LOC110488190 (tpbg)


Basic Information

Item Value
gene id LOC110488190
gene name tpbg
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 26761125 ~ 26764690 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560293.2
GTGGGAGGACAGAAAGGCTCCGGACGGGGTGAGAGGGAAGCTGAAAAGCCCCTCCCCGCAGATTGTAGCCTACGATGCGATGGTGCTTTAATTTCATTGTTTGAGAGGAGCGACGCTCGGTGTGCATCTGCTGGGATCAAACAGCCCCGAAAGAGAGATCCCCTTTTGTCATGGAAATCAGACCCTGACTCTGTCACACGTGGGCTTCAGAAATGCTAAGAAGTTGAACATCCAGCCAGGACTTGTAATACAGAATAGAACGGGTCAAGGAGATGGCGAGGACAATCTGACCAGTGTACGATAGGACTCTCTCTCCACGTTTCACTCTCATCGGCAGtaggatatatatatttatatatagctAATGTGCACAGTCAATGCGCTGTAGTCTACAGcatattcattttttttgtcGCGCTTAGAAGTAGGCAAGAAGGTTGAGTTTTTTATTCTTCTGAAATGGCAATCAAGTCATTTTCGGTAAATGTAATTCGCTCTGTATAGAATACTTTTTTGTTTTCAATGTATAGAAACTATATTTATCACTGTTCTGGTATCGCGTAGCCTGTTTTTCAAAAATGCTGGATATGGTTCTACGGATGGTTTTCTGTGCGCTGCTCTGTTCTATTTCTGCGCGCGCATCCGGGTGCCCTCTTCGTTGTGAATGCTCGGAAGCTGCTCACACGGTGAAGTGTGTTTCCAAAGACTTGCGGAGTGTCCCGCCTGGGATACCAGGGTACACGAGGAATCTGTTCATAACTGGAAACCAGATCAGCAGAATTGGACCGGAATCATTCAAAGGGCTGGACAATATAACAACGCTGTCACTGAGTAACAATAGGATAACAGAGGTAGAGTCTCAGACTTTCTCTGGGCTGCGTTCCCTCCGCTCTCTGGACCTGAGCTCCAACCAGCTGGCTGTCATCAACCCAGAGGCCTTCACTGTTCCGGGCCACACTCTCAGGGAGCTCAACCTCAGCCGAGCTCTCTACAACCACTCCTCTCTCATGAACCTGGCTATGTCTCTTCGCTGGTCCACCCTGGTTGAGCTCCGGACCCTGGACCTGTCAGGGAACAGGCTAATCTACCTGCCCTCTCACACCTTCTCCTACCTGGGGGGCCTGCGGAGGCTCATCCTGGCCAACAACTCCCTGGTGGCCCTCTACAATGGCACCTTCTCTGGGCTGGACTCTCTGGAGCAGCTGGATCTGACCCTTAACGCTCTGCGGACTGTCCAGGAGGAGGGCCTGGCTGAGCTGGCCTCTCTGCCCCCCGGGGTGAGACTCCTTCTAGGGGAGAACCCCTGGACCTGTATCTGTGGCATGGAGCCCTTCGCTGCCTGGCTCAACTCCTCCCAGGGACATGTGGGAGACGCAGAGGGCCTGGTGTGTGCCTTCccctcagacatgagaaacaccTCTCTGCTGAGGTTGGCGGCTAGACACGCTGGGGGGGACGGGGTGGCGCTGGGATGCCACAGGGTGGGTGAGGGGGCGGACCTGGCCCTCCAGACTTCCTACGTGTTCCTTGGGATCGTCCTGGGCTTCGTGGGACTCGTCTTCCTCTTGGTCCTCTACCTCAACCGGCAGGGCATCAAGAAGAGGATCAATGACATGAGGGAAGCGTGCACGGAGGTGTTGGAGGGATACCACTACCGCTACGAGCACGACGCCGACCCCAGGCTCTCACAGGTCTCCACCACAGCAGACATTTGATGGTAGGAGGACACTCCCAGGGGCTTCCATGATCCTTCTTTCAtaatcaaaaacatttttttctatTGCATTTATAAGTAGATAAGATCATGTAAAAACTGTACATGTGAATTGTATGTAAATATaaacatacagtaagtatatgACTGAGTATTATTATTGTTCCTAGTAGCCTTGTCCATGATTAAAGCATGCACTGTCTGATCTGTAGTCCTTCACAACCAGTCCTCACTTTCAGTCCACACATCGTCTCAGACTGGGGATTACCCATGGCTAACAAATGGGCGTTGACTGTGAAAGAGAACTGTTGTATGGATgggggactgactgactgttctTCTACATAGATTTCCCCCTCTTAAAAGTGGGGCTTCTCTGTCTGTCCTAGAATGAAGTGTCATGTGAAGGAGTGAAACTACATTTGGACAATATCATTGATGTATGTTATGATTCTTGGAACTGAGAACAGATATGGATGAATATACATAATTCATGAAGCTGAAGTAATGAAACTGAAGACTGTTCTTATACATTTCACTTGCTATGACTTTACTTAAGTATTGTTCTTTGAGAGGAGGTCTTGTAAATGTATATACTATCGCTACCAAGCTCACATACAGCATAATTCATCAGCTCATGAGTTGCAAGTTGTGTGACACCAACCCCTGTGAAGCTTATGCACAATGATCATGTCTGaaattgcaccatattccctgtatttgccctgggcaaaagtagtggacttataaagggaatagggtgccattgggacgCAGAGTTCAATGAGAGATTGTCTGAGGGCCAGCTCACCCCAGGACTGAGGAGCATTTCGTTGGTCTTCTATCCCTCTGCCCCAGGGTGCCTGAAAGGAATCCCAGCAGATTAGTCTCCATAGCATTCCAAAGGGAGGAGAACCTCTCCTCTAATCTCTCCTAAAAgcaactctgtctctctctcaattcaaagggctgtattggcatgggaaacatatgtttacattgccaaagcaagtgaaatacataataaacaaaagtgaaaataaacaaatcagaaatgaacagtaaacattactcacaaatgtttcaaaggaatagagacatttcaaatgtcatattattgcTATGTACAGTATTGTAACGATGTTTAAATAGTTAaagggaaaaaataaataatcgtaacat

Function

symbol description
tpbg Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within several processes, including dendrite arborization; olfactory learning; and positive regulation of intracellular signal transduction. Located in cell surface.

NR:

description
trophoblast glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560293.2 True 2896 mRNA 0.47 2 26761125 26764690
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110488187 LOC106570243 coding downstream 15809 26716779 ~ 26745316 (-)
LOC110488186 nudc coding downstream 48239 26705216 ~ 26712886 (-)
ntl ntl coding downstream 73336 26683979 ~ 26687789 (-)
LOC110488185 LOC106570245 coding downstream 99247 26594098 ~ 26661878 (-)
zdhhc18b LOC106570247 coding downstream 177784 26575447 ~ 26583341 (-)
LOC110488191 LOC106570241 coding upstream 5739 26770429 ~ 26782835 (-)
LOC110488196 LOC106570217 coding upstream 512770 27277460 ~ 27313076 (-)
LOC110489416 LOC106570219 coding upstream 735299 27499989 ~ 27653164 (-)
LOC110488201 LOC106570223 coding upstream 1099076 27863766 ~ 27871393 (-)
slc66a2 pqlc1 coding upstream 1292108 28056798 ~ 28082963 (-)
G2313836 NA non-coding downstream 30393 26727570 ~ 26730732 (-)
G2313825 NA non-coding downstream 56661 26704205 ~ 26704464 (-)
G2313807 NA non-coding downstream 91218 26669694 ~ 26669907 (-)
G2313765 NA non-coding downstream 172359 26588470 ~ 26588766 (-)
G2313764 NA non-coding downstream 173074 26587681 ~ 26588051 (-)
G2313864 NA non-coding upstream 28436 26793126 ~ 26793558 (-)
G2313869 NA non-coding upstream 32450 26797140 ~ 26823594 (-)
G2313878 LOC106570239 non-coding upstream 51455 26816145 ~ 26820865 (-)
G2313949 NA non-coding upstream 189429 26954119 ~ 26955459 (-)
G2314006 NA non-coding upstream 349960 27114650 ~ 27116172 (-)
G2313729 NA other downstream 236516 26524244 ~ 26524609 (-)
G2312079 LOC106582599 other downstream 791764 25968983 ~ 25969361 (-)
G2311141 NA other downstream 1597995 25162692 ~ 25163130 (-)
umad1 LOC106588684 other downstream 2781872 23962314 ~ 23979279 (-)
G2310415 NA other downstream 2943119 23816297 ~ 23818006 (-)
LOC110488229 LOC106570201 other upstream 2529566 29283078 ~ 29318812 (-)
G2316235 NA other upstream 2733240 29497930 ~ 29500245 (-)
G2316696 NA other upstream 3269608 30034298 ~ 30039597 (-)
G2318269 NA other upstream 4370817 31135507 ~ 31135959 (-)
LOC110488289 LOC106569889 other upstream 4558698 31323368 ~ 31334791 (-)

Expression

LOC110488190(tpbg) Expression in all Baseline Samples

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LOC110488190(tpbg) Expression in each Bioproject

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LOC110488190(tpbg) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network