LOC110488189


Basic Information

Item Value
gene id LOC110488189
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 26747942 ~ 26750163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560292.2
TTGCAGGTTCAGGCAATAAATACACTCCCAGCTAGTATGGCAACTAAGCAAGGCAGTAAGTCACAGTGGGCTTAAGGTTTCAACTTGGCAACGATAGTGGTGGCTTGTCTGTTGGTACTTAGATATGGCTTTTGGAATTAATTTGTGGATCGTGTTGCTTTGCTCCATATTCTCAGAACATTTAAGATCTGCTTGTGCTCCACATGATGCCCAGCGATTAAGAGGCTACATGTATTCTGGCTCTTCCCAAGTGGAAGATGAACAGAAACAACCAGGTGATGGCTATCCTCAGGATCCAATCAAACCAACTTTTAGTACTTCAGGATCTGTCCAGAGTGATGCTACTCCCAGAGAGACTGGCCCCAACACCCATAACCAGGAACTATCCCGCAGAGGCTCTGCTTCAAGCTCTATCCAGCCTGCCCCAAGAATGTTAGGCCTCTCTGGCTCTATAGCCAGTAGAACCTCTGTCAGCCACAACAAGCGTCACACCCGTGCCAGTATAACTTCAGGCCAAAGTGTCACCAACCCTAGTGCAGTGAAGATGGTTTCAAGTTGGGAAGCAAAGGGAATCCAGCCCAAAACCTTTCCATTACAGCCTCGTTCAAGCAACTCTGGATCTGTTCAGAATTTCCTGGGAAGCCATTTATTCAAAGCAACCTCCCAGAATTCTGTGGCACAAAGTGGAATCTACCAGTCCGTAAGGGAAGTGGCTTCCACCCCTTACCTTCAAGTTCCCTCACGTGGTTCTTCAGGAACTTCATTTAGACCAGGTCCTCTGCATTTTGGGTCTACTGAAGGTGGGAGTGCAACAAATGCGTACAAGCCCAGCTTCTCTCAATATGTCAAGCCATACCAGAGTAGATATGCCTCCGCCAGTAGTGGTTCAACTTCTAGTCAATATGCCCAGAGTATAGATGGTGCCTCCAAAAGCAGCAGTATCCCTATACTTAGCCTGGGGTCTAGCTCCAGTCTCTTTACCCCGAGTTCTACGCCTAGTAAAAACTCCTATGGAACCTACAAGCCTGGCTCTACCCTTGGTGCAACACCACGCCAGAGCATGTTTACCTCTAACCAGGGTGGCAGTGCTTCAGTCTACAGCCAGAATGTCCTTGCCGCCAACCAGAAGCCAAGTAGCACTACACCTGCCGACAGCAACCACAGGCAAGTCTCTGGTCAGGTGGGGGACTACCAGCCTAGCTATGTTGCCAGTAGTGGGCCAATCTCCATCCTCTACAGTTCTAACCAGGGTGGCAGTGCTTCAACCTACAGCCAGAATGTCCTTGCTGCCAACCAGAAGCCAAGTAGCACTACACCTGCCGACAGCAACCACAGGCAAGTCTCTGGTCAGGTGGGGGACTACCAGCCTAGCTATGTTGCCAGTAGTGGGCCAATCTCCATCCTCTACAGTTCTGCCCAGGCTGGCAGTTCTTCAACCTATGTCCAGAAACCAAGCACCTCTAAACCTGCCCCCAGTCAAAGCTATCAGCGCAGCTATACTCCCAATGCTGTGAAGTCAATCCCTAGCTATGCCAGAGGACCTACCCAGAGCAGTACCACCACACCTCAAAGTGTTGTTCTGGTCTACATCTACAACATCCCAGCACGCTATGGTGGCACTCATATCCGTCGGCTCAAAGACCTGAGTCATAGTGGGCATAGTGCCTACACTAGCCACTCCAAAACCAGCGCAAGTGTTAACAAGCCACAGCAAAACCACACTCCACCTGCCAAACAGGAGGGTCCCAGCACTCCCTACGTCCAAGTCTCACACTCTACTAGATGGGAGCCCAGAACATGACTAAGTGAGAGCTGTAACCACCAGTTGAGGTGCTGAGACCATGAAGTGATGCCAGGCGCTGTACTTCAATGGTTTTAATAAATAATGTTGAATCTTA

Function

NR:

description
uncharacterized serine-rich protein C215.13-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560292.2 True 1898 mRNA 0.50 4 26747942 26750163

Neighbor

gene id symbol gene type direction distance location
LOC110488188 LOC106570251 coding upstream 31662 26714111 ~ 26716280 (+)
LOC110488183 LOC106570248 coding upstream 238877 26496331 ~ 26509065 (+)
LOC110488181 LOC106570268 coding upstream 483908 26221688 ~ 26264034 (+)
LOC110488180 LOC106570254 coding upstream 570984 26172338 ~ 26176958 (+)
LOC110488179 LOC106570255 coding upstream 580589 26124479 ~ 26167353 (+)
LOC110488192 LOC106570240 coding downstream 51876 26802039 ~ 26810237 (+)
LOC110488193 LOC106570239 coding downstream 66235 26816398 ~ 26820899 (+)
LOC110489414 trappc9 coding downstream 77873 26828036 ~ 27116229 (+)
LOC110488194 LOC106570237 coding downstream 390859 27141022 ~ 27183286 (+)
LOC118946485 LOC106570234 coding downstream 447687 27197844 ~ 27202811 (+)
G2312761 NA non-coding upstream 879 26746795 ~ 26747063 (+)
G2312739 nudc non-coding upstream 35060 26711484 ~ 26712882 (+)
G2312741 NA non-coding upstream 39551 26707275 ~ 26708391 (+)
G2312691 NA non-coding upstream 115651 26627469 ~ 26632291 (+)
G2312664 NA non-coding upstream 159173 26588465 ~ 26588769 (+)
G2312770 NA non-coding downstream 8456 26758619 ~ 26758826 (+)
G2312773 tpbg non-coding downstream 13528 26763691 ~ 26764603 (+)
G2312759 NA non-coding downstream 15644 26765807 ~ 26769740 (+)
G2312760 NA non-coding downstream 19740 26769903 ~ 26772129 (+)
G2312783 NA non-coding downstream 37320 26787483 ~ 26787773 (+)
G2312752 NA other upstream 14297 26733304 ~ 26733645 (+)
G2312300 NA other upstream 422559 26325152 ~ 26325383 (+)
G2311978 NA other upstream 828142 25919152 ~ 25919800 (+)
G2311528 NA other upstream 1011095 25735194 ~ 25736847 (+)
LOC110488142 LOC106570295 other upstream 2590506 24151527 ~ 24157473 (+)
G2312933 NA other downstream 283636 27033799 ~ 27039185 (+)
G2313197 NA other downstream 742936 27493099 ~ 27493735 (+)
kcng2 LOC106570224 other downstream 1293792 28016566 ~ 28047334 (+)

Expression


Co-expression Network