XLOC_004168 (ptpdc1a)


Basic Information

Item Value
gene id XLOC_004168
gene name ptpdc1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27511277 ~ 27537661 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007966
TGAGCAGCGAAACTGATACAAATGCACGCGCCCGCGTCTGCTGTTGATTCATGCTTTTGCATTTCACCATGAGTTCAGTGGAAACAATGGTCTTCAGCTAACAGAATCCGCACCCACGGACCGAGTGTCGGTCATGGCAGCAGGTGTTAGTTTGGTGAGTGATCTGCCCTACTCCACCAGCAGAGAGTCCAACACTGACATGGAGACAGTTAATGTCCGAGTACCCACGGCGAAGTACACCAAGGTGGGTGAGACTTTGAGGCATGTCATCCCAGGACATATGCAGTGCTCCATGGCATGTGGAGGTCGAGCATGCAAATATGAAAACCCCTCTCGCTGGAGCGACAAGGAGCAAGCCGTCAAAGGACTCTACTCCTCATGGATAACCGATCACCTGTTAGCCATGGCAAGACCTTCAACTGAAATCGTTGAAAAATTCAACATCATTGAACAATTCCATGTATGTGGTTTGAAGACTGTAATCAACCTGCAGCGTCCAGGGGAACATGCGAGCTGCGGCAGCACTCTGGAGCCAGAGAGCGGCTTCACTTATCGCCCAGAGCTTTTCATGGAGGCAGGGATTTATTTTTACAACTTTGGCTGGAAGGATTATGGTGTGGCATCCTTGACTACTATCCTTGACATGGTGAAGGTGATGTCATTTGCTATGCAAGAAGGGAAAATCGCTGTCCACTGCCATGCTGGACTGGGCAGAACAGgtgtcttaatagcaTGCTTCTTGGTTTTCACATCCCGGATGAGTGCGGATCAAGCCATTTTGTTCGTTAGAGCTAAACGTCCCAACTCAATCCAGACCCGTGGCCAACTGTTGTGCGTTCGAGAGTTCGCCCAGTTCCTTGTGCCCCTGAGGAGTGTGTTTTCATGTGCCGAGCCTAAAGCTCATGAGGTCACGTTGTCGCAGTATCTGACCCGTCAGCGGCATCTGCTGCATGGATATGAGGCGCGCCACATGAAGAACATGCCAAAGATCATACACCTGATCTGCAGGCTACTGCTGGATATCGCAGAGAACCGGCAGACGGTGGAAGAGGAGGTGTTGGAAATCCCAGACCTCACAGAGGAGGTGGAGAAAACCGTCTCTCTGCAGGCCCTTCAGCAGTTGGGGAAGGAAATGAGGGGCAAAGGCATTCCCATTTCCTCACCTCGATCCCCCGACCAGCCCAATTTGCTTGGGACACCGTGTGATCCACCTCACGACCAGCCGCTCTGCAGTGACCAAGAGTTTGATGTGCTCTGGAGGTGGCCGACAGTAGACAATACCTACAGGTCTCGGCTCATCTTAAGCAAGTGTTTTAGCTATAGTGACTCCGCTTTGCACAAACTAGACCCAAGGGTACACGTGCTACAAAGTCCCCAAAATCTTGGCAGCAAATCTGGGTTAAACTTTTCCGAGCTTTATGCATCTCAGAACAGATTAGCTCTAGAAACTCCTGATCTTCTGCCATCAGATATCAAAAGCAGCCCCAAACATGACCTTTTAACTGGTTCTAGGAGCTCCTTGGTACAGTCCAAAAAAATTGAAGAGCAAGTATCCTGCTCTCCCGCCTCTGTAAAACAGGCACCTCTGAAAGTGGCCAAGCGCAGCATGTCTTATGGATTTCTAGGGAGGACTAATGACAGCAGTACAATGTTTTCAATATGTCAAGTCGGCAGAAGCACTAACAAAAACTCAAACTGTGATGTCACGCAACATTTCAAGGATGTTCCCATTTTAACGCTTCAGAGTGAACTCTCGCCTGAGACTCGTCATCTGTTTGTGGCCAAAGCTCTCACTGTGGACCTTGATGGAGAGGAACTCAGGAGTAAAGTCTCAGTGTGGCAGATGGAGCTGAACTCTCGTGAAGGTGCATGGGAGAGGCTGTGCAACGAGAGAGATCCAGTGGTGCTCTCACTGCTCATGTGGTCCTGGCTGGAGCAGTTGAAGGAGCCCGTCATCACAAAGGACGATGTGGAGACTTTGTCTGGAAACAGACTGAATCCAGAGCATGCGCTGAATTCACTCGACAAGGGTCAAAAACAAACACTTCTCTGTATTCTCGACTGTGCTGCTCATTTGCTTAAAATTCCAGAGGAAGTTGAGAATGCCTTTTTTGAACGCTTAATCAAAGCATTTACATGGATTTCCTCAGATTCAGAGAATGGCCAATTAATCTATAAGGCTCTGAAAGACGTCATGGTCCCTGTTCTCAGGGATTTGAGGACAAAAGCAATGGAGGAGCTGGAGTTCACCTGCCACTGTTCATTCGTACCATGATCAACCGAATAAGGGAAAGTCAAGTCTGGAGTCTGCACTGTCATTTTTAAGAAACAAATGATACAAAAAGGCACACACTAACAGGTGtggtgtttattttttctgtattcagtgtctttgccatgatcactCCTTTAAATAATGTAATCTTAATGTCTTTTATGTGAGAGAGAACAATAATTACTGCCATACATGTGTGCCACAATGTTTTGTTAGgctatttttctaatttttttccttaatagtttatttttggtATACAATATTTATTAGCTAACTgattaaactatttattaataGCTAAGtcctgtatgtatttatttttatgctttcgTTTGGATTTAACGAACTGAGAATTCTCATGAAAGTATGTTTTGTCTTATAAAACTGTTTGAATAGAGAGGACGTTAGACGTACCTCATTATTGACTAAACCAAATAATATCACTGTGCAACATCTCATTTTATGATCAaatttttaatggttttattgAATGAAGCAAATTGTCAAATttgctgattttttatttatttcattttttgcctTTGCAATTTAAATGATTGTATTTGAAGTACAATAGGGGACTGCTGAATGCTTTCATTCATAATGCAATGCTGTTTACATTAGTAATAGATCAGCATGGACTTGATCACAATTTTGAAAAAGGATTTGAGAATGTATTGATACAATTCCTGGTAACATGAAACAAAATACTGCCCTGTATACAGACTTTTGCAGGATGCTCTTTACATTGTTATCGGCATTATTTATAACTAAGCTGCTTCTTTTAATGAATTTAGGAAcgcaaatatacaaatatgtgtATTGTGGTGTTTAATACTAGCGAACACTGTGTTAACACTGAcctcatttcttttttgttttgtcaattGTAATTGTCTTTGTCAAATCATGTAGCCAGCAGAAtatgtgtttattcattcatgtcTGTGGAAGAATTGTATAGTTTTTCTTGTTCAGTTCTTAAAAGGAAGAGTGTGGATTTTTCAAagcactatatttttatttattacatttccattgcgttctacaaaataaacattttgaatgtTA
>TCONS_00007967
ACTGATACAAATGCACGCGCCCGCGTCTGCTGTTGATTCATGCTTTTGCATTTCACCATGAGTTCAGTGGAAACAATGGTCTTCAGCTAACAGAATCCGCACCCACGGACCGAGTGTCGGTCATGGCAGCAGGTGTTAGTTTGGTGAGTGATCTGCCCTACTCCACCAGCAGAGAGTCCAACACTGACATGGAGACAGTTAATGTCCGAGTACCCACGGCGAAGTACACCAAGGTGGGTGAGACTTTGAGGCATGTCATCCCAGGACATATGCAGTGCTCCATGGCATGTGGAGGTCGAGCATGCAAATATGAAAACCCCTCTCGCTGGAGCGACAAGGAGCAAGCCGTCAAAGGACTCTACTCCTCATGGATAACCGATCACCTGTTAGCCATGGCAAGACCTTCAACTGAAATCGTTGAAAAATTCAACATCATTGAACAATTCCATGTATGTGGTTTGAAGACTGTAATCAACCTGCAGCGTCCAGGGGAACATGCGAGCTGCGGCAGCACTCTGGAGCCAGAGAGCGGCTTCACTTATCGCCCAGAGCTTTTCATGGAGGCAGGGAgtactgaccaggctcagccctacttggcttcagtgagtaaccggtctcgGGCtgtagggtgatatggctgtggctataCATGGGCAAGAGCTGTGGCTGTTTATTTGCAATGTTGAGGACGTGTATGTTTTAATGTTCATCACATTGGTATTTGTGCTTCTCCTAAATACTgctgtctatttaaaaaaataaaatcatttgtgTACAATC
>TCONS_00007968
ATGAGTTCAGTGGAAACAATGGTCTTCAGCTAACAGAATCCGCACCCACGGACCGAGTGTCGGTCATGGCAGCAGGTGTTAGTTTGGTGAGTGATCTGCCCTACTCCACCAGCAGAGAGTCCAACACTGACATGGAGACAGTTAATGTCCGAGTACCCACGGCGAAGTACACCAAGGTGGGTGAGACTTTGAGGCATGTCATCCCAGGACATATGCAGTGCTCCATGGCATGTGGAGGTCGAGCATGCAAATATGAAAACCCCTCTCGCTGGAGCGACAAGGAGCAAGCCGTCAAAGGACTCTACTCCTCATGATGTGGTTTGAAGACTGTAATCAACCTGCAGCGTCCAGGGGAACATGCGAGCTGCG

Function

symbol description
ptpdc1a Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in cilium assembly. Predicted to act upstream of or within cell projection organization and dephosphorylation. Predicted to be active in cytoplasm. Orthologous to human PTPDC1 (protein tyrosine phosphatase domain containing 1).

GO:

id name namespace
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-632 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in cilium assembly. Predicted to act upstream of or within cell projection organization and dephosphorylation. Predicted to be active in cytoplasm. Orthologous to human PTPDC1 (protein tyrosine phosphatase domain containing 1).

Ensembl:

ensembl_id ENSDARG00000061656

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007966 False 3349 mRNA 0.43 10 27511277 27537661
TCONS_00007967 False 780 mRNA 0.49 6 27520321 27537650
TCONS_00007968 True 369 mRNA 0.53 4 27521513 27537593

Neighbor

gene id symbol gene type direction distance location
XLOC_004167 NA coding downstream 3304 27502205 ~ 27507973 (-)
XLOC_004166 wnt7aa coding downstream 10250 27486584 ~ 27501027 (-)
XLOC_004164 iqsec1b coding downstream 453705 26704181 ~ 27057572 (-)
XLOC_004165 CR847934.1 coding downstream 762848 26748292 ~ 26748429 (-)
XLOC_004163 acad9 coding downstream 809666 26685982 ~ 26701611 (-)
XLOC_004169 NA coding upstream 5917 27543578 ~ 27625465 (-)
XLOC_004170 phf2 coding upstream 106863 27644524 ~ 27702835 (-)
XLOC_004171 fam120a coding upstream 167369 27705030 ~ 27739049 (-)
XLOC_004172 cass4 coding upstream 207957 27745618 ~ 27778831 (-)
XLOC_004173 BX601648.1 coding upstream 246097 27783758 ~ 27806767 (-)
XLOC_004063 CR854846.1 misc downstream 11383599 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 14819586 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 14889510 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 14919981 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 14998015 12512966 ~ 12513262 (-)
XLOC_004152 CR933820.1 non-coding downstream 1841322 25669839 ~ 25669955 (-)
XLOC_004150 NA non-coding downstream 2034297 25475305 ~ 25476980 (-)
XLOC_004147 NA non-coding downstream 2102381 25368112 ~ 25408896 (-)
XLOC_004174 NA non-coding upstream 263198 27800859 ~ 27809715 (-)
XLOC_004180 NA non-coding upstream 659296 28196957 ~ 28200504 (-)
XLOC_004181 NA non-coding upstream 881215 28418876 ~ 28424141 (-)

Expression


Co-expression Network