LOC118946485 (LOC106570234)


Basic Information

Item Value
gene id LOC118946485
gene name LOC106570234
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 27197844 ~ 27202811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971324.1
CCTGCCTTCAACCCAGTGCTATACACAGCACAACAACAGCTTTTATTCATGGGCTCTCTCAGAGAAGAAATGATTCGGCAACAACTCAAGCAAGAGGAATTTGCCAAACCTGGCTTGCCCCGACCAGAAGACCTGCTGACCTCTCAGGCTAAAAATAGCATTATGCATCTCATCGGCCAGAAGCACCTGCTGGCGCCTAAAAACGTCTGTGATTCCAAGACACCTGTCCTCCATCTGTCAGCCACacagggaggggaagaggaggaagtggaggtgaTGGTGGGTCGGCTTATGCCAGAGTCTGCCATGCTGCCCACGCCGGGCCAGGAGGGCCCTGCCACCCAAAGGGACTCCTTGCTCCTGGTCAGgtCCAGGTCTCCCCTGCCTGGCTCGTCCcaggagaaggaggggaagaACCTGCCCCCGCGGCGGCCTCTGAAGCTGGCACCTCTGGAGCTGCCCAGGGAGGTACAGAAGGCACAGAGACAGAAGATTAAGCGGATTGGGCTGGAGGCCAAGGCTGCTGCCCATAAGCTGGACACGACGGTGGGCGACCAACCCTGCTCCAGGAAGGTGAAGGACTgtggggtgagaggagagggactagGACTGGTTAAAGGTACGGCAGAGTGTGTCTCCACCCCAGCCCCACATCCCTTACCTCTGAATGAAACAGTACCCAGGGTCCAGCGACATCAGAAGGTTAGGAGAGCGCAGCTAGCCCGTGCCAACCAAatccagagacagacaggagacaggctcTCGGAAGATGCTGGTATTAACGTTAAcggccctcctcctccccctatcAGCAAACcagcctctccctcttcctctctccccaccagCGCCAAAGCTCAGGTCCAGCAGGTGGTAGCACCACATGGCGAGGAGAGCTCATGCCAAGTGGCCGGCACATTCCAGCAGGATACCGGTGGGAGGAGGCTGCGTCTCAGGAGGGCAGAGCACCTCGAAGAAGATCAGAGCAAATCTAACATGTCAACAGTAGGATTACCTGGGGAAGAGGCCAAGCTGGCCCAAGGTGTCCAGCAAGGAAAAGCCCTGAGGGCAGAGAATACAGAGGAGGCTCTGAGAAAGCCCTGAAGCAGGCCAGTCACATACTGGAGAAGGCTTCCAGGAAGAACGCCAGGCCGGAATCACCGTAGAATCCGCTGAAAGTGTCCGGAAAGGTAACCCGGAGAACGGCAGAGAGAAATCGCCAGGACGCTGTcctttgacctctgacccctgatcTTTGACCTCTTAACCCCTGACTCCCTTTGACCAGACCAGGAAGTAGCGAAAACAGACTTGACAGTGTTAAGTCATGTGTTTACATGTGCTTATCACCTGGAGATTAAGGATAGAAAAGCCCCTGCATCTTACTTCACACAGCATCTGCTATTCAAAGCAACAAGCCAGTTACAATGCCAAGTCCCTGGcaggcagtatgtacagtatactgtacagagGATAAATATAGAAGTATATTATGGACCAAAAAcacatgtatttattattttataaaaAGATGATGCTCGTAATACATTACATTTAACCATTGTAGATATCCTGACATAGGCTATTCAATGTCATATTTTGGATGAAATATGTCTGCACATGCAGGTGACATAACCATATTTGAGCGTCCCAGTAGCTTGGTAAAGCTATGTGAAACTGACCTGCATTCAGGGATTATTATCAAGGTCTCATCAGATGGATACATTGGCTTCATCTATGACCACTGTTAACAGCTCCATCTAGTCCATAACAATGGCATCGAGTAGCAACAGAGCTCACAAACAGAGCCGCAGCAGTAATCGTGTGTTAAGATTGGCAACAGCAAATAAAGAGATTTGAAATATGCCTTCTTTTCTGAAAAAAGAAGGCCCTCACTTTGGGTACTGTGTATTTAGGCCTTCAGTTCATTCTATCATCTTTCTGCACCTTAGCTACTTCGTCAGGCGTGCAGTAGATTCCTGTAGTACATGCAATCTCAGAAGAATGTCTTTAATCAATGTTTTTCCTCCAATCAGCATGCAGTACAGCTCTACGTGTGTTTGGTAACAGAACAACGGCCATCCCTCACTGTAACAAGTGAAACACTCACAGAGACGATGTTACTCTAGTCTAGACATCCACGTTTTGAGGTGACCCATTTGTTTTCAATTTATTCCCTAAATCTAGAATGGATGTAGACATTCCAGACAGTAGTTATGGGAATGTGATTTaggtaatgtaatgtatgtttaTCATAGAGAAAAGAAGTCTCCTGAAACATGTGTGAGATTTCAAGTACAATTGTTTTCGCAGGTATGTCAAAATGAACTGACAGTGAGAAAACACATCCAAAACCATATCACAACCATTCTACATCCGAGCAAGTGAGTCGTATTAGGCAAGTCTCTCATTGACAGACTTGCAACACAAGAGGCTTCTAACACACTACTTTTTGCCTTGAGTCCCGCTGCATTCTGACAGTGAATTCATAAATTGTTTGAATATATATGTGAACCCTGCGGGAATTGAACCTACGACCAAAACCCTCAATGAGTCAGTCTGACACCAGTAGCACAGCAATGTCCatctgccccagaccatgacacgaCCACCAGACTTCCTGACCGTTTCACACCACGTAGTTAGGCTGGCCTATACTCACTTTCCCTGATTGACTGACTGCAAAGTTAATCACAAATAGGATCTCAGAATGTATAGCCATTATGTCCAATGTATGTATTTGTCAATGAcgtacaa
>TU2645715
CCATCCCCTGCCTTCAACCCAGTGCTATACACAGCACAACAACAGCTTTTATTCATGGGCTCTCTCAGAGAAGAAATGATTCGGCAACAACTCAAGCAAGAGGAATTTGCCAAACCTGGCTTGCCCCGACCAGAAGACCTGCTGACCTCTCAGGCTAAAAATAGCATTATGCATCTCATCGGCCAGAAGCACCTGCTGGCGCCTAAAAACGTCTGTGATTCCAAGACACCTGTCCTCCATCTGTCAGCCACacagggaggggaagaggaggaagtggaggtgaTGGTGGGTCGGCTTATGCCAGAGTCTGCCATGCTGCCCACGCCGGGCCAGGAGGGCCCTGCCACCCAAAGGGACTCCTTGCTCCTGGTCAGGTATGTATCATGTAAACATTTGTTAATTCATTCATGCAATCgttaatttgtttgtttgtttgttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttcaggtCCAGGTCTCCCCTGCCTGGCTCGTCCcaggagaaggaggggaagaACCTGCCCCCGCGGCGGCCTCTGAAGCTGGCACCTCTGGAGCTGCCCAGGGAGGTACAGAAGGCACAGAGACAGAAGATTAAGCGGATTGGGCTGGAGGCCAAGGCTGCTGCCCATAAGCTGGACACGACGGTGGGCGACCAACCCTGCTCCAGGAAGGTGAAGGACTgtggggtgagaggagagggactagGACTGGTTAAAGGTACGGCAGAGTGTGTCTCCACCCCAGCCCCACATCCCTTACCTCTGAATGAAACAGTACCCAGGGTCCAGCGACATCAGAAGGTTAGGAGAGCGCAGCTAGCCCGTGCCAACCAAatccagagacagacaggagacaggctcTCGGAAGATGCTGGTATTAACGTTAAcggccctcctcctccccctatcAGCAAACcagcctctccctcttcctctctccccaccagCGCCAAAGCTCAGGTCCAGCAGGTGGTAGCACCACATGGCGAGGAGAGCTCATGCCAAGTGGCCGGCACATTCCAGCAGGATACCGGTGGGAGGAGGCTGCGTCTCAGGAGGGCAGAGCACCTCGAAGAAGATCAGAGCAAATCTAACATGTCAACAGTAGGATTACCTGGGGAAGAGGCCAAGCTGGCCCAAGGTGTCCAGCAAGGAAAAGCCCTGAGGGCAGAGAATACAGAGGAGGCTCTGAGAAAGCCCTGAAGCAGGCCAGTCACATACTGGAGAAGGCTTCCAGGAAGAACGCCAGGCCGGAATCACCGTAGAATCCGCTGAAAGTGTCCGGAAAGGTAACCCGGAGAACGGCAGAGAGAAATCGCCAGGACGCTGTcctttgacctctgacccctgatcTTTGACCTCTTAACCCCTGACTCCCTTTGACCAGACCAGGAAGTAGCGAAAACAGACTTGACAGTGTTAAGTCATGTGTTTACATGTGCTTATCACCTGGAGATTAAGGATAGAAAAGCCCCTGCATCTTACTTCACACAGCATCTGCTATTCAAAGCAACAAGCCAGTTACAATGCCAAGTCCCTGGcaggcagtatgtacagtatactgtacagagGATAAATATAGAAGTATATTATGGACCAAAAAcacatgtatttattattttataaaaAGATGATGCTCGTAATACATTACATTTAACCATTGTAGATATCCTGACATAGGCTATTCAATGTCATATTTTGGATGAAATATGTCTGCACATGCAGGTGACATAACCATATTTGAGCGTCCCAGTAGCTTGGTAAAGCTATGTGAAACTGACCTGCATTCAGGGATTATTATCAAGGTCTCATCAGATGGATACATTGGCTTCATCTATGACCACTGTTAACAGCTCCATCTAGTCCATAACAATGGCATCGAGTAGCAACAGAGCTCACAAACAGAGCCGCAGCAGTAATCGTGTGTTAAGATTGGCAACAGCAAATAAAGAGATTTGAAATATGCCTTCTTTTCTGAAAAAAGAAGGCCCTCACTTTGGGTACTGTGTATTTAGGCCTTCAGTTCATTCTATCATCTTTCTGCACCTTAGCTACTTCGTCAGGCGTGCAGTAGATTCCTGTAGTACATGCAATCTCAGAAGAATGTCTTTAATCAATGTTTTTCCTCCAATCAGCATGCAGTACAGCTCTACGTGTGTTTGGTAACAGAACAACGGCCATCCCTCACTGTAACAAGTGAAACACTCACAGAGACGATGTTACTCTAGTCTAGACATCCACGTTTTGAGGTGACCCATTTGTTTTCAATTTATTCCCTAAATCTAGAATGGATGTAGACATTCCAGACAGTAGTTATGGGAATGTGATTTaggtaatgtaatgtatgtttaTCATAGAGAAAAGAAGTCTCCTGAAACATGTGTGAGATTTCAAGTACAATTGTTTTCGCAGGTATGTCAAAATGAACTGACAGTGAGAAAACACATCCAAAACCATATCACAACCATTCTACATCCGAGCAAGTGAGTCGTATTAGGCAAGTCTCTCATTGACAGACTTGCAACACAAGAGGCTTCTAACACACTACTTTTTGCCTTGAGTCCCGCTGCATTCTGACAGTGAATTCATAAATTGTTTGAATATATATGTGAACCCTGCGGGAATTGAACCTACGACCAAAACCCTCAATGAGTCAGTCTGACACCAGTAGCACAGCAATGTCCatctgccccagaccatgacacgaCCACCAGACTTCCTGACCGTTTCACACCACGTAGTTAGGCTGGCCTATACTCACTTTCCCTGATTGACTGACTGCAAAGTTAATCACAAATAGGATCTCAGAATGTATAGCCATTATGTCCAATGTATGTATTTGTCAATGAcgtacaataata

Function

NR:

description
PREDICTED: uncharacterized protein LOC106570234

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971324.1 False 2757 mRNA 0.48 3 27197850 27202806
TU2645715 True 2931 TUCP 0.48 2 27197844 27202811

Neighbor

gene id symbol gene type direction distance location
LOC110488194 LOC106570237 coding upstream 14564 27141022 ~ 27183286 (+)
LOC110489414 trappc9 coding upstream 81621 26828036 ~ 27116229 (+)
LOC110488193 LOC106570239 coding upstream 376951 26816398 ~ 26820899 (+)
LOC110488192 LOC106570240 coding upstream 387613 26802039 ~ 26810237 (+)
LOC110488189 NA coding upstream 447687 26747942 ~ 26750163 (+)
LOC110488195 LOC106588620 coding downstream 631 27203437 ~ 27276446 (+)
LOC110489415 LOC106570218 coding downstream 113798 27316604 ~ 27375582 (+)
LOC118946492 NA coding downstream 333145 27535951 ~ 27536309 (+)
LOC110488197 LOC106570220 coding downstream 597761 27800567 ~ 27833055 (+)
parp10 LOC106588595 coding downstream 633856 27836662 ~ 27848059 (+)
G2312980 NA non-coding upstream 87477 27109502 ~ 27110373 (+)
G2312927 NA non-coding upstream 169693 27027610 ~ 27028157 (+)
G2312911 NA non-coding upstream 203156 26994364 ~ 26994694 (+)
G2312909 NA non-coding upstream 206398 26990174 ~ 26991452 (+)
G2312905 NA non-coding upstream 210782 26986709 ~ 26987068 (+)
G2313059 NA non-coding downstream 56163 27258969 ~ 27259751 (+)
G2313130 NA non-coding downstream 180277 27383083 ~ 27384726 (+)
G2313129 NA non-coding downstream 182026 27384832 ~ 27385419 (+)
G2313185 NA non-coding downstream 270712 27473518 ~ 27473822 (+)
G2313195 NA non-coding downstream 286922 27489728 ~ 27491272 (+)
G2312933 NA other upstream 158665 27033799 ~ 27039185 (+)
G2312752 NA other upstream 464205 26733304 ~ 26733645 (+)
G2312300 NA other upstream 872467 26325152 ~ 26325383 (+)
G2311978 NA other upstream 1278050 25919152 ~ 25919800 (+)
G2313197 NA other downstream 290293 27493099 ~ 27493735 (+)
kcng2 LOC106570224 other downstream 841149 28016566 ~ 28047334 (+)
G2314887 NA other downstream 1317449 28520255 ~ 28563595 (+)
G2314987 NA other downstream 1495934 28698740 ~ 28703424 (+)
G2316421 NA other downstream 2719578 29922384 ~ 29931480 (+)

Expression


Co-expression Network