LOC110489416 (LOC106570219)


Basic Information

Item Value
gene id LOC110489416
gene name LOC106570219
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 27499989 ~ 27653164 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971446.1
TAGTAGAGGAGCTGGAATGAGCCCTCGTTGCTAGTGGAGACGTTCCGGGGGAGCTTTAAAGAGCTTGTTTACAGAACGGAGAGAGCCTCTAGGTTGGCGGTGTTGCATGCGAGGGGTCTGCAAGGTGACGTTGAAGATATAGGCTACTACACGGATGGGATAACGGAATTCTTACTTGAGACACCCGCGCACAGACAGTTTTTGGTCGTTGTTACAGCTTAGAACTACTTATGTGATGTTATAGTGGTTGCGAATGACATTACCGCATTCCTGTTcgttttaaaaataataataatttaccgTGACTAGTTTTGGTGGGGGCAAGTGTTGGGAATAAGGCGAGGTTTTAGAATTGCATCACTGCCGAATTATTTTGTGGACGGCGTGGACCATCGGCACGGGACGAAATGGATAACGAAAAGTACTTACCAGAGCTGATGGCAGAGAAGGACACACTGGACCCCACGTTTCATCACTCTCTACGACTACTAGATCAAGAAATCGAAAAATTACAAAAAGatgaagaaaaagaagaaaaagaagaggaGAAGTTTATCGACGTGGTCATCAACAAGAACATGAAGCTGGGACAGAAAGTGTTAATACCCTTCAAACAGTTCCCCAAATTTAACTTTGTGGGCAAACTGCTGGGTCCACGCGGGAACTCACTAAAGAGACTGCAGGAAGACACGCTCACTAAGATGTCCATTCTGGGGAAAGGATCaatgagagacaaagagaagGAGGAAGAACTACGGAAGAGCGGAGAGGCCAAATATCAGCACCTGAACGAGGACCTCCATGTCCTCATAGAAGTATTCGCTCCCCCTGCAGAGGCCTACAACAGGATGGGTCACGCACTGGAGGAGATCAAGAAGTTCCTCATACCAgattACAATGATGAGATCCGACAGGCGCAGCTGCAGGAGCTGACATACCTGAATGGTGGCTCAGAGGATGCCAAGGTGCCAGCGGTGAGGGGCAAGCTGCCTGCAGCACGGGGTAGAGGGACACCTGCCCCAGGACCCATCAGGAGTCGAGGAGGTGTGCCCCCTCCCCACGTAGCTGTCCCCCGTGGAGCAGCTCCGAGAGGGGCACCCCCCAGCCGGGTGCCATCCGCCCGAGGGAGGGGCGTGCCAGCACCAAGAGCACGAGGGGCTCCCCCGTCCGCGGGGTACAGACCACCACCACCCTTAGCACAGGACACATATGGGGAATATGAATATGATGATGGATACGGGACAGCTTACGATGACCAGGGTTATGACTCCTACGACAACAGTTACAGCAATCAAGGACAGAACTCAGACGATTATTATGAGTACGGACACGATAATGGTGAGGAATCATACGAGTCATATGCAGGTCAGGAGGAGTGGACAACTAATCGCGGCAAGGTGCCAGCTGCACGGACGACCAAGGGAGTGTACAGAGAGACGCCCTACTCCAGATATTGAACTGATTATGCAACAACCTGCACAATCCCTCACGGACGTGTCATCAAGTAATGGATTTTATACGGACGCTCCCTTTTTAGAATAAAAACACTCAATCGTAAATGTGGGTTTTAAAAACAGAAAAAACCTGGTATCATATCAAGACTGTTTTCACCAGAATAATGTGTATATTTTAGTCCATCTACCCACTCCTAAACAAGTAGATATCTAAATACTATGGACCTGGTTATAGAGGGATTGGTCACTTTAATATGTTAGTGATTTAGTTGTAGAGAGGTGAAGTATTGTAGATATTTTTTTCCCGGGGGTGATTGGTCAATTGTGTCCCTTGTAAATGAAACCTTTCCAATCAGAAAACAGAACGATCCTGAAATACATATTGTTGTTTGATCTCCTTTTGTAAATGATAGTTCTCTAGTGTTAAAGGGCTTATACAAGCATGGTGTGGAATCATTGTGGATAGTGTCAGCTGTTTTATTCCTATCTTAAAACGTGTGTAgacgtgtgtgtttctgtttaaTTCCCCCCTTTAATCAATCTACATTCACAGGCCATTCTCTTCTCTTTTTTTTGTGTAAAAATCTTcagtaaaaaaataattaaaaaagacTCAAGAGCTACAAAACATTTTATGTAAAGCTCTTAATAATTAATTCCAATCTATAATTTTTTTAGTGGTTTAAAAACCTGAAATGCTTTCAGACAATGTAAAAATCCGTTTCTTGAGACGTTAAACCATGTAGAATTGGTCTGGGAGCAGAAATAGTGGATTAGCATATCAACCTTCTCTGCTTATGTAGGCCCTTTACATTTTTCTTCTTGGTTGATGCTCAATAAACTTTTTGAAAGAA
>XM_036971447.1
ATAGTAGAGGAGCTGGAATGAGCCCTCGTTGCTAGTGGAGACGTTCCGGGGGAGCTTTAAAGAGCTTGTTTACAGAACGGAGAGAGCCTCTAGGTTGGCGGTGTTGCATGCGAGGGGTCTGCAAGGTGACGTTGAAGATATAGGCTACTACACGGATGGGATAACGGAATTCTTACTTGAGACACCCGCGCACAGACAGTTTTTGGTCGTTGTTACAGCTTAGAACTACTTATGTGATGTTATAGTGGTTGCGAATGACATTACCGCATTCCTGTTcgttttaaaaataataataatttaccgTGACTAGTTTTGGTGGGGGCAAGTGTTGGGAATAAGGCGAGGTTTTAGAATTGCATCACTGCCGAATTATTTTGTGGACGGCGTGGACCATCGGCACGGGACGAAATGGATAACGAAAAGTACTTACCAGAGCTGATGGCAGAGAAGGACACACTGGACCCCACGTTTCATCACTCTCTACGACTACTAGATCAAGAAATCGAAAAATTACAAAAAGatgaagaaaaagaagaaaaagaagaggaGAAGTTTATCGACGTGGTCATCAACAAGAACATGAAGCTGGGACAGAAAGTGTTAATACCCTTCAAACAGTTCCCCAAATTTAACTTTGTGGGCAAACTGCTGGGTCCACGCGGGAACTCACTAAAGAGACTGCAGGAAGACACGCTCACTAAGATGTCCATTCTGGGGAAAGGATCaatgagagacaaagagaagGAGGAAGAACTACGGAAGAGCGGAGAGGCCAAATATCAGCACCTGAACGAGGACCTCCATGTCCTCATAGAAGTATTCGCTCCCCCTGCAGAGGCCTACAACAGGATGGGTCACGCACTGGAGGAGATCAAGAAGTTCCTCATACCAgattACAATGATGAGATCCGACAGGCGCAGCTGCAGGAGCTGACATACCTGAATGGTGGCTCAGAGGATGCCAAGGTGCCAGCGGTGAGGGGCAAGCTGCCTGCAGCACGGGGTAGAGGGACACCTGCCCCAGGACCCATCAGGAGTCGAGGAGGTGTGCCCCCTCCCCACGTAGCTGTCCCCCGTGGAGCAGCTCCGAGAGGGGCACCCCCCAGCCGGGTGCCATCCGCCCGAGGGAGGGGCGTGCCAGCACCAAGAGCACGAGGGGCTCCCCCGTCCGCGGGGTACAGACCACCACCACCCTTAGCACAGGACACATATGGGGAATATGAATATGATGATGGATACGGGACAGCTTACGATGACCAGGGTTATGACTCCTACGACAACAGTTACAGCAATCAAGGACAGAACTCAGACGATTATTATGAGTACGGACACGATAATGGTGAGGAATCATACGAGTCATATGGTCAGGAGGAGTGGACAACTAATCGCGGCAAGGTGCCAGCTGCACGGACGACCAAGGGAGTGTACAGAGAGACGCCCTACTCCAGATATTGAACTGATTATGCAACAACCTGCACAATCCCTCACGGACGTGTCATCAAGTAATGGATTTTATACGGACGCTCCCTTTTTAGAATAAAAACACTCAATCGTAAATGTGGGTTTTAAAAACAGAAAAAACCTGGTATCATATCAAGACTGTTTTCACCAGAATAATGTGTATATTTTAGTCCATCTACCCACTCCTAAACAAGTAGATATCTAAATACTATGGACCTGGTTATAGAGGGATTGGTCACTTTAATATGTTAGTGATTTAGTTGTAGAGAGGTGAAGTATTGTAGATATTTTTTTCCCGGGGGTGATTGGTCAATTGTGTCCCTTGTAAATGAAACCTTTCCAATCAGAAAACAGAACGATCCTGAAATACATATTGTTGTTTGATCTCCTTTTGTAAATGATAGTTCTCTAGTGTTAAAGGGCTTATACAAGCATGGTGTGGAATCATTGTGGATAGTGTCAGCTGTTTTATTCCTATCTTAAAACGTGTGTAgacgtgtgtgtttctgtttaaTTCCCCCCTTTAATCAATCTACATTCACAGGCCATTCTCTTCTCTTTTTTTTGTGTAAAAATCTTcagtaaaaaaataattaaaaaagacTCAAGAGCTACAAAACATTTTATGTAAAGCTCTTAATAATTAATTCCAATCTATAATTTTTTTAGTGGTTTAAAAACCTGAAATGCTTTCAGACAATGTAAAAATCCGTTTCTTGAGACGTTAAACCATGTAGAATTGGTCTGGGAGCAGAAATAGTGGATTAGCATATCAACCTTCTCTGCTTATGTAGGCCCTTTACATTTTTCTTCTTGGTTGATGCTCAATAAACTTTTTGAAAGAA
>XM_036971448.1
ATAGTAGAGGAGCTGGAATGAGCCCTCGTTGCTAGTGGAGACGTTCCGGGGGAGCTTTAAAGAGCTTGTTTACAGAACGGAGAGAGCCTCTAGGTTGGCGGTGTTGCATGCGAGGGGTCTGCAAGGTGACGTTGAAGATATAGGCTACTACACGGATGGGATAACGGAATTCTTACTTGAGACACCCGCGCACAGACAGTTTTTGGTCGTTGTTACAGCTTAGAACTACTTATGTGATGTTATAGTGGTTGCGAATGACATTACCGCATTCCTGTTcgttttaaaaataataataatttaccgTGACTAGTTTTGGTGGGGGCAAGTGTTGGGAATAAGGCGAGGTTTTAGAATTGCATCACTGCCGAATTATTTTGTGGACGGCGTGGACCATCGGCACGGGACGAAATGGATAACGAAAAGTACTTACCAGAGCTGATGGCAGAGAAGGACACACTGGACCCCACGTTTCATCACTCTCTACGACTACTAGATCAAGAAATCGAAAAATTACAAAAAGatgaagaaaaagaagaaaaagaagaggaGAAGTTTATCGACGTGGTCATCAACAAGAACATGAAGCTGGGACAGAAAGTGTTAATACCCTTCAAACAGTTCCCCAAATTTAACTTTGTGGGCAAACTGCTGGGTCCACGCGGGAACTCACTAAAGAGACTGCAGGAAGACACGCTCACTAAGATGTCCATTCTGGGGAAAGGATCaatgagagacaaagagaagGAGGAAGAACTACGGAAGAGCGGAGAGGCCAAATATCAGCACCTGAACGAGGACCTCCATGTCCTCATAGAAGTATTCGCTCCCCCTGCAGAGGCCTACAACAGGATGGGTCACGCACTGGAGGAGATCAAGAAGTTCCTCATACCAgattACAATGATGAGATCCGACAGGCGCAGCTGCAGGAGCTGACATACCTGAATGGTGGCTCAGAGGATGCCAAGGTGCCAGCGGTGAGGGGCAAGCTGCCTGCAGCACGGGGTAGAGGGACACCTGCCCCAGGACCCATCAGGAATATGATGATGGATACGGGACAGCTTACGATGACCAGGGTTATGACTCCTACGACAACAGTTACAGCAATCAAGGACAGAACTCAGACGATTATTATGAGTACGGACACGATAATGGTGAGGAATCATACGAGTCATATGCAGGTCAGGAGGAGTGGACAACTAATCGCGGCAAGGTGCCAGCTGCACGGACGACCAAGGGAGTGTACAGAGAGACGCCCTACTCCAGATATTGAACTGATTATGCAACAACCTGCACAATCCCTCACGGACGTGTCATCAAGTAATGGATTTTATACGGACGCTCCCTTTTTAGAATAAAAACACTCAATCGTAAATGTGGGTTTTAAAAACAGAAAAAACCTGGTATCATATCAAGACTGTTTTCACCAGAATAATGTGTATATTTTAGTCCATCTACCCACTCCTAAACAAGTAGATATCTAAATACTATGGACCTGGTTATAGAGGGATTGGTCACTTTAATATGTTAGTGATTTAGTTGTAGAGAGGTGAAGTATTGTAGATATTTTTTTCCCGGGGGTGATTGGTCAATTGTGTCCCTTGTAAATGAAACCTTTCCAATCAGAAAACAGAACGATCCTGAAATACATATTGTTGTTTGATCTCCTTTTGTAAATGATAGTTCTCTAGTGTTAAAGGGCTTATACAAGCATGGTGTGGAATCATTGTGGATAGTGTCAGCTGTTTTATTCCTATCTTAAAACGTGTGTAgacgtgtgtgtttctgtttaaTTCCCCCCTTTAATCAATCTACATTCACAGGCCATTCTCTTCTCTTTTTTTTGTGTAAAAATCTTcagtaaaaaaataattaaaaaagacTCAAGAGCTACAAAACATTTTATGTAAAGCTCTTAATAATTAATTCCAATCTATAATTTTTTTAGTGGTTTAAAAACCTGAAATGCTTTCAGACAATGTAAAAATCCGTTTCTTGAGACGTTAAACCATGTAGAATTGGTCTGGGAGCAGAAATAGTGGATTAGCATATCAACCTTCTCTGCTTATGTAGGCCCTTTACATTTTTCTTCTTGGTTGATGCTCAATAAACTTTTTGAAAGAA
>XM_036971449.1
AATAGTAGAGGAGCTGGAATGAGCCCTCGTTGCTAGTGGAGACGTTCCGGGGGAGCTTTAAAGAGCTTGTTTACAGAACGGAGAGAGCCTCTAGGTTGGCGGTGTTGCATGCGAGGGGTCTGCAAGGTGACGTTGAAGATATAGGCTACTACACGGATGGGATAACGGAATTCTTACTTGAGACACCCGCGCACAGACAGTTTTTGGTCGTTGTTACAGCTTAGAACTACTTATGTGATGTTATAGTGGTTGCGAATGACATTACCGCATTCCTGTTcgttttaaaaataataataatttaccgTGACTAGTTTTGGTGGGGGCAAGTGTTGGGAATAAGGCGAGGTTTTAGAATTGCATCACTGCCGAATTATTTTGTGGACGGCGTGGACCATCGGCACGGGACGAAATGGATAACGAAAAGTACTTACCAGAGCTGATGGCAGAGAAGGACACACTGGACCCCACGTTTCATCACTCTCTACGACTACTAGATCAAGAAATCGAAAAATTACAAAAAGatgaagaaaaagaagaaaaagaagaggaGAAGTTTATCGACGTGGTCATCAACAAGAACATGAAGCTGGGACAGAAAGTGTTAATACCCTTCAAACAGTTCCCCAAATTTAACTTTGTGGGCAAACTGCTGGGTCCACGCGGGAACTCACTAAAGAGACTGCAGGAAGACACGCTCACTAAGATGTCCATTCTGGGGAAAGGATCaatgagagacaaagagaagGAGGAAGAACTACGGAAGAGCGGAGAGGCCAAATATCAGCACCTGAACGAGGACCTCCATGTCCTCATAGAAGTATTCGCTCCCCCTGCAGAGGCCTACAACAGGATGGGTCACGCACTGGAGGAGATCAAGAAGTTCCTCATACCAgattACAATGATGAGATCCGACAGGCGCAGCTGCAGGAGCTGACATACCTGAATGGTGGCTCAGAGGATGCCAAGGTGCCAGCGGTGAGGGGCAAGCTGCCTGCAGCACGGGGTAGAGGGACACCTGCCCCAGGACCCATCAGGAATATGATGATGGATACGGGACAGCTTACGATGACCAGGGTTATGACTCCTACGACAACAGTTACAGCAATCAAGGACAGAACTCAGACGATTATTATGAGTACGGACACGATAATGGTGAGGAATCATACGAGTCATATGGTCAGGAGGAGTGGACAACTAATCGCGGCAAGGTGCCAGCTGCACGGACGACCAAGGGAGTGTACAGAGAGACGCCCTACTCCAGATATTGAACTGATTATGCAACAACCTGCACAATCCCTCACGGACGTGTCATCAAGTAATGGATTTTATACGGACGCTCCCTTTTTAGAATAAAAACACTCAATCGTAAATGTGGGTTTTAAAAACAGAAAAAACCTGGTATCATATCAAGACTGTTTTCACCAGAATAATGTGTATATTTTAGTCCATCTACCCACTCCTAAACAAGTAGATATCTAAATACTATGGACCTGGTTATAGAGGGATTGGTCACTTTAATATGTTAGTGATTTAGTTGTAGAGAGGTGAAGTATTGTAGATATTTTTTTCCCGGGGGTGATTGGTCAATTGTGTCCCTTGTAAATGAAACCTTTCCAATCAGAAAACAGAACGATCCTGAAATACATATTGTTGTTTGATCTCCTTTTGTAAATGATAGTTCTCTAGTGTTAAAGGGCTTATACAAGCATGGTGTGGAATCATTGTGGATAGTGTCAGCTGTTTTATTCCTATCTTAAAACGTGTGTAgacgtgtgtgtttctgtttaaTTCCCCCCTTTAATCAATCTACATTCACAGGCCATTCTCTTCTCTTTTTTTTGTGTAAAAATCTTcagtaaaaaaataattaaaaaagacTCAAGAGCTACAAAACATTTTATGTAAAGCTCTTAATAATTAATTCCAATCTATAATTTTTTTAGTGGTTTAAAAACCTGAAATGCTTTCAGACAATGTAAAAATCCGTTTCTTGAGACGTTAAACCATGTAGAATTGGTCTGGGAGCAGAAATAGTGGATTAGCATATCAACCTTCTCTGCTTATGTAGGCCCTTTACATTTTTCTTCTTGGTTGATGCTCAATAAACTTTTTGAAAGAA

Function

NR:

description
KH domain-containing, RNA-binding, signal transduction-associated protein 3

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14942 KHDRBS3, SLM2; KH domain-containing, RNA-binding, signal transduction-associated protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971446.1 False 2308 mRNA 0.45 9 27499989 27653162
XM_036971447.1 False 2306 mRNA 0.45 9 27499989 27653163
XM_036971448.1 False 2122 mRNA 0.43 8 27499989 27653163
XM_036971449.1 True 2120 mRNA 0.42 8 27499989 27653164
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110488196 LOC106570217 coding downstream 186913 27277460 ~ 27313076 (-)
LOC110488191 LOC106570241 coding downstream 717154 26770429 ~ 26782835 (-)
LOC110488190 tpbg coding downstream 735299 26761125 ~ 26764690 (-)
LOC110488187 LOC106570243 coding downstream 754673 26716779 ~ 26745316 (-)
LOC110488186 nudc coding downstream 787103 26705216 ~ 26712886 (-)
LOC110488201 LOC106570223 coding upstream 210602 27863766 ~ 27871393 (-)
slc66a2 pqlc1 coding upstream 403634 28056798 ~ 28082963 (-)
txn4a txn4a coding upstream 431040 28084204 ~ 28098235 (-)
LOC118946452 LOC106570226 coding upstream 431132 28084296 ~ 28090090 (-)
LOC110488202 LOC106570229 coding upstream 445219 28098383 ~ 28114081 (-)
G2314261 NA non-coding downstream 13194 27486554 ~ 27486795 (-)
G2314251 NA non-coding downstream 27948 27471823 ~ 27472041 (-)
G2314210 NA non-coding downstream 85569 27414180 ~ 27414420 (-)
G2314209 NA non-coding downstream 85958 27413649 ~ 27414031 (-)
G2314208 NA non-coding downstream 87003 27412781 ~ 27412986 (-)
G2314375 NA non-coding upstream 43278 27696442 ~ 27696972 (-)
G2314409 NA non-coding upstream 98800 27751964 ~ 27759319 (-)
G2314464 LOC106588592 non-coding upstream 196337 27849501 ~ 27850548 (-)
G2314554 NA non-coding upstream 357656 28010820 ~ 28066734 (-)
G2314561 NA non-coding upstream 363550 28016714 ~ 28017109 (-)
G2313729 NA other downstream 975380 26524244 ~ 26524609 (-)
G2312079 LOC106582599 other downstream 1530628 25968983 ~ 25969361 (-)
G2311141 NA other downstream 2336859 25162692 ~ 25163130 (-)
umad1 LOC106588684 other downstream 3520736 23962314 ~ 23979279 (-)
G2310415 NA other downstream 3681983 23816297 ~ 23818006 (-)
LOC110488229 LOC106570201 other upstream 1641092 29283078 ~ 29318812 (-)
G2316235 NA other upstream 1844766 29497930 ~ 29500245 (-)
G2316696 NA other upstream 2381134 30034298 ~ 30039597 (-)
G2318269 NA other upstream 3482343 31135507 ~ 31135959 (-)
LOC110488289 LOC106569889 other upstream 3670224 31323368 ~ 31334791 (-)

Expression

LOC110489416(LOC106570219) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110489416(LOC106570219) Expression in each Bioproject

Bar chart with 12 bars.
LOC110489416(LOC106570219) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network