LOC110488180 (LOC106570254)


Basic Information

Item Value
gene id LOC110488180
gene name LOC106570254
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 26172338 ~ 26176958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560273.2
ATGTGGCGTGTTCTACATTATCTCTGTATCAGGGGTCATGTCACACGTGTGTCAAATTGACGACACAGATAGCGTGTGTGACAGTGGGGTCATCCGGATGCGTCTGGCTATGACCTCTCTGTTCCatgggggctgctccctctgctgtgaACATCACTAGCCCTGAGGATCTGTAGTGGCAGCATGCAAAACAACAGTCCCCATCATCAGACACTATCTTTACAGCCTTTCCTTTTACTGATGACACCAGGTCTTCACTCCGCCTACAGGTTTCCCTCTCCTGCCTGCCTTGTGTTTTGGAAAAATCCAAAGCATTCCCAGATTCCAAGCCTTTTCTGGTgatttcctgtctctgtctctgtcaatgaCAATGACCTCCATACTCCATAAAGGTTAAAACAACTACCCAATAGCAGTTCATTCCTTTTCCGTCTCTCTTCCTGTTGCCTGGAATGTGTCAAGagtgagaggcaggcaggcagttgcTGAACGGTGATCATTGTGTAACAACATGGGCAGTAGGCGTGGTTAGGTAGGCGTGGTTAGGTAGGTGACATCACAAAGTGATGGGTATAAGTAGCGGGGCCAGGGGACACTGCAGCACAAAGCACCtgttgcctctctctcgctctttactGGCATCACTCAGGACTGTAAAAGCTGTAGCTACTATTACTGTTAACTCTACAAGTGTGTGTACTCTACTGTTTTGTGGAATCTTGGATATTATTGCATCCTGCGTCTTCAGAGATACTCTGCCAGAGAATAACTATGGCTCTATCACTGAACTCCATCCTGGCTCTCACCATCATCACACTCTGTGTGCTCCTGCAGGAGGGTTTTGGGCTCCCTGTATCCAGCCAGCCTGAGCTCCCTGCCCAATCCCCGTCCCAGAAGATCCCACACCACACCAGGGTTAAACGATGCTCCTGCAATAACTGGCTGGACAATGAATGCATCTACTTCTGTCACCTGGACATCATTTGGGTCAACACTCCCAATAAGGTTATCCCCTATGGTATTGGCAGCCCCCTGTCCCGACGTCGCCGCTCTACCGGGCGATGTGAATGTGCCCACCCAGCCGACAGGACCTGCTCCGGATTTTGCCACAACAGCTCAGAGAACCCCAGATTCGTAGTGGTAGGCCACTCAGACCAGACCCTGGACCAGACTGTTAGCAGTCCAGACACAACCAGCAACGACCTACTGACCTCTCTCAGAAACATGTTTCGatccaacatggctgccatagagaAAGGTTCTCCCTCCAGGAAGAAGAATGCCTCCAGAGTCAACAGACTGAACATcgggtagaagaggaggagggacgaAGAGGAGCTTGAATAGCTCCAGAGCATTCGAACAAAGACCTCCTGGAGGAGTCTAGGGAGTCCTCCCCCGGGAAGACAGAGAGGTTCTGAGAGGAGAGGCCCTGAGAAGAGGGCAAAGATGGAACACTTCCCAATGGCTGCCTGCTGATTGTTGAATATCACACAGTGGACTGGATATGGACATTATCTGGATATGAGTCTTGGACTAATCTAGCTAAGAGTCTGGGTTAGAAGACTAGGGAGGTTTAAGTGTGTCCTCTGTGAACTGTGACAGTCTGCACTAGAATGGTTACTGACTGTTTGCTGGGCATGGGTTGTCATCATGTTCTAAACATAAATACACTTTCTGTGTCTGAGCACATGAAATGGGTGGATGCAAGCCAAGGCATTCTGGAGTGATGTTTGCCTATGTTTACTTTACAGGCTTACTTCATTAGTGCCTTGAAAATATTGACCACTATTGTCATTTGGATTTTGATCCTTACTTTACCTGTCGCACGACATCTACTATATCATAgaataaaaatcaaaaaagaaTCCTCTGTATCAGAGATTGATTGCCAGTTTATAGTGATTGCCGTGCGCGCGTTAAAATTACTTGAAATACATTTGACACATGAAGGACATGCCTTTAAGGAACAGGGAATTACTATACACACAGCCTTCCTGTAGCAGCAGATAAAAGCAGGTCTATTGTGATGGCGGAAATATTTATTGCACACTGTAGCCACTGTTGATTGTTTTGATTGTAGACAGAGTGAAGGCAGCAGGTTTCAATAGGTCTGCTCCTTGCCAAATATGCAGTGATTGTTTTTCTGCTTCCATAACAAATGTCCATTAAATGTCAATGTCATTACCCATTAGGAAATTATGACACTGCACTTTTGTTCTAATGCCTTCAAAGGAATGTGTTTTTATGTCCAGTAGGCTTTAGATGGGTTGGGCTGATAGCTGAACTCCAGCCACTGTCTGACCACGAGGCATTTACTGTAAACACTACGTCAAAAAACAAGTCTTCCACTGATGTTGAAGTCCAATACCACAATGCCGTATATTTatgatattattatttatttatttgtttgtgtgttgttGAGTAATTTGTGTATCAAAATGCTGGACTGTGCTTTTGTTGTATAAACTGTTGTTATCCCTAAGAAGGAGAATTCACCCTCAATAGTCTATTTAGCAGTCAAGGACACCATAGGACATGTTTACCCATGAATTGTTCTATTCCAAGCTATTCATATTATCTACTGTACACGTACAAATCTCTGAAATGATTTATTTAACTTATTTGCGGggtatatttatatatttgtgtTGTGTGAGTTTAATATGTGAGGAAATAAATACTAA

Function

NR:

description
endothelin-2-like

GO: NA

KEGG:

id description
K16367 EDN2; endothelin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560273.2 True 2690 mRNA 0.45 4 26172338 26176958

Neighbor

gene id symbol gene type direction distance location
LOC110488179 LOC106570255 coding upstream 4985 26124479 ~ 26167353 (+)
serinc2 LOC106570256 coding upstream 62590 26092544 ~ 26109748 (+)
LOC118946516 LOC106595335 coding upstream 92905 26076938 ~ 26079433 (+)
LOC118946546 LOC106595335 coding upstream 95542 26075092 ~ 26076796 (+)
LOC118946509 LOC106595335 coding upstream 101958 26065936 ~ 26070380 (+)
LOC110488181 LOC106570268 coding downstream 44751 26221688 ~ 26264034 (+)
LOC110488183 LOC106570248 coding downstream 319373 26496331 ~ 26509065 (+)
LOC110488188 LOC106570251 coding downstream 537153 26714111 ~ 26716280 (+)
LOC110488189 NA coding downstream 570984 26747942 ~ 26750163 (+)
LOC110488192 LOC106570240 coding downstream 625081 26802039 ~ 26810237 (+)
G2312191 NA non-coding upstream 51289 26117691 ~ 26121049 (+)
G2312150 NA non-coding upstream 126189 26045916 ~ 26046149 (+)
G2312116 NA non-coding upstream 153414 26018705 ~ 26018924 (+)
G2312115 NA non-coding upstream 154845 26017221 ~ 26017493 (+)
G2312062 NA non-coding upstream 157306 26014828 ~ 26015032 (+)
G2312251 NA non-coding downstream 40118 26217076 ~ 26217517 (+)
G2312260 NA non-coding downstream 87730 26264688 ~ 26264909 (+)
G2312263 NA non-coding downstream 90367 26267325 ~ 26267732 (+)
G2312265 NA non-coding downstream 92504 26269462 ~ 26269685 (+)
G2311978 NA other upstream 252538 25919152 ~ 25919800 (+)
G2311528 NA other upstream 435491 25735194 ~ 25736847 (+)
LOC110488142 LOC106570295 other upstream 2014902 24151527 ~ 24157473 (+)
LOC110488133 NA other upstream 2191559 23979350 ~ 23981983 (+)
G2308224 NA other upstream 3567617 22604320 ~ 22604721 (+)
G2312300 NA other downstream 148194 26325152 ~ 26325383 (+)
G2312752 NA other downstream 556346 26733304 ~ 26733645 (+)
LOC110488193 LOC106570239 other downstream 639726 26816398 ~ 26820899 (+)
G2312933 NA other downstream 856841 27033799 ~ 27039185 (+)
LOC118946485 LOC106570234 other downstream 1020886 27197844 ~ 27202811 (+)

Expression


Co-expression Network