LOC118946516 (LOC106595335)


Basic Information

Item Value
gene id LOC118946516
gene name LOC106595335
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 26076938 ~ 26079433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971648.1
TGACGGATTCCCAGCTGCCTGGTTCCCGCTCTGGTTTCATGCGTAGAACCCAGGACAACAAGCTCGGGTTCCACATTGATGCCTTTAGGTTCTACCAGGAGGACAGGGCAGAGCTGTACATCACCTGCCACCTTATGGCAGTCCCTGTCATGGACCATGCAGAGCCTAGCAACAAGGCATGCTCCTTCATTGATGGCAGATGGAGGTCTGCTGATGAGAATGATTTGCTATGTGGGCCTTGTCCAAGCCTGAGTAGACAGAAGGGGGTTGATCAAGCTCCAGCACAACGTCCCCTCAGTCCAAGACTAGGTGGTAGGCAACTTGAACCTCGTGTCTACCGCAACAAACCCCCAGCCTCTGGTGACAATTGGAGTATTGGGATGAAGGCCAAGAAAGtatgggaccaggctactacTTTGGGCCCCATGATTGTCCTCCCAAGTAAACAGAAGAGTACACCTCTATCTCCACGGACGAGTGGAGGTATCGATATACCTGGCTTCCCTGCCTCAACAGGGGACAGGAAGCCCGTATCACCTGGCAGTCTTTGGCGTGGCATGGACTTCAAGAGAGGACCTTATTTCGCCCAATCCCAAAATGAGGTTAGTCCCTTGGGCCCAAGGGTCGGACCCAACAACAAGCACGGTCTCGTTAGCTCTGCAACATATGATGGCTTCGTCAGGCAGAAAGAACTAATCGCCCAACGAGAGCTGGAGGCCACTCCAGACCCTGAGTTGATTCCTGCACCTGAGCCCATTGGAGACCTTGAGGTTACCACAGAGAAAGAGGGTCTGGGTGAAGAGGAGGATCAGTATGAGATTGGAACCTATTGAAAGGTCCACTATCCAATTTCTAGAATTGGAAGGCGCTGTTGTGGGTGGCCCATAATAGACTTGCTCCAAGCAGCAGCAGACTCCAACTCACTGAGGTTGGTGCCGGTCCTGATGTCCCAGCACACAAGGAGGATGACCCTACAACAAAGTGACATAAGCACCACATCTGCTCCTGGCGACGTCAACCAGGGACGGGACTACCACAACACTGAGACGATGCCTGTTAATCTCTctgaaaaataaatgatttaatgCTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971648.1 True 1090 mRNA 0.52 7 26076938 26079433

Neighbor

gene id symbol gene type direction distance location
LOC118946546 LOC106595335 coding upstream 142 26075092 ~ 26076796 (+)
LOC118946509 LOC106595335 coding upstream 6558 26065936 ~ 26070380 (+)
LOC110488177 LOC106595335 coding upstream 15638 26056853 ~ 26061300 (+)
LOC118946515 LOC106595335 coding upstream 24707 26047780 ~ 26052231 (+)
LOC110489412 LOC106570261 coding upstream 292120 25496044 ~ 25784818 (+)
serinc2 LOC106570256 coding downstream 13111 26092544 ~ 26109748 (+)
LOC110488179 LOC106570255 coding downstream 45046 26124479 ~ 26167353 (+)
LOC110488180 LOC106570254 coding downstream 92905 26172338 ~ 26176958 (+)
LOC110488181 LOC106570268 coding downstream 142276 26221688 ~ 26264034 (+)
LOC110488183 LOC106570248 coding downstream 416898 26496331 ~ 26509065 (+)
G2312150 NA non-coding upstream 30789 26045916 ~ 26046149 (+)
G2312116 NA non-coding upstream 58014 26018705 ~ 26018924 (+)
G2312115 NA non-coding upstream 59445 26017221 ~ 26017493 (+)
G2312062 NA non-coding upstream 61906 26014828 ~ 26015032 (+)
G2312014 NA non-coding upstream 73301 26003196 ~ 26003637 (+)
G2312191 NA non-coding downstream 38258 26117691 ~ 26121049 (+)
G2312251 NA non-coding downstream 137643 26217076 ~ 26217517 (+)
G2312260 NA non-coding downstream 185255 26264688 ~ 26264909 (+)
G2312263 NA non-coding downstream 187892 26267325 ~ 26267732 (+)
G2311978 NA other upstream 157138 25919152 ~ 25919800 (+)
G2311528 NA other upstream 340091 25735194 ~ 25736847 (+)
LOC110488142 LOC106570295 other upstream 1919502 24151527 ~ 24157473 (+)
LOC110488133 NA other upstream 2096159 23979350 ~ 23981983 (+)
G2308224 NA other upstream 3472217 22604320 ~ 22604721 (+)
G2312300 NA other downstream 245719 26325152 ~ 26325383 (+)
G2312752 NA other downstream 653871 26733304 ~ 26733645 (+)
LOC110488193 LOC106570239 other downstream 737251 26816398 ~ 26820899 (+)
G2312933 NA other downstream 954366 27033799 ~ 27039185 (+)
LOC118946485 LOC106570234 other downstream 1118411 27197844 ~ 27202811 (+)

Expression


Co-expression Network