LOC110488176 (LOC106570259)


Basic Information

Item Value
gene id LOC110488176
gene name LOC106570259
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 26019320 ~ 26043739 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468367.2
TCCGCTATTGGACAAAACTGCGCCTGTTCCATTTTGGAGGGCTGGTTGTTATTTGCTCATCATTATGGCTTTTATTGGCCAGGACTTCATATAATCTtaataaaacattattttcaaCTGAATATATTTTATGTAATGCAAAAAAGGTTAAAGATATCACATTTGTTAACGTTTAGAAAAACTGTAGGAATTGTGCGCcccttctttaaaaaaatattggtACGTTCTTTTCAATTGCGCTGCGAGCGTACATTGAGGCACAAGAAGAACGGGAAACCTGATCCGTATAACATGAAGTGGACCAATTTCGGTGGTAATTGATCGGATTATTCTACTTTAAGAAAAGGGAATACCACACTACGGCATAATTTCATTTTTCCCCCCGCGAAGAGGAGGATGGTGGCCGGGTAGTCACAACTTCGGACACGTTGCTGTTCCTTGGCACGCGCACTGATCCAGTTGGTGAGGCAGCAGTAGCAGGGTTCTGATCCTGGGGAGATGACGGAGGTGGTAGAGCCCAAGCTGGACTTTGCATCCTCGGGTCGCTCGGGGAGAAGGAATGCCCTACCTGACATCCTGGGTTCACCGGCTGGGGTCAACCCCACTGACCTGCAACTCAAATTGTCCGAGCTCCACCTCACAGATGGTCTGGGAGAAGCCCAGTCTCCCACGGCAGAGGAGGCCCCACTCCCTACAGAGAGCTCTGAGAGGAATGAGGGATCATAAGGCTGCCTGGGGGGAGGCCCCTAACTAGCACCGATGTTTACCTCCGGTGAAGCTGATGAGAACTGGAGAAGCGGGATAGATGGGTAGAACGATACAGAAGGACCGATGAAGGAGAATGATGGGCCTGTTTTGAACAGCAGCTGAGCTGCAGAGAGAAGGATGATGATAGGATGGACAGGGAATAGTCTCTATCACCCAATCTGAAAAGACTCTTAAGAAAAGcgttggtgtgtgtgggtggaaagatcacctctactccaacACACTGCCATGAGAAACAATGGATGTATGCTGATTATATACTGTTGTACACTACACATTTTTATGATTCAATCAAGACTCAAAACATTCAGCAACGGAGAAGTCACAAgtgaaaaaataaaacatttccaaTATCCTACTGGTGTCTATTAATTGGCCACTGATTCAACACAGCCAATCATGTGCGACGATGGGCGGATCCTAGTGGCCAATAGTGGTTCAGAGCTTTTTGATTGGTCTGGAAGAGAAAGTAATGATGTATTATAATGTACTGGATGTGTATGAAGAATGAGGTGAGAGTGAGTTAACTGTATAACAAGAGGCAGCTGGCTTCCTCTTTCGGTGTCACACGGACATTGATGTAATCATGAATTCACATCTGAGACTATAATACAGAGGGCAGTGTGGTATGTACTGCATGTATGGGTTTTTAAACATTGTTCAAATGGTTTTAATGACAACCAATGGGGCTAAAGCTAATGGATCGAGATGATTGCTGTGATTGTGACCAGAAGTGTTGATGTGTTTATTTGCAAAGGTTAGCTAGATGCTAAAGCTAACATTATGAGTAGCCTGACAATCCAGTCCCTATCTTTTAAAACATTCCTGAAATGAACCTAAAATGGTTTCTCACTGCCAACCATGTACTGTTGAAGCAGTCTGACGCTGTTGGCGCATTTCCATACAGGATTTACCTCAATGTAggctcagacttttctgtttccatctacgCGGGCACCCGTGTCTCACTGGGCCCTGGTTCTGGCGGACTTGTGGCCAACCCAGGCCGCTGGTACTTTTCAGCTGGCAATTACATAACAAACTGAACTTTTAACACCTCACAAAGCAACTGTTTTGATTATGCAGAGGCTGTTGATTCTGCTCTTCACTGTCAGCCCTAGCTATGGAAACCATTTCTCCTACTATAACATAAGGGTGTGTACACTAGTGTAAAGCTGGTGTAACAGTTTCACAACGGCATGTGAAAACTGCTGTTGTGTTCCTCTCAGCTCAAGGCTGTCTTTCATTAAAAGGATTTATATTTTTCCAGACTTCTCAGAAAATGTGCCTGGTAGCAGTTGACACAAACCTGCTTTGTTGTGTTCtatgggtgcgttcgtaaattcactctggttatctactccgatttcagagcactttcGTCTGAgggtgccagagcacagaataactaatttatgaacgctcaacacccgttgaatatggccggtgtcagtaaacgtcggccaAAAAAgcattgccagcagcacagttacagtcaccaacactctggatgacatgaaaacagcctaaccagctctgactattttactcaccctagcagagtgaggtgttctctcattttaGTCTTGAAGTAGATAgtcaacgttagccagttagcttgggtgcttgactctCGTAAGGTCAGAATGCTCTGATCAATCCTACTCCTTTGAATTTaggaacggacaatctgacaacactgaATTTAGGgatgcccagagcacactctaGATTGAATTTACCAACACCCCCTCCCCTATATCTCTGAAGTAATTTTAAACAGTATTTGGGCTATTTGTCCCGTAGAAGACGTCTACCAGGTCTTTGATGATAAACTGTATAGAAAAATGTCACATTTATCACAACAGTACATATGTTAATGATGTACCGGCTCAAAGAGGAATACCACCCACACTCACAGCAAGGCCTTGGAGATGGAAGGCTTGTGCACTTGCAGTGTGGTCAGCATATGCCTGTTGTCTGGGCATGGGAGCAAGCACCAAGCAACACCACCACCAAAGTGTTGCATCATGTATGGAGATGGCAGCATGCCTTCTGCCTCCTGCTGCTCCACTCAGCCACAGACGGACAGCCCGGGCATTCACACAGGCCCATTTTTTTACCCCCCCCTGGAGGCCAGCACACCGGCCCACTTTTTTTCTTGAAGCCCCTAGTATTATCTAAGTAATGGTAATTCTGCACAAAAACAAAAATTTAGACtggcccatctggcatttgcccgaACTGCCCTGTGGCCAGTCCGTGCCTGCACCTAGCAGCCTGTCTGAGAGAACTTGTATCTGTTCTATTTCACTCATCAACACATTAATAGAGCTGTGATCATATGCATGATCACGATATAGACTAATGATATGAACACTCAGGACCAGATGCACGGTGAACAGAAGGACAGCCATATACAGTACTTAGTAATTAATGCCAATATATACTGTTTAACATTACAGGATGCCAGTTATTACACTGttgtatatattgtgatattaCGCGAGGAAGAGTCTATTCACTATATATACATGTGTTCATATAGTGAATATACATTCACGATACAATACAAGAGAATGAACATGCTGTATTTTCAATCGTCTTTTTATGAAATGTTTGGGCTGTGTGTATCTTTGTATGGTTTTGTCTGAAGTGCAGGCAACTGATGCTCTTATTTGTGATGTACTTATTACTGGAGTTGTTCATGTAATAACTCAAGGTAAATGCTCATTCTATGGGGAGGAAAAATCAGAGGTGTGTCTCGTAGTGTACCCTGTTCTCAGTTGTGGTATGTGCAGTATATTGTATTTAGCATAATTCCACATGTCGATTCTTTCAGGTGGGTAGGCAACATGCTATAATAAATCCACAAAGATTCACATAGA
>TU2644737
AGAACGGGAAACCTGATCCGTATAACATGAAGTGGACCAATTTCGGTGGTAATTGATCGGATTATTCTACTTTAAGAAAAGGGAATACCACACTACGGCATAATTTCATTTTTCCCCCCGCGAAGAGGAGGATGGTGGCCGGGTAGTCACAACTTCGGACACGTTGCTGTTCCTTGGCACGCGCACTGATCCAGTTGGTGAGCAGTAGCAGGGTTCTGATCCTGGGGAGATGACGGAGGTGGTAGAGCCCAAGCTGGACTTTGCATCCTCGGGTCGCTCGGGGAGAAGGAATGCCCTACCTGACATCCTGGGTTCACCGGCTGGGGTCAACCCCACTGACCTGCAACTCAAATTGTCCGAGCTCCACCTCACAGATGGTCTGGGAGAAGCCCAGTCTCCCACGGCAGAGGAGGCCCCACTCCCTACAGAGAGCTCTGAGAGGAATGAGGGATCATAAGGCTGCCTGGGGGGAGGCCCCTAACTAGCACCGATGTTTACCTCCGGTGAAGCTGATGAGAACTGGAGAAGCGGGATAGATGGGTAGAACGATACAGAAGGACCGATGAAGGAGAATGATGGGCCTGTTTTGAACAGCAGCTGAGCTGCAGAGAGAAGGATGATGATAGGATGGACAGGGAATAGTCTCTATCACCCAATCTGAAAAGACTCTTAAGAAAAGcgttggtgtgtgtgggtggaaagatcacctctactccaacACACTGCCATGAGAAACAATGGATGTATGCTGATTATATACTGTTGTACACTACACATTTTTATGATTCAATCAAGACTCAAAACATTCAGCAACGGAGAAGTCACAAgtgaaaaaataaaacatttccaaTATCCTACTGGTGTCTATTAATTGGCCACTGATTCAACACAGCCAATCATGTGCGACGATGGGCGGATCCTAGTGGCCAATAGTGGTTCAGAGCTTTTTGATTGGTCTGGAAGAGAAAGTAATGATGTATTATAATGTACTGGATGTGTATGAAGAATGAGGTGAGAGTGAGTTAACTGTATAACAAGAGGCAGCTGGCTTCCTCTTTCGGTGTCACACGGACATTGATGTAATCATGAATTCACATCTGAGACTATAATACAGAGGGCAGTGTGGTATGTACTGCATGTATGGGTTTTTAAACATTGTTCAAATGGTTTTAATGACAACCAATGGGGCTAAAGCTAATGGATCGAGATGATTGCTGTGATTGTGACCAGAAGTGTTGATGTGTTTATTTGCAAAGGTTAGCTAGATGCTAAAGCTAACATTATGAGTAGCCTGACAATCCAGTCCCTATCTTTTAAAACATTCCTGAAATGAACCTAAAATGGTTTCTCACTGCCAACCATGTACTGTTGAAGCAGTCTGACGCTGTTGGCGCATTTCCATACAGGATTTACCTCAATGTAggctcagacttttctgtttccatctacgCGGGCACCCGTGTCTCACTGGGCCCTGGTTCTGGCGGACTTGTGGCCAACCCAGGCCGCTGGTACTTTTCAGCTGGCAATTACATAACAAACTGAACTTTTAACACCTCACAAAGCAACTGTTTTGATTATGCAGAGGCTGTTGATTCTGCTCTTCACTGTCAGCCCTAGCTATGGAAACCATTTCTCCTACTATAACATAAGGGTGTGTACACTAGTGTAAAGCTGGTGTAACAGTTTCACAACGGCATGTGAAAACTGCTGTTGTGTTCCTCTCAGCTCAAGGCTGTCTTTCATTAAAAGGATTTATATTTTTCCAGACTTCTCAGAAAATGTGCCTGGTAGCAGTTGACACAAACCTGCTTTGTTGTGTTCtatgggtgcgttcgtaaattcactctggttatctactccgatttcagagcactttcGTCTGAgggtgccagagcacagaataactaatttatgaacgctcaacacccgttgaatatggccggtgtcagtaaacgtcggccaAAAAAgcattgccagcagcacagttacagtcaccaacactctggatgacatgaaaacagcctaaccagctctgactattttactcaccctagcagagtgaggtgttctctcattttaGTCTTGAAGTAGATAgtcaacgttagccagttagcttgggtgcttgactctCGTAAGGTCAGAATGCTCTGATCAATCCTACTCCTTTGAATTTaggaacggacaatctgacaacactgaATTTAGGgatgcccagagcacactctaGATTGAATTTACCAACACCCCCTCCCCTATATCTCTGAAGTAATTTTAAACAGTATTTGGGCTATTTGTCCCGTAGAAGACGTCTACCAGGTCTTTGATGATAAACTGTATAGAAAAATGTCACATTTATCACAACAGTACATATGTTAATGATGTACCGGCTCAAAGAGGAATACCACCCACACTCACAGCAAGGCCTTGGAGATGGAAGGCTTGTGCACTTGCAGTGTGGTCAGCATATGCCTGTTGTCTGGGCATGGGAGCAAGCACCAAGCAACACCACCACCAAAGTGTTGCATCATGTATGGAGATGGCAGCATGCCTTCTGCCTCCTGCTGCTCCACTCAGCCACAGACGGACAGCCCGGGCATTCACACAGGCCCATTTTTTTACCCCCCCCTGGAGGCCAGCACACCGGCCCACTTTTTTTCTTGAAGCCCCTAGTATTATCTAAGTAATGGTAATTCTGCACAAAAACAAAAATTTAGACtggcccatctggcatttgcccgaACTGCCCTGTGGCCAGTCCGTGCCTGCACCTAGCAGCCTGTCTGAGAGAACTTGTATCTGTTCTATTTCACTCATCAACACATTAATAGAGCTGTGATCATATGCATGATCACGATATAGACTAATGATATGAACACTCAGGACCAGATGCACGGTGAACAGAAGGACAGCCATATACAGTACTTAGTAATTAATGCCAATATATACTGTTTAACATTACAGGATGCCAGTTATTACACTGttgtatatattgtgatattaCGCGAGGAAGAGTCTATTCACTATATATACATGTGTTCATATAGTGAATATACATTCACGATACAATACAAGAGAATGAACATGCTGTATTTTCAATCGTCTTTTTATGAAATGTTTGGGCTGTGTGTATCTTTGTATGGTTTTGTCTGAAGTGCAGGCAACTGATGCTCTTATTTGTGATGTACTTATTACTGGAGTTGTTCATGTAATAACTCAAGGTAAATGCTCATTCTATGGGGAGGAAAAATCAGAGGTGTGTCTCGTAGTGTACCCTGTTCTCAGTTGTGGTATGTGCAGTATATTGTATTTAGCATAATTCCACATGTCGATTCTTTCAGGTGGGTAGGCAACATGCTATAATAAATCCACAAAGATTCAC

Function

NR:

description
PREDICTED: cAMP-dependent protein kinase inhibitor alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468367.2 False 3656 mRNA 0.44 3 26019320 26043739
TU2644737 True 3382 lncRNA 0.44 3 26019325 26043474

Neighbor

gene id symbol gene type direction distance location
LOC110488175 LOC106570260 coding downstream 16323 25995578 ~ 26002997 (-)
LOC110488174 LOC106588632 coding downstream 490169 25528117 ~ 25529151 (-)
LOC118946560 NA coding downstream 561393 25457791 ~ 25457927 (-)
LOC118946558 NA coding downstream 561724 25457520 ~ 25457596 (-)
LOC118946559 NA coding downstream 562219 25457021 ~ 25457101 (-)
LOC110488182 LOC106570253 coding upstream 254974 26298713 ~ 26322682 (-)
zdhhc18b LOC106570247 coding upstream 531708 26575447 ~ 26583341 (-)
LOC110488185 LOC106570245 coding upstream 550359 26594098 ~ 26661878 (-)
ntl ntl coding upstream 640240 26683979 ~ 26687789 (-)
LOC110488186 nudc coding upstream 661477 26705216 ~ 26712886 (-)
G2312132 NA non-coding downstream 578 26017977 ~ 26018742 (-)
G2312104 LOC100846954 non-coding downstream 15001 26003804 ~ 26004319 (-)
G2312103 NA non-coding downstream 15714 26003274 ~ 26003606 (-)
G2312094 NA non-coding downstream 26873 25992227 ~ 25992447 (-)
G2312081 NA non-coding downstream 44935 25974071 ~ 25974385 (-)
G2312152 NA non-coding upstream 3711 26047450 ~ 26047723 (-)
G2312160 NA non-coding upstream 6457 26050196 ~ 26059490 (-)
G2312165 NA non-coding upstream 25688 26069427 ~ 26069813 (-)
G2312402 NA non-coding upstream 172875 26216614 ~ 26217237 (-)
G2312442 NA non-coding upstream 218753 26262492 ~ 26263642 (-)
G2312079 LOC106582599 other downstream 49959 25968983 ~ 25969361 (-)
G2311141 NA other downstream 856190 25162692 ~ 25163130 (-)
umad1 LOC106588684 other downstream 2040067 23962314 ~ 23979279 (-)
G2310415 NA other downstream 2201314 23816297 ~ 23818006 (-)
G2310381 LOC106570311 other downstream 2257969 23760515 ~ 23761351 (-)
G2313729 NA other upstream 480505 26524244 ~ 26524609 (-)
LOC110488229 LOC106570201 other upstream 3250517 29283078 ~ 29318812 (-)
G2316235 NA other upstream 3454191 29497930 ~ 29500245 (-)
G2316696 NA other upstream 3990559 30034298 ~ 30039597 (-)
G2318269 NA other upstream 5091768 31135507 ~ 31135959 (-)

Expression


Co-expression Network