LOC110488183 (LOC106570248)


Basic Information

Item Value
gene id LOC110488183
gene name LOC106570248
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 26496331 ~ 26509065 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560283.2
CACAACCAATCAGGACGTTTATGTTAATCCCATTTTCTTTAAACCCGTCAATATGCTTCCAACTGGATTACAGTTAGAAGTGTTTCACAGTCACAGCGCAGGAGAGTTTTGGAGATGACAAACGGTTTAGTTTACCGATCTATGTTTTATATGTGCAGAACTCTCGGACCTTTAGCCTAGATTGTTTTGAAACGTATGTTCTAAGTGACATCTGAGAAACGCAACTAGGGCGATTTTGTATGATTTATTGAAGATTTCAAGTTTCATTCCAACTTCAAAAGAAACACCTATTTTGGGAATTGCTTTGGTACTGTCCATAATAGCCTACATCCACCAACACTACCGAAGATTTTACTACCTTTCCCCGTCCCATCATGTCCTTCGGGGATGAGTCGGAGCAGAGTCGGCGGTTGTGTGTGTTGTCTTGGGAGCAGGTGCAGAGGTTGGACTCCATCCTCGGAGAGAGCGTCCCTATTCACGGACGCGGAAACTTCCCGACGCTTTCCGTACAGCCTCGGCAGATAGTCCAGGTGGTTCGGGCGCGACTGCAGGAGCGTGGTGTGGTGGTCCGAGATGTGAAGCTGAACGGTTCAGCAGCCAGTTATGTGCTCCACCAGGACACGGGCCTGGGCTACAAGGACTTGGACCTCATCTTCGGCCTGAACCTGACTGATGACAAGACCTTTCGTGTGGTCAAAGACGTGGTCCTGGACAGCCTGGTGGACTTCCTACCTCCGGGGCTCAGCCGTGTCTCGCCCATGACCCTCAAAGAGGCCTACGTCCAGAAGCTGGTGAAGGTATGCAACGACACAGACCGCTGGAGCCTGATCTCCCTCTCCAACAACACGGGGAAGAATGTGGAGCTGAAGTTTGTGGAATCCCTCCGAAGGCAGTTTGAGTTCAGCGTGGACTCGTTCCAGATCGGCCTGGACTCACTGCTGCTGTTCGACCGCTGCTCAGAGACGGCCATGTCCATGTCTGAGAGCTTCCACCCCACTGTGGTCGGAGAGAGCATGTACGGGGACTTCCAGGAGGCCCTGGGACACCTCCGCACCAGGACCATAGCCACGCGCAGCCCCGAGGAGATCCGGGGCGGAGGACTGCTGAAGTACTGCCACCTGCTAGTGCGGGGATTTAAACCGGACTCAGAGGCTCAGATGAAGCTTCTGCAGCGCTATATGTGCTCACGCTTCTTCATCGACTTCCCGGACATTGGCGAGCAGCAGCGGAAGCTGGAGGCGTATCTCCAGAACCACTTCAATGGCATGGAGGACAAGCGCTACGACTGCCTGGTGACGCTGCGGCATGTGGTGGACGAGAGCACTGTTTGCCTGATGGGACACGAGCGCCGCCAGACACTGGCACTGATCTCGGCACTGGCGCTACGGGCCATGGCAGAGCAGAACGCCATCCCGGCCCTGGCTAACATCACCTGTTACTACCAGCCGGCGCCTTATGTCAGAGACGTCAACTTCAGTAACTACTACATAGCGAGGGTCCAGTCGCCCATGAGTAGCTCTTATAGTAACTCTTACCAAAGGACATGGCTGCCTTGTAGCTAAATGAGGAGGATCAGTAAAGCGTAAGGGgactatgtttttttttaagctTCTAGTTTCCCAAATGGTAGCCTATTACCAGgaaactatatagggaatagggtgccattgtagACGCACCCTCTGTCTTATAGTAACGTGAGCTGAGCAGTTCGATAGAGTGCTTTGCTCAGTCCACCTGTAGCAAAATGGCTTCTTGTGGGAGACTTGAGGACAACGTCCACTGAGGACCAAAAAAAGGAAAAATTGTATTGTATCTTTTTGCCAAATCTTCAGTTGCAACCCATCCCACTAAATTATATCAATGAATACTGCTGTAAATCTGATTTGAGCCGTTGTTATGATGTTTGTTCTTTTCTGTTCTGAAGCGTTGGCTTCTTTTGATATATGTACGATGAAGACTGGTGGTCTATTTTGATgtgtgtggaatggttgaaatgtGACGGAAGAACTTTTCAGCTTCCCAGTCTTGATAGGGGACTTGAAGTATATTTGGATCCATGAAAGGAAATGTAAATAAGAAACCAGGAAGTTGTATTCTGTTCTGACTGTGGTTTCAACTGGCCTTTTCCTTAAAAACGTAAGGACCAAAGAATTCAGTTCTTGTGTTGCGTGAAGAAAATACTTTTGTGATTCTAAGTGCCTGAAAAACCAACCGACATCTTATAGTAGTTTGATCTGTAAAAGAAGTAACTGTATTTGAATCTATTTCACCCAGGTTACTGTACATTTCTATATCCAGGGTCAGGGTATTTCTTTttcaaataataaaacatttaaatggaaA

Function

NR:

description
protein FAM46A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560283.2 True 2346 mRNA 0.48 2 26496331 26509065

Neighbor

gene id symbol gene type direction distance location
LOC110488181 LOC106570268 coding upstream 232297 26221688 ~ 26264034 (+)
LOC110488180 LOC106570254 coding upstream 319373 26172338 ~ 26176958 (+)
LOC110488179 LOC106570255 coding upstream 328978 26124479 ~ 26167353 (+)
serinc2 LOC106570256 coding upstream 386583 26092544 ~ 26109748 (+)
LOC118946516 LOC106595335 coding upstream 416898 26076938 ~ 26079433 (+)
LOC110488188 LOC106570251 coding downstream 205046 26714111 ~ 26716280 (+)
LOC110488189 NA coding downstream 238877 26747942 ~ 26750163 (+)
LOC110488192 LOC106570240 coding downstream 292974 26802039 ~ 26810237 (+)
LOC110488193 LOC106570239 coding downstream 307333 26816398 ~ 26820899 (+)
LOC110489414 trappc9 coding downstream 318971 26828036 ~ 27116229 (+)
G2312561 NA non-coding upstream 52747 26442627 ~ 26443584 (+)
G2312554 NA non-coding upstream 63957 26432160 ~ 26432374 (+)
G2312531 NA non-coding upstream 101209 26393820 ~ 26395122 (+)
G2312518 NA non-coding upstream 123270 26372853 ~ 26373061 (+)
G2312514 NA non-coding upstream 131119 26364991 ~ 26365212 (+)
G2312619 NA non-coding downstream 9636 26518701 ~ 26519954 (+)
G2312628 NA non-coding downstream 24189 26533254 ~ 26533466 (+)
G2312631 NA non-coding downstream 31041 26540106 ~ 26540335 (+)
G2312635 NA non-coding downstream 36191 26545256 ~ 26545572 (+)
G2312650 NA non-coding downstream 54333 26563398 ~ 26563701 (+)
G2312300 NA other upstream 170948 26325152 ~ 26325383 (+)
G2311978 NA other upstream 576531 25919152 ~ 25919800 (+)
G2311528 NA other upstream 759484 25735194 ~ 25736847 (+)
LOC110488142 LOC106570295 other upstream 2338895 24151527 ~ 24157473 (+)
LOC110488133 NA other upstream 2515552 23979350 ~ 23981983 (+)
G2312752 NA other downstream 224239 26733304 ~ 26733645 (+)
G2312933 NA other downstream 524734 27033799 ~ 27039185 (+)
LOC118946485 LOC106570234 other downstream 688779 27197844 ~ 27202811 (+)
G2313197 NA other downstream 984034 27493099 ~ 27493735 (+)

Expression


Co-expression Network