LOC110488188 (LOC106570251)


Basic Information

Item Value
gene id LOC110488188
gene name LOC106570251
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 26714111 ~ 26716280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560291.2
AGGACTTGGGCTACTGGAGTTGTCAGACAGTCAGAGCTGCTGATCACACTGCTGGACAATATTTCAAAGAGAGAATGTGGCTATTCTCACCTCTGTAGCATAGCTCTGTAAAGCCTCCGCACTGGGGACATCTTATCATCTACTGATTGATTGACACTTTATTGATCCTCAAAGGAAAATTCATCATGATGTTTCCACTTGAAGAGATGAAGACCACCTGTCACTGTTCAGGTTACCGGGAGCAACAACATCAGCCTCACACCATCCTGTACAATATCCTGAGCCGGGCGGACagtaactacaacaacaacaacagtctgATCAACAACAACCACGTGAACCAGTATGACTACAACATGATAATGCCTCACAACTGTCATTGCGAGTGGCGACGGGCAGTGTGTCTGAAGAACCCTGCGGGAACCTGTCAGGTGGCGTCTGATGTTCTGGTCAAAACCATCCGCTTCATGAAGAGTTTACCCTCCTTCAGTCAGCTTCCAGTGGATGATCAGCTATCTCTGCTGAGGGACTGCTGGGTGCCCCTGTTCTCTCTGGGCCTGGCCCAAGAACGGACTGTGTTCGAGGTGATGGATGTACCACAGGCTAGCATGCTGAGGAAGATTCTCCTTAACAGTCAGGGGCCACGGAGTGAGGAAGAgcaagaggaggaagatgaggggaAGAGGTCTCTGCCCACACTGGCTGGGGTGCATAAACTCAGATCCTGTCTGAACAGACTGTGGACTCTGAATCTAAGCCCAAAGGAATATGCCTATCTGAAGGGTGCTATGCTGTTCAATCCAGACGTCCCAGGATTGAGCACCACTGTATTTATCAACAGTCTCCAACAGGAGGCCCAGAGAGCTCTACAGGAGGTTGTCCTGACCCTTCACCCAGGAAACTCGGGTCGATTCAGCCACATCCTACTATCGACTTCTGCCCTAcaggctgtcagccaatcactCATCACAGAACTGTTCTTCAGACCTGTTATTGGTCAGGCGAATCTGTTTGACTTGTTAAGTGAGATGCTGTTTATGAGACAAGAGTACAGCTGAAAGTTTGTGCGTGTGTATGGGGTATGTGTGTGAATTACATTTTAGGTTATTTTCTACTGACAAATATGAATGTGAAGATTGCAACTAAGCAATACAAGTTTTATAAACAAAATGTTTCAGTTTCTCTCTTCTTTACACATATTTAATCACTCTTCTATCATTCATTTTTGGCATACATCTGACAATTTATCAGTGGTGTGATAAAAATAAATGAAGTGAGAGCTACTGTATTTTCCACTGATAGAAAAATCATGGACTAATTGTACTCGCTCTTAGCATGATATGTACTCTGGCTCCTTCTAGTGGTTTCCTACATGCAACTACAAACATGTTGTGCTGTATACCATACAGGGAAGTACAGAATGGAAAGTACCAAAAATCCCTTGAGTGATATTACCTGGAATTGAACATTTCAATGCATGATAAGGGAGACTAAATGTGGCATTGGGCCATGTATTAATACTCAACTAGCTCAACAATGTGTAAACAGTTATCCATTTCCTGTAAACCTACCTCTTATCAATTTCCTGTCTATGGCCAGAACCAGAATAACCTGTTTTACATGAACAACCAAACATGTAGTCAGTCATCCTGTTACAGTTATTTGGTGGCCTGTATTATTTTGTCCTTGACAAAGATAAAAGTAATCCCCAGGGGGCACAAATGAACACCCCGTCAGTGTGCACCTGCCAGAGTCTGTGTAGCGTAAGTCTTAAATGTTGGCCTGTTCAACATGGCAAAGCATTACAGAACATTCAGACAAAAATGTATTGAGTAGAATCAAAAATATGCTTGCCTTCCATTGTAAGAAAACATTATTGTGTCAGATCTTTTCAATCTTTTGACATGCTAAAAGTTTCACCTCA

Function

NR:

description
nuclear receptor subfamily 0 group B member 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560291.2 True 1924 mRNA 0.43 2 26714111 26716280

Neighbor

gene id symbol gene type direction distance location
LOC110488183 LOC106570248 coding upstream 205046 26496331 ~ 26509065 (+)
LOC110488181 LOC106570268 coding upstream 450077 26221688 ~ 26264034 (+)
LOC110488180 LOC106570254 coding upstream 537153 26172338 ~ 26176958 (+)
LOC110488179 LOC106570255 coding upstream 546758 26124479 ~ 26167353 (+)
serinc2 LOC106570256 coding upstream 604363 26092544 ~ 26109748 (+)
LOC110488189 NA coding downstream 31662 26747942 ~ 26750163 (+)
LOC110488192 LOC106570240 coding downstream 85759 26802039 ~ 26810237 (+)
LOC110488193 LOC106570239 coding downstream 100118 26816398 ~ 26820899 (+)
LOC110489414 trappc9 coding downstream 111756 26828036 ~ 27116229 (+)
LOC110488194 LOC106570237 coding downstream 424742 27141022 ~ 27183286 (+)
G2312739 nudc non-coding upstream 1229 26711484 ~ 26712882 (+)
G2312741 NA non-coding upstream 5720 26707275 ~ 26708391 (+)
G2312691 NA non-coding upstream 81820 26627469 ~ 26632291 (+)
G2312664 NA non-coding upstream 125342 26588465 ~ 26588769 (+)
G2312650 NA non-coding upstream 150410 26563398 ~ 26563701 (+)
G2312761 NA non-coding downstream 30515 26746795 ~ 26747063 (+)
G2312770 NA non-coding downstream 42339 26758619 ~ 26758826 (+)
G2312773 tpbg non-coding downstream 47411 26763691 ~ 26764603 (+)
G2312759 NA non-coding downstream 49527 26765807 ~ 26769740 (+)
G2312760 NA non-coding downstream 53623 26769903 ~ 26772129 (+)
G2312300 NA other upstream 388728 26325152 ~ 26325383 (+)
G2311978 NA other upstream 794311 25919152 ~ 25919800 (+)
G2311528 NA other upstream 977264 25735194 ~ 25736847 (+)
LOC110488142 LOC106570295 other upstream 2556675 24151527 ~ 24157473 (+)
LOC110488133 NA other upstream 2733332 23979350 ~ 23981983 (+)
G2312752 NA other downstream 17024 26733304 ~ 26733645 (+)
G2312933 NA other downstream 317519 27033799 ~ 27039185 (+)
LOC118946485 LOC106570234 other downstream 481564 27197844 ~ 27202811 (+)
G2313197 NA other downstream 776819 27493099 ~ 27493735 (+)

Expression


Co-expression Network