCCAGGTAACCAACGGGGTTCACAGCCACAATCAGAGTCGCAGCAGCCATAATCATAGCCATAGCAACCATAATCATAATAACCACGAGCATGGACACAATTCAGGCCCACACAATGGTCATGGCTCAGTTCATGACCAGAACCCCAGCGGTCATCTTCAgaatggcctccacaatcatggACAACCCAACCTGGACTATAACCATAGCCACAAACAACACCTCAGCCCGGCCACTGACTACAACCAGAGTCACAACCACAAACTGAACACAAGCCATGACCACACTCACCAGTCCAACCAGGGTCACCTCCACGGTCACCTCCAGGGTGGACCCAGACCTCCAGCCCTCCAGGCTCTTTCTCCCAGAGTCAACACAGACATCCTGCAGCCCTACAGCCTCAAAACCCCCACCCCAACTCCTAGCCACTATGGCCCCCTCGCCCCCCACCTCCCCACCCCCAACCCCTCGTCCATTCCCCCCAACCCTGCCTCTGTTCTCGACATACCCCAGGACCCCTGCCTCCGCCTGGCCTCCGCCCCGGCACCTCACCCCCACCCTCGCCACCAGCCCTACCCCGGTACCACCTACCACCAGGGTATAACTATGACTGACTCCTGGCATGGCTACTACCACCACACCCTCCACCCCACCCAGAACTACCAGGGCCACCCCCACCACAGCACTCACCACCCCAGCCGCATGGCTCCAGACCTGGATGTAAACGTAGACATTCTCCCCAGCAGCCTAGACTGTGACGTGGAGTCCATCCACCTCCATGACTTCATGGACACAGAGGGGATGGGGATGGACTTCAACTTTGACGGCTCCCTGTCTCAAGGAGTGGGCATGGGCATGAGCATAGCCGCTTTCGCCGGAGCGCCGCAGGGACATCACAGCCAGAACTGGGTGCCTGGGTGAAGGTGATTGGTCAGGGAAGCCCAAGGACCAATCAGGACACAGCAGAAAGGCTTTTACCCACAAGGCCGAGCtgcagaggtcagaggttagggatCAGGGTCGGAGCGTACCCttggactgactgattgactgtgaTGCTTAATGCTCCAAGACAAAATAACTGAATGTGTCTTGTCATGTTGTTTCCTGAGGGTCCCTTTAACTGTACAATCTGtgttctctcattctttctcttcctctctctttgttcattctatccctttctctccccctctctgtgttctctttctcattccttcTACACTCTAGTGGTGCCACAGCACCCTCCCAGCTCTGTGCTATCCCCCTGGTTCATGTCCTTCAGTTTGTCTGCTCTACTTTATCAATCATTTCTTGGCCATCCATAAGCTCTCAAGCACTTTACATCCGTTGCTTTCAAAACAGATGCAGTATAACAAAGACCAGGGGAAAGTCAGTCTCTGTTGGCTTAAGTTGAATTTATGCAAACCCCTTTATTATCCATCTCTTCTTATAAAAACGAGAGAGGCGGTATCTTACTTGAGAACAGGATCAAACAACTGCATAAATAAATGGGTTCAGCAGGTTGAGATGCGGGTGCTTTTCAGAATGTTTTGCATACTGGTTGGAAAGTAGGGAGGTCgggtggatggaaggagggatggatgcAGGGTAGGAAGAGGAGGTTGGCTGCACCAGGGTCAGTGCAAATTCTCCTTCCTcaatgatggagggatgaaaagaggcagggatagagggatggagggatggattgaGGTCAGGAGTTCTCCATCTCCCTGGTGGTGTCACCCACAATAGATAGATGGAGGAAAAGAGGATAGATTGAGGATAAGGTTGGTTGGTTGTTGTGTGCCCCAGTGTGGTCCAGGAGGACAGCCATCCATCAGACAGCCTTCATCACCAACTAGTTAAGTGAACGATCTCCTCTTTAATCTGTTGGAGTAATGTGATGGTGATGCATCACTATTGCAAATTTAATGTGTTGCTCCCCCCTCCCATTCACCTCCATCcggacacacgcacacgcacacgcacacgcacacgcacacacacacacacacacacacactctctctctctctctctctctctctctctctctctctctctcaccattcaCCATTCACCTCCGGACAGACTTTGTCAAGGCTTAATGTGTTTTGGCCAAAGTGATGATTAAGGTCACTGTGCGCTAAATagcggaggagggagagatggagggatgagggaggaaaGAATTAATGCTAATATTCCCTCTGTGCCTCTTCCTCTCCATTTGGTGGATTTATGTAGCTTTCCCCATAATGAAATAAGGAGTGATCAGGTCCTATCCTCCCTGtatcccttcctccctgcctcccatcctccctgcctccctgcttcccatcctccctttctcccatcctccctgcctcccatcctcccatcctctctgcctccctg
>TU2642258
AGGAGGGGAGTCACACACGCTGCTGACCCAGGTAACCAACGGGGTTCACAGCCACAATCAGAGTCGCAGCAGCCATAATCATAGCCATAGCAACCATAATCATAATAACCACGAGCATGGACACAATTCAGGCCCACACAATGGTCATGGCTCAGTTCATGACCAGAACCCCAGCGGTCATCTTCAgaatggcctccacaatcatggACAACCCAACCTGGACTATAACCATAGCCACAAACAACACCTCAGCCCGGCCACTGACTACAACCAGAGTCACAACCACAAACTGAACACAAGCCATGACCACACTCACCAGTCCAACCAGGGTCACCTCCACGGTCACCTCCAGGGTGGACCCAGACCTCCAGCCCTCCAGGCTCTTTCTCCCAGAGTCAACACAGACATCCTGCAGCCCTACAGCCTCAAAACCCCCACC

Function

symbol description
foxo6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of dendritic spine development and regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
forkhead box protein O6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560256.2 False 4792 mRNA 0.54 2 25155686 25216037
TU2642258 True 439 lncRNA 0.54 1 25213610 25214048

Neighbor

gene id symbol gene type direction distance location
LOC110488166 LOC106570277 coding upstream 10447 25135845 ~ 25145239 (+)
LOC110488164 LOC106570276 coding upstream 22255 25115295 ~ 25133431 (+)
LOC110489411 LOC106570275 coding upstream 45428 25087367 ~ 25110258 (+)
mtf mtf coding upstream 72253 25066997 ~ 25083433 (+)
LOC110488162 LOC106570281 coding upstream 94022 25050295 ~ 25061664 (+)
LOC118946545 slfnl1 coding downstream 120981 25337018 ~ 25352457 (+)
LOC110488169 ctps1 coding downstream 221521 25437558 ~ 25452596 (+)
LOC110488170 LOC106570265 coding downstream 243670 25459707 ~ 25461881 (+)
LOC118946553 NA coding downstream 256359 25472396 ~ 25472531 (+)
LOC110488172 LOC106570264 coding downstream 256404 25472441 ~ 25479936 (+)
G2309886 NA non-coding upstream 1342 25154134 ~ 25154344 (+)
G2309805 NA non-coding upstream 156626 24990401 ~ 24999060 (+)
G2309779 NA non-coding upstream 231472 24921035 ~ 24924214 (+)
G2309741 NA non-coding upstream 372180 24782673 ~ 24783506 (+)
G2309703 NA non-coding upstream 415208 24740250 ~ 24740478 (+)
G2309888 NA non-coding downstream 456 25216493 ~ 25218324 (+)
G2309887 NA non-coding downstream 2406 25218443 ~ 25219645 (+)
G2309919 NA non-coding downstream 17192 25233229 ~ 25233468 (+)
G2309930 NA non-coding downstream 34062 25250099 ~ 25250298 (+)
G2309932 NA non-coding downstream 36000 25252037 ~ 25252277 (+)
LOC110488142 LOC106570295 other upstream 998250 24151527 ~ 24157473 (+)
LOC110488133 NA other upstream 1174907 23979350 ~ 23981983 (+)
G2308224 NA other upstream 2550965 22604320 ~ 22604721 (+)
c32h5orf49 cssa14h5orf49 other upstream 2739394 22405971 ~ 22416346 (+)
G2306825 NA other upstream 3568252 21587088 ~ 21587434 (+)
G2311528 NA other downstream 519157 25735194 ~ 25736847 (+)
G2311978 NA other downstream 703115 25919152 ~ 25919800 (+)
G2312300 NA other downstream 1109115 26325152 ~ 26325383 (+)
G2312752 NA other downstream 1517267 26733304 ~ 26733645 (+)
LOC110488193 LOC106570239 other downstream 1600647 26816398 ~ 26820899 (+)
G2309914 NA non-coding upstream 2164 25211158 ~ 25211446 (+)
G2309913 NA non-coding upstream 4485 25208821 ~ 25209125 (+)
G2309900 NA non-coding upstream 24291 25189116 ~ 25189319 (+)
G2309897 NA non-coding upstream 29035 25184327 ~ 25184575 (+)
G2309895 NA non-coding upstream 43136 25170224 ~ 25170474 (+)

Expression


Co-expression Network