LOC110488174 (LOC106588632)


Basic Information

Item Value
gene id LOC110488174
gene name LOC106588632
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 25528117 ~ 25529151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560267.2
ATGATGTACCAGGCTTTTCTGCTGACGATCCCTCTACTGATGCTACTTCAGACATCATGCACCACCACTTCAGCACTTGATTCTGTAAAGAAGGTTGGGCAGGCAAGTGCTCCAAAAGTTGTCACAGTTAATGAGTTGAGAAATAGGGCTCAGTTCAATGCCAGAAACTGCAAGGAAGTTAAGGATAAATATGGTCAAACTGAGAACGGCCTGTACTACCTGAACACAGCTACTGGGGGGGTCTACCAGACCTTCTGCGACATGACCACAGCGGGTGGCGGCTGGACTCTGGTGGCAAGCGTGCATGAAGACAACATCTATGGGAAGTGCATGGTGGGCGATCGTTGGACCAGCCAGCAGGGCAACAATGCCAACTGGCCACAAGGAGAAGGCAACTGGGCAAACAGGAAGACTTTCGGAACAGTGGAGGCAGCCACGGACGACGACTTCAAGAATCCTGGCTACTACGACATCGAAGCAGAAGACATGTCGGTGTGGCATGTTCCCAACAACACTCCGGTCAACCACTGGAACCTGGCCGCCATCATGCGCTACCACACTGACAGGCACTTCCTCCATCTGTACGGGGGAAACCTGTACCAACTCTTCCACAGCTACCCGGTCGAGTACAACGTTGGTGCACACCTGTCCGACAATGGACCCTCCATTCCCATAGTGTATGACCTTGGGGACAAAGAGTCTACCAAAAATGTATACGACCCTTACTCTGGAGGGGAGATTGAAGGAGGCTTCATCAGTTTCAGAGCCATAAACCATGAACGGGCAGCCACAGCCATCTGCTCTGGGGTCAAACCCAAAGGTGGTAATGTTGAACATTACTGTATAGGTGGATGTGGGTTTTTCCCTGAGGCTAACCCTCTTCAATGTGGGGATTTCACTGGCTTTGCCTGGAATGGCTATGGGACCCATATAGGCTTTAGTGCATCAAAACAGATGCTTGAGTCAGCAGTCTTACTCTTTTACCGCCAATGCACCATGCATTAACTTTTTTGGGGTTGTTTAATTGATTGAACG

Function

NR:

description
intelectin-like

GO: NA

KEGG:

id description
K17527 ITLN; intelectin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560267.2 True 1035 mRNA 0.50 1 25528117 25529151

Neighbor

gene id symbol gene type direction distance location
LOC110488171 NA coding downstream 69448 25455629 ~ 25458669 (-)
LOC118946560 NA coding downstream 70190 25457791 ~ 25457927 (-)
LOC118946558 NA coding downstream 70521 25457520 ~ 25457596 (-)
LOC118946559 NA coding downstream 71016 25457021 ~ 25457101 (-)
LOC118946555 NA coding downstream 71862 25456183 ~ 25456255 (-)
LOC110488175 LOC106570260 coding upstream 466427 25995578 ~ 26002997 (-)
LOC110488176 LOC106570259 coding upstream 490169 26019320 ~ 26043739 (-)
LOC110488182 LOC106570253 coding upstream 769562 26298713 ~ 26322682 (-)
zdhhc18b LOC106570247 coding upstream 1046296 26575447 ~ 26583341 (-)
LOC110488185 LOC106570245 coding upstream 1064947 26594098 ~ 26661878 (-)
G2311601 NA non-coding downstream 69518 25455277 ~ 25458599 (-)
G2311206 NA non-coding downstream 259410 25268502 ~ 25268707 (-)
G2311191 NA non-coding downstream 274188 25253703 ~ 25253929 (-)
G2311189 NA non-coding downstream 275743 25252168 ~ 25252374 (-)
G2311188 NA non-coding downstream 277141 25250752 ~ 25250976 (-)
G2311874 NA non-coding upstream 313392 25842543 ~ 25842806 (-)
G2311883 NA non-coding upstream 318638 25847789 ~ 25847993 (-)
G2311929 NA non-coding upstream 330394 25859545 ~ 25859787 (-)
G2311930 NA non-coding upstream 331487 25860638 ~ 25860905 (-)
G2311939 NA non-coding upstream 343233 25872384 ~ 25872794 (-)
G2311141 NA other downstream 364987 25162692 ~ 25163130 (-)
umad1 LOC106588684 other downstream 1548864 23962314 ~ 23979279 (-)
G2310415 NA other downstream 1710111 23816297 ~ 23818006 (-)
G2310381 LOC106570311 other downstream 1766766 23760515 ~ 23761351 (-)
LOC118946453 NA other downstream 2543983 22979779 ~ 22984566 (-)
G2312079 LOC106582599 other upstream 439832 25968983 ~ 25969361 (-)
G2313729 NA other upstream 995093 26524244 ~ 26524609 (-)
LOC110488229 LOC106570201 other upstream 3765105 29283078 ~ 29318812 (-)
G2316235 NA other upstream 3968779 29497930 ~ 29500245 (-)
G2316696 NA other upstream 4505147 30034298 ~ 30039597 (-)

Expression


Co-expression Network