LOC110488192 (LOC106570240)


Basic Information

Item Value
gene id LOC110488192
gene name LOC106570240
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 26802039 ~ 26810237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560296.2
CAATCAGGTTTAATATGCAGGCAATACTGAGTTACCGAACTGCAGACACAAATAGGATAGGGCAGTTTTTAAAAACCTGATTGTGTAGCCCACCTCAAATGCTTTTGCTGATAATACAGAATATTACATATTTGAAATGAAAGGCACCAAGACCCATAGACATATAACCCCTCTAACATTTGAATAATGCTGTCAGTGCTATGCCATTGACATTGCTTCTCCTTGTTTGAAATAGGTTAAACACACAGGCAGGAAAGTTTTCGTTCCATGATACCACGTTCTGGACACATCCATGCGAAAGAATGTCCCTGATGAGCCCATGTTCTggagtttttgttgttgtatttgcgGCGTTTTATACCATTGGGACTTAAATGAAATTGTACATTTAGACTCCACGTAGAAGCTATACAGCAGGCTAAAATCTAGGCCACTTcgtttttgatgtatttcaacTGGAGTTCTCATTTTTTCTTTTTCCGGCTTAAGAGGGTGTGGTTTTTCAGAAAGTAATTTCGTCAGTATTTTGTGCCTCGGTATTCTTCTCTCGAAAccaacaggttataggctactaCTGTGTTAACCTATTGAAACAATTTCACCAGCATGTGAAACAGAGAGCAATCTAAACTTGACTAAAAACAGTTACATGGTGACTCTTCTGAAAGGCATGACGGACAGTTCGCAGTCAATCAGACGTCCAACCCAAAGTTTCCCGTAGCCAAGATAAATACCATATTTCTTCTCTGTCCTCTGCTGCTAACCACCGCCTACTTACTTGCCATTGGACAACTCCTGTTCATATTGGACACACATCTGTTGCATTCCAGTATATGAGTGGATGACAAGGCTGACACCGGTCGGGGAGGCGTGACGACCGATGACTGTCGGAGGGGCACAGGGACCGAGACAGTCGGACGATCATCACATCTTGAAGGTGAAAGAACCTGCCGACTGTCCTGCTGCTGTGCGTCTTCAGGAGCCGTCTGGTGTAGTCTAATAAAGTAGGTCTACAGCAGCAGCCTTGAAGAGGAAGAACCACATGCATTGTTGCCAGTCTCCTGAAGCTGTCCAGTCAGCAACAACAACAGTCCCCCCGTCAAACTATCCCTCATGGCAACGATCGCCATGGAGCGGATTGGGCGTCTGTTCATCAACCTCCAGCAGGTAAGGGCGTTGCCCCAGATGCTGACAGAGGCCGCCCCCTCCATGCCAGGCACGCTACGGGACACCGAAGTTCCCGGATTCTTCAGAGAGCGCTATATCCACGCTGGCTACCGACCGCTCCACCAGGGCTGGAGGTACTACTTCCTGTCGCTGTTCCAGCGTCACAACGAGACCATCAACGTGTGGACCCACCTGCTAGGGTCTCTCCTGGTCCTGGTCAAGTTCCTACAGCTAGCTGAGACGGTGGACTTCATCGATGACGCCCACGCCTGGCCCCTCCTCATTCTCCTGCTGTCCTCCCTGGCCTACATGGCCTGCAGCACGGTAGCCCACCTCCTGGCTGCCAAATCAGAGTTCTACCACTACTGCTTCTTCTTCCTGGATTATGTAGGAGTGGCTCAGTATCAGTACGGCAGCGCCGTGGCTCACTTCTACTATGCTGTGGAACCAAACTACCACCAGTGGGTCTCCCCAGTCTTCATGCCCACTGCCACCTTCCTCTGCTGCCTGTCCTGCCTGGGCTGCTGCTATGGGAAGTATCGCAACTACAGCCTGCGGGTCTGGGTCCGGAAGGTGGGCCAGGTGATTCCCTCGGCTATGGCCTATGCCTGGGATACTAGTCCGGTGTTCCACCGCCTCCTCCAGTCCCTCTGGACCACGTCGCACAGTGATGACATCGCTGCCCCCGCCAGTGGCATAGTCGGCGACCCGGCTATATCCTTCCATGGGAGCCAGGTAGCCTTCTTCCTGTCCAGTGCGTTCTTCTTCACCAACCCCCTCCCAGAGCGTCTGTTCCCAGGCCACTGTGACTTCCTGGGGCAGGGCCACCAGCTGTTCCACGTCTTCCTGGTTATCTGTACTCTCTGTCAGATCCAGGCCTCTCACCTGGACTACCTGGGCCGACGGCCACTCTACACACAGCTACACGGAGAGGGAGCATCCACTGTCTATCTGGTGCAGTATGGAGCCACGCTGGTGGCCTGTGTCTGCATAGCAGTCTTCATTGCAAGGAAAGCAAAACGGTTGCTTAACTGCAGAGACAAGTCCAAATGAACTGGGTAGGTCACTGTGTAGGAGACTTACAATCACTTCCCTgtgggcaaaactggttgaaattaGTTGACGTTATTACAGCCAAAAACTTTTGCCCAGTTTTGCCTGCTGGGTTGGTACCAAAGTGATCAATGTGGCCTTGTTCGACTCGACACACACTGCCTTCCTTAGCCGGCTCGAGTTTGCTTCTATAATATAATGTTTCTCTACAGCACTTGTGTCCTTGACGATGACAGAAGTATTCCTATAGCAGTATGTCTAATCATGTCTCAATGCTTTTGTTACATTTGTGCTAGTTTTGTtccattatgtttttttttttttacaacaacgTATGTCTAACTACTGCCAAGAAACATTGAGTCCTTGTCAGCACTCAAACAATGAAATGAATtgatcttaaagggatagtttattCACTTTCAAAGTAGTATTATGTTGGAAAAGGGAGCATACTGTGTAGTGGGTGTGGTTCTGAATATCAACAATACTGCTAACTATGCTTTTTATACGAGTTTCACATTTTAATGCCAGGCCGATCAATCTATCCACGTCTAGAGCACTTTTATAGGCAGACAAATTGACTTACCCACATTGCACTTTTTCACCTATGAGAGTATAAACTGAGTATTTCTCATGTGGGGTCACAAATCAAGGCTGTACTGGACCAATTGCTGAGAAAGTGTATTAATGAATCCGTCAATGTAAACCTTATGTAAGATTAGACATgcatgtacagtggcaagaaaattaggtgaaccctttggaattacctggatttcaaTTTGATCTTcttctaagtcacaacaatagacaaacacagtctgcttaaactaacacacaaatgattgtatttttcttgtctatattgaacacataatttaaacattgagggtaggttggaaaaagtacaTTAATCCCTAGGCTAATGAcctctccaaaagctaattggagtcaggagtcagctaacctggagtccaatcaatgagatgagattggagatgttagtTAGAGCTGCCTAGCCCTATTAAAAAAGAGTTTGCTGTTCACAAGAACCATTGCCttatgtgaaccatgccttgttACCAACGTATctttaaaagccttgatgttcatcagtccacagtaagacaaattgtctataaatggagaaggttcaacactgttgctactctccctaggagtggccgtaagggaaagatgactgcaag
>XM_021560297.2
CAATCAGGTTTAATATGCAGGCAATACTGAGTTACCGAACTGCAGACACAAATAGGATAGGGCAGTTTTTAAAAACCTGATTGTGTAGCCCACCTCAAATGCTTTTGCTGATAATACAGAATATTACATATTTGAAATGAAAGGCACCAAGACCCATAGACATATAACCCCTCTAACATTTGAATAATGCTGTCAGTGCTATGCCATTGACATTGCTTCTCCTTGTTTGAAATAGGTTAAACACACAGGCAGGAAAGTTTTCGTTCCATGATACCACGTTCTGGACACATCCATGCGAAAGAATGTCCCTGATGAGCCCATGTTCTggagtttttgttgttgtatttgcgGCGTTTTATACCATTGGGACTTAAATGAAATTGTACATTTAGACTCCACGTAGAAGCTATACAGCAGGCTAAAATCTAGGCCACTTcgtttttgatgtatttcaacTGGAGTTCTCATTTTTTCTTTTTCCGGCTTAAGAGGGTGTGGTTTTTCAGAAAGTAATTTCGTCAGTATTTTGTGCCTCGGTATTCTTCTCTCGAAAccaacaggttataggctactaCTGTGTTAACCTATTGAAACAATTTCACCAGCATGTGAAACAGAGAGCAATCTAAACTTGACTAAAAACAGTTACATGGTGACTCTTCTGAAAGGCATGACGGACAGTTCGCAGTCAATCAGACGTCCAACCCAAAGTTTCCCGTAGCCAAGATAAATACCATATTTCTTCTCTGTCCTCTGCTGCTAACCACCGCCTACTTACTTGCCATTGGACAACTCCTGTTCATATTGGACACACATCTGTTGCATTCCAGTATATGAGTGGATGACAAGGCTGACACCGGTCGGGGAGGCGTGACGACCGATGACTGTCGGAGGGGCACAGGGACCGAGACAGTCGGACGATCATCACATCTTGAAGGTGAAAGAACCTGCCGACTGTCCTGCTGCTGTGCGTCTTCAGGAGCCGTCTGGTGTAGTCTAATAAATTGCCAGTCTCCTGAAGCTGTCCAGTCAGCAACAACAACAGTCCCCCCGTCAAACTATCCCTCATGGCAACGATCGCCATGGAGCGGATTGGGCGTCTGTTCATCAACCTCCAGCAGGTAAGGGCGTTGCCCCAGATGCTGACAGAGGCCGCCCCCTCCATGCCAGGCACGCTACGGGACACCGAAGTTCCCGGATTCTTCAGAGAGCGCTATATCCACGCTGGCTACCGACCGCTCCACCAGGGCTGGAGGTACTACTTCCTGTCGCTGTTCCAGCGTCACAACGAGACCATCAACGTGTGGACCCACCTGCTAGGGTCTCTCCTGGTCCTGGTCAAGTTCCTACAGCTAGCTGAGACGGTGGACTTCATCGATGACGCCCACGCCTGGCCCCTCCTCATTCTCCTGCTGTCCTCCCTGGCCTACATGGCCTGCAGCACGGTAGCCCACCTCCTGGCTGCCAAATCAGAGTTCTACCACTACTGCTTCTTCTTCCTGGATTATGTAGGAGTGGCTCAGTATCAGTACGGCAGCGCCGTGGCTCACTTCTACTATGCTGTGGAACCAAACTACCACCAGTGGGTCTCCCCAGTCTTCATGCCCACTGCCACCTTCCTCTGCTGCCTGTCCTGCCTGGGCTGCTGCTATGGGAAGTATCGCAACTACAGCCTGCGGGTCTGGGTCCGGAAGGTGGGCCAGGTGATTCCCTCGGCTATGGCCTATGCCTGGGATACTAGTCCGGTGTTCCACCGCCTCCTCCAGTCCCTCTGGACCACGTCGCACAGTGATGACATCGCTGCCCCCGCCAGTGGCATAGTCGGCGACCCGGCTATATCCTTCCATGGGAGCCAGGTAGCCTTCTTCCTGTCCAGTGCGTTCTTCTTCACCAACCCCCTCCCAGAGCGTCTGTTCCCAGGCCACTGTGACTTCCTGGGGCAGGGCCACCAGCTGTTCCACGTCTTCCTGGTTATCTGTACTCTCTGTCAGATCCAGGCCTCTCACCTGGACTACCTGGGCCGACGGCCACTCTACACACAGCTACACGGAGAGGGAGCATCCACTGTCTATCTGGTGCAGTATGGAGCCACGCTGGTGGCCTGTGTCTGCATAGCAGTCTTCATTGCAAGGAAAGCAAAACGGTTGCTTAACTGCAGAGACAAGTCCAAATGAACTGGGTAGGTCACTGTGTAGGAGACTTACAATCACTTCCCTgtgggcaaaactggttgaaattaGTTGACGTTATTACAGCCAAAAACTTTTGCCCAGTTTTGCCTGCTGGGTTGGTACCAAAGTGATCAATGTGGCCTTGTTCGACTCGACACACACTGCCTTCCTTAGCCGGCTCGAGTTTGCTTCTATAATATAATGTTTCTCTACAGCACTTGTGTCCTTGACGATGACAGAAGTATTCCTATAGCAGTATGTCTAATCATGTCTCAATGCTTTTGTTACATTTGTGCTAGTTTTGTtccattatgtttttttttttttacaacaacgTATGTCTAACTACTGCCAAGAAACATTGAGTCCTTGTCAGCACTCAAACAATGAAATGAATtgatcttaaagggatagtttattCACTTTCAAAGTAGTATTATGTTGGAAAAGGGAGCATACTGTGTAGTGGGTGTGGTTCTGAATATCAACAATACTGCTAACTATGCTTTTTATACGAGTTTCACATTTTAATGCCAGGCCGATCAATCTATCCACGTCTAGAGCACTTTTATAGGCAGACAAATTGACTTACCCACATTGCACTTTTTCACCTATGAGAGTATAAACTGAGTATTTCTCATGTGGGGTCACAAATCAAGGCTGTACTGGACCAATTGCTGAGAAAGTGTATTAATGAATCCGTCAATGTAAACCTTATGTAAGATTAGACATgcatgtacagtggcaagaaaattaggtgaaccctttggaattacctggatttcaaTTTGATCTTcttctaagtcacaacaatagacaaacacagtctgcttaaactaacacacaaatgattgtatttttcttgtctatattgaacacataatttaaacattgagggtaggttggaaaaagtacaTTAATCCCTAGGCTAATGAcctctccaaaagctaattggagtcaggagtcagctaacctggagtccaatcaatgagatgagattggagatgttagtTAGAGCTGCCTAGCCCTATTAAAAAAGAGTTTGCTGTTCACAAGAACCATTGCCttatgtgaaccatgccttgttACCAACGTATctttaaaagccttgatgttcatcagtccacagtaagacaaattgtctataaatggagaaggttcaacactgttgctactctccctaggagtggccgtaagggaaagatgactgcaag
>XM_021560298.2
CAATCAGGTTTAATATGCAGGCAATACTGAGTTACCGAACTGCAGACACAAATAGGATAGGGCAGTTTTTAAAAACCTGATTGTGTAGCCCACCTCAAATGCTTTTGCTGATAATACAGAATATTACATATTTGAAATGAAAGGCACCAAGACCCATAGACATATAACCCCTCTAACATTTGAATAATGCTGTCAGTGCTATGCCATTGACATTGCTTCTCCTTGTTTGAAATAGGTTAAACACACAGGCAGGAAAGTTTTCGTTCCATGATACCACGTTCTGGACACATCCATGCGAAAGAATGTCCCTGATGAGCCCATGTTCTggagtttttgttgttgtatttgcgGCGTTTTATACCATTGGGACTTAAATGAAATTGTACATTTAGACTCCACGTAGAAGCTATACAGCAGGCTAAAATCTAGGCCACTTcgtttttgatgtatttcaacTGGAGTTCTCATTTTTTCTTTTTCCGGCTTAAGAGGGTGTGGTTTTTCAGAAAGTAATTTCGTCAGTATTTTGTGCCTCGGTATTCTTCTCTCGAAAccaacaggttataggctactaCTGTGTTAACCTATTGAAACAATTTCACCAGCATGTGAAACAGAGAGCAATCTAAACTTGACTAAAAACAGTTACATGGTGACTCTTCTGAAAGGCATGACGGACAGTTCGCAGTCAATCAGACGTCCAACCCAAAGTTTCCCGTAGCCAAGATAAATACCATATTTCTTCTCTGTCCTCTGCTGCTAACCACCGCCTACTTACTTGCCATTGGACAACTCCTGTTCATATTGGACACACATCTGTTGCATTCCAGTATATGAGTGGATGACAAGGCTGACACCGGTCGGGGAGGCGTGACGACCGATGACTGTCGGAGGGGCACAGGGACCGAGACAGTCGGACGATCATCACATCTTGAAGTTGCCAGTCTCCTGAAGCTGTCCAGTCAGCAACAACAACAGTCCCCCCGTCAAACTATCCCTCATGGCAACGATCGCCATGGAGCGGATTGGGCGTCTGTTCATCAACCTCCAGCAGGTAAGGGCGTTGCCCCAGATGCTGACAGAGGCCGCCCCCTCCATGCCAGGCACGCTACGGGACACCGAAGTTCCCGGATTCTTCAGAGAGCGCTATATCCACGCTGGCTACCGACCGCTCCACCAGGGCTGGAGGTACTACTTCCTGTCGCTGTTCCAGCGTCACAACGAGACCATCAACGTGTGGACCCACCTGCTAGGGTCTCTCCTGGTCCTGGTCAAGTTCCTACAGCTAGCTGAGACGGTGGACTTCATCGATGACGCCCACGCCTGGCCCCTCCTCATTCTCCTGCTGTCCTCCCTGGCCTACATGGCCTGCAGCACGGTAGCCCACCTCCTGGCTGCCAAATCAGAGTTCTACCACTACTGCTTCTTCTTCCTGGATTATGTAGGAGTGGCTCAGTATCAGTACGGCAGCGCCGTGGCTCACTTCTACTATGCTGTGGAACCAAACTACCACCAGTGGGTCTCCCCAGTCTTCATGCCCACTGCCACCTTCCTCTGCTGCCTGTCCTGCCTGGGCTGCTGCTATGGGAAGTATCGCAACTACAGCCTGCGGGTCTGGGTCCGGAAGGTGGGCCAGGTGATTCCCTCGGCTATGGCCTATGCCTGGGATACTAGTCCGGTGTTCCACCGCCTCCTCCAGTCCCTCTGGACCACGTCGCACAGTGATGACATCGCTGCCCCCGCCAGTGGCATAGTCGGCGACCCGGCTATATCCTTCCATGGGAGCCAGGTAGCCTTCTTCCTGTCCAGTGCGTTCTTCTTCACCAACCCCCTCCCAGAGCGTCTGTTCCCAGGCCACTGTGACTTCCTGGGGCAGGGCCACCAGCTGTTCCACGTCTTCCTGGTTATCTGTACTCTCTGTCAGATCCAGGCCTCTCACCTGGACTACCTGGGCCGACGGCCACTCTACACACAGCTACACGGAGAGGGAGCATCCACTGTCTATCTGGTGCAGTATGGAGCCACGCTGGTGGCCTGTGTCTGCATAGCAGTCTTCATTGCAAGGAAAGCAAAACGGTTGCTTAACTGCAGAGACAAGTCCAAATGAACTGGGTAGGTCACTGTGTAGGAGACTTACAATCACTTCCCTgtgggcaaaactggttgaaattaGTTGACGTTATTACAGCCAAAAACTTTTGCCCAGTTTTGCCTGCTGGGTTGGTACCAAAGTGATCAATGTGGCCTTGTTCGACTCGACACACACTGCCTTCCTTAGCCGGCTCGAGTTTGCTTCTATAATATAATGTTTCTCTACAGCACTTGTGTCCTTGACGATGACAGAAGTATTCCTATAGCAGTATGTCTAATCATGTCTCAATGCTTTTGTTACATTTGTGCTAGTTTTGTtccattatgtttttttttttttacaacaacgTATGTCTAACTACTGCCAAGAAACATTGAGTCCTTGTCAGCACTCAAACAATGAAATGAATtgatcttaaagggatagtttattCACTTTCAAAGTAGTATTATGTTGGAAAAGGGAGCATACTGTGTAGTGGGTGTGGTTCTGAATATCAACAATACTGCTAACTATGCTTTTTATACGAGTTTCACATTTTAATGCCAGGCCGATCAATCTATCCACGTCTAGAGCACTTTTATAGGCAGACAAATTGACTTACCCACATTGCACTTTTTCACCTATGAGAGTATAAACTGAGTATTTCTCATGTGGGGTCACAAATCAAGGCTGTACTGGACCAATTGCTGAGAAAGTGTATTAATGAATCCGTCAATGTAAACCTTATGTAAGATTAGACATgcatgtacagtggcaagaaaattaggtgaaccctttggaattacctggatttcaaTTTGATCTTcttctaagtcacaacaatagacaaacacagtctgcttaaactaacacacaaatgattgtatttttcttgtctatattgaacacataatttaaacattgagggtaggttggaaaaagtacaTTAATCCCTAGGCTAATGAcctctccaaaagctaattggagtcaggagtcagctaacctggagtccaatcaatgagatgagattggagatgttagtTAGAGCTGCCTAGCCCTATTAAAAAAGAGTTTGCTGTTCACAAGAACCATTGCCttatgtgaaccatgccttgttACCAACGTATctttaaaagccttgatgttcatcagtccacagtaagacaaattgtctataaatggagaaggttcaacactgttgctactctccctaggagtggccgtaagggaaagatgactgcaag

Function

NR:

description
membrane progestin receptor alpha-B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560296.2 False 3431 mRNA 0.47 3 26802039 26810237
XM_021560297.2 False 3385 mRNA 0.47 3 26802039 26810237
XM_021560298.2 True 3318 mRNA 0.47 3 26802039 26810237

Neighbor

gene id symbol gene type direction distance location
LOC110488189 NA coding upstream 51876 26747942 ~ 26750163 (+)
LOC110488188 LOC106570251 coding upstream 85759 26714111 ~ 26716280 (+)
LOC110488183 LOC106570248 coding upstream 292974 26496331 ~ 26509065 (+)
LOC110488181 LOC106570268 coding upstream 538005 26221688 ~ 26264034 (+)
LOC110488180 LOC106570254 coding upstream 625081 26172338 ~ 26176958 (+)
LOC110488193 LOC106570239 coding downstream 6161 26816398 ~ 26820899 (+)
LOC110489414 trappc9 coding downstream 17799 26828036 ~ 27116229 (+)
LOC110488194 LOC106570237 coding downstream 330785 27141022 ~ 27183286 (+)
LOC118946485 LOC106570234 coding downstream 387613 27197844 ~ 27202811 (+)
LOC110488195 LOC106588620 coding downstream 393200 27203437 ~ 27276446 (+)
G2312784 NA non-coding upstream 12306 26789445 ~ 26789733 (+)
G2312783 NA non-coding upstream 14266 26787483 ~ 26787773 (+)
G2312760 NA non-coding upstream 29910 26769903 ~ 26772129 (+)
G2312759 NA non-coding upstream 32299 26765807 ~ 26769740 (+)
G2312773 tpbg non-coding upstream 37436 26763691 ~ 26764603 (+)
G2312816 NA non-coding downstream 34996 26845233 ~ 26845625 (+)
G2312905 NA non-coding downstream 176472 26986709 ~ 26987068 (+)
G2312909 NA non-coding downstream 179937 26990174 ~ 26991452 (+)
G2312911 NA non-coding downstream 184127 26994364 ~ 26994694 (+)
G2312927 NA non-coding downstream 217373 27027610 ~ 27028157 (+)
G2312752 NA other upstream 68394 26733304 ~ 26733645 (+)
G2312300 NA other upstream 476656 26325152 ~ 26325383 (+)
G2311978 NA other upstream 882239 25919152 ~ 25919800 (+)
G2311528 NA other upstream 1065192 25735194 ~ 25736847 (+)
LOC110488142 LOC106570295 other upstream 2644603 24151527 ~ 24157473 (+)
G2312933 NA other downstream 223562 27033799 ~ 27039185 (+)
G2313197 NA other downstream 682862 27493099 ~ 27493735 (+)
kcng2 LOC106570224 other downstream 1233718 28016566 ~ 28047334 (+)

Expression


Co-expression Network