LOC110488226 (rpc7l)


Basic Information

Item Value
gene id LOC110488226
gene name rpc7l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 29215636 ~ 29223759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560362.2
GACAGTAGGGTGGAACTATTGCGCACAGAATGTGTTTCCTGAGACATTCAATGCCGACGGAACACACGTGGACTCCAGTTGAAAACATCCGGCTGTCTGTGCACGTGTGGGCATACTCAGAAATCAATTTTCATATTCTAAGCATTTAGCAACatacccatccccatccccatggCTGGAAGAGGCAGGGGTCGTGGAAGGGGACAGATGACCTTCAACCTGGAGGATGTGGGCATAGGAAGGGGGGACAGCCTGCCCCCCACCACCTTTAAGCCCTCACCCCTCTTCCCTCCCATGCCAGTCCAGCCTGTGCCCctgcagacaggagaggaggtggagtacATGCTTGCTCTGAAACAGGAGCTGAGGGCCGCCACCAAGACCCTGCCTTTCTACATCAGACGGGCTGCTCCCAAAAGAGATGTCGATCGCTACTCTGATAAGTACCAGAGCGGAGAGCCCAAGGACAGCACCATCGAGTGGAGCCCAGACTGGAGCAGATTGCCTAAAGAGCTTTGTGTTAAAGTGAGAGAACCTCGGGGTAAAAGACCCACACCTCAAGTTAAACGGACAAAGGTGCCTCTTGTAGGAAAAGAGGAGATTCTCACCAAGCTAGAGACTCTTGAAAAGAAAGAAGAGGCGGTGAACTCTGAGGAAGAGCAGGACGAGGAGAAAAAGAAGACGAACGAGGAAGAAGAACAGGCAGATGAAGAGGACTATGAGGAAGACTTTGAAGAGGATACCGACTACATCATGTCTTACTTTGACAATGGAGAGGAGTTTGGAGGGGACAGTGATGACAACATGGACGAAGCCACTTACTGAGAGACCGTAAGAGTGTTGATAACACTGACTAGACAAAAAGAGACGGCTTTGCGTTATCCTCCCTGCGGACATAGTTACAGTATTCTAATTACTTGTGGAGTCATTGGCCATGGGAACAGACATTGACCGGTATAGTCTAAAACATGGAAAGAACAATATACTGCTATGTGATAACCTAGATCCAAGACATGGAAGATGGTGACAGCTGGTGAAAACAGTGGCTCAATGTAGACATCTAGAGAGAATGGTCAGACATTTTCTTATTGTGTGTGGTGATTTAAAGTGCCAAAGATCCTAACTAGTCATGCTGACTGTTCCCCTTTCTTCAGCTATGTTGAGGTAGTAATGGGAGCTGAAGTATTTACAGGATATTGATGCCTTTTATAACTTTAACGGATTTGATGGTTTTAATTAACACGTACAATTGCAGCAGTCTACGGTTTTTAAAGTAAAGACGTGTTTTAGAGAGGTATTTTAGCTTTTGTAATTCCTTGGTGTAAGTCTCTTTTAAGTGTATACGACAATCAAATGTTGAAAACAATAGTTGCAATCCCAAAAAATGGTGTGTAttctttttaaatatgtttttcctGTAATGTCAAATTATATTATGCCGGTTGACAATTTGAAAGTGTTTCATTTGAGTCTAAATACATTTTATAGCTCCAGAGTAAATATTTGTATCAACCAA
>XM_021560364.2
TGGATCTGGTTTGGGCTCTGTAGACTGCAGCATTTCTAACGTTACTACTAAGTTAGCTAGCCATTCAAGATATTTGGTTTTGGGGGAAAAATAAGACATTAGGGTTGGATTCTGTTGGGCTTGGTTTTTATACTGTGCGTTTCAGGGCTTGGCTCTATATTTTACGATCTCAACTGACACATTGTAGCATTTAGCAACatacccatccccatccccatggCTGGAAGAGGCAGGGGTCGTGGAAGGGGACAGATGACCTTCAACCTGGAGGATGTGGGCATAGGAAGGGGGGACAGCCTGCCCCCCACCACCTTTAAGCCCTCACCCCTCTTCCCTCCCATGCCAGTCCAGCCTGTGCCCctgcagacaggagaggaggtggagtacATGCTTGCTCTGAAACAGGAGCTGAGGGCCGCCACCAAGACCCTGCCTTTCTACATCAGACGGGCTGCTCCCAAAAGAGATGTCGATCGCTACTCTGATAAGTACCAGAGCGGAGAGCCCAAGGACAGCACCATCGAGTGGAGCCCAGACTGGAGCAGATTGCCTAAAGAGCTTTGTGTTAAAGTGAGAGAACCTCGGGGTAAAAGACCCACACCTCAAGTTAAACGGACAAAGGTGCCTCTTGTAGGAAAAGAGGAGATTCTCACCAAGCTAGAGACTCTTGAAAAGAAAGAAGAGGCGGTGAACTCTGAGGAAGAGCAGGACGAGGAGAAAAAGAAGACGAACGAGGAAGAAGAACAGGCAGATGAAGAGGACTATGAGGAAGACTTTGAAGAGGATACCGACTACATCATGTCTTACTTTGACAATGGAGAGGAGTTTGGAGGGGACAGTGATGACAACATGGACGAAGCCACTTACTGAGAGACCGTAAGAGTGTTGATAACACTGACTAGACAAAAAGAGACGGCTTTGCGTTATCCTCCCTGCGGACATAGTTACAGTATTCTAATTACTTGTGGAGTCATTGGCCATGGGAACAGACATTGACCGGTATAGTCTAAAACATGGAAAGAACAATATACTGCTATGTGATAACCTAGATCCAAGACATGGAAGATGGTGACAGCTGGTGAAAACAGTGGCTCAATGTAGACATCTAGAGAGAATGGTCAGACATTTTCTTATTGTGTGTGGTGATTTAAAGTGCCAAAGATCCTAACTAGTCATGCTGACTGTTCCCCTTTCTTCAGCTATGTTGAGGTAGTAATGGGAGCTGAAGTATTTACAGGATATTGATGCCTTTTATAACTTTAACGGATTTGATGGTTTTAATTAACACGTACAATTGCAGCAGTCTACGGTTTTTAAAGTAAAGACGTGTTTTAGAGAGGTATTTTAGCTTTTGTAATTCCTTGGTGTAAGTCTCTTTTAAGTGTATACGACAATCAAATGTTGAAAACAATAGTTGCAATCCCAAAAAATGGTGTGTAttctttttaaatatgtttttcctGTAATGTCAAATTATATTATGCCGGTTGACAATTTGAAAGTGTTTCATTTGAGTCTAAATACATTTTATAGCTCCAGAGTAAATATTTGTATCAACCAA
>XM_021560363.2
ACTGGAGAGGTCACTGGCCGGCAGTTCAAATATCATAGCAAACTGTAGCTATATATTTTGCTTGCTAAGGATTTGGTTTAATCATGTGTGATATTAACTTTCCAGATTCCAGAACGATACAGAAGAGTCAGTAGGGCCAGGGTGAAGtgcgatagctagctagctttcttaTTTTGTATGGACTTCCATGCTGTAATTGAGTGCTAGCTACCTAACGAACGGTATCTACCCAAAGTTAGCTAGTTAATGTTACCAGTTATCTGTAAACAAAGCATTTAGCAACatacccatccccatccccatggCTGGAAGAGGCAGGGGTCGTGGAAGGGGACAGATGACCTTCAACCTGGAGGATGTGGGCATAGGAAGGGGGGACAGCCTGCCCCCCACCACCTTTAAGCCCTCACCCCTCTTCCCTCCCATGCCAGTCCAGCCTGTGCCCctgcagacaggagaggaggtggagtacATGCTTGCTCTGAAACAGGAGCTGAGGGCCGCCACCAAGACCCTGCCTTTCTACATCAGACGGGCTGCTCCCAAAAGAGATGTCGATCGCTACTCTGATAAGTACCAGAGCGGAGAGCCCAAGGACAGCACCATCGAGTGGAGCCCAGACTGGAGCAGATTGCCTAAAGAGCTTTGTGTTAAAGTGAGAGAACCTCGGGGTAAAAGACCCACACCTCAAGTTAAACGGACAAAGGTGCCTCTTGTAGGAAAAGAGGAGATTCTCACCAAGCTAGAGACTCTTGAAAAGAAAGAAGAGGCGGTGAACTCTGAGGAAGAGCAGGACGAGGAGAAAAAGAAGACGAACGAGGAAGAAGAACAGGCAGATGAAGAGGACTATGAGGAAGACTTTGAAGAGGATACCGACTACATCATGTCTTACTTTGACAATGGAGAGGAGTTTGGAGGGGACAGTGATGACAACATGGACGAAGCCACTTACTGAGAGACCGTAAGAGTGTTGATAACACTGACTAGACAAAAAGAGACGGCTTTGCGTTATCCTCCCTGCGGACATAGTTACAGTATTCTAATTACTTGTGGAGTCATTGGCCATGGGAACAGACATTGACCGGTATAGTCTAAAACATGGAAAGAACAATATACTGCTATGTGATAACCTAGATCCAAGACATGGAAGATGGTGACAGCTGGTGAAAACAGTGGCTCAATGTAGACATCTAGAGAGAATGGTCAGACATTTTCTTATTGTGTGTGGTGATTTAAAGTGCCAAAGATCCTAACTAGTCATGCTGACTGTTCCCCTTTCTTCAGCTATGTTGAGGTAGTAATGGGAGCTGAAGTATTTACAGGATATTGATGCCTTTTATAACTTTAACGGATTTGATGGTTTTAATTAACACGTACAATTGCAGCAGTCTACGGTTTTTAAAGTAAAGACGTGTTTTAGAGAGGTATTTTAGCTTTTGTAATTCCTTGGTGTAAGTCTCTTTTAAGTGTATACGACAATCAAATGTTGAAAACAATAGTTGCAATCCCAAAAAATGGTGTGTAttctttttaaatatgtttttcctGTAATGTCAAATTATATTATGCCGGTTGACAATTTGAAAGTGTTTCATTTGAGTCTAAATACATTTTATAGCTCCAGAGTAAATATTTGTATCAACCAA
>XM_021560365.2
AACatacccatccccatccccatggCTGGAAGAGGCAGGGGTCGTGGAAGGGGACAGATGACCTTCAACCTGGAGGATGTGGGCATAGGAAGGGGGGACAGCCTGCCCCCCACCACCTTTAAGCCCTCACCCCTCTTCCCTGCAATTTTCTCTCTGAGCCCATGCCAGTCCAGCCTGTGCCCctgcagacaggagaggaggtggagtacATGCTTGCTCTGAAACAGGAGCTGAGGGCCGCCACCAAGACCCTGCCTTTCTACATCAGACGGGCTGCTCCCAAAAGAGATGTCGATCGCTACTCTGATAAGTACCAGAGCGGAGAGCCCAAGGACAGCACCATCGAGTGGAGCCCAGACTGGAGCAGATTGCCTAAAGAGCTTTGTGTTAAAGTGAGAGAACCTCGGGGTAAAAGACCCACACCTCAAGTTAAACGGACAAAGGTGCCTCTTGTAGGAAAAGAGGAGATTCTCACCAAGCTAGAGACTCTTGAAAAGAAAGAAGAGGCGGTGAACTCTGAGGAAGAGCAGGACGAGGAGAAAAAGAAGACGAACGAGGAAGAAGAACAGGCAGATGAAGAGGACTATGAGGAAGACTTTGAAGAGGATACCGACTACATCATGTCTTACTTTGACAATGGAGAGGAGTTTGGAGGGGACAGTGATGACAACATGGACGAAGCCACTTACTGAGAGACCGTAAGAGTGTTGATAACACTGACTAGACAAAAAGAGACGGCTTTGCGTTATCCTCCCTGCGGACATAGTTACAGTATTCTAATTACTTGTGGAGTCATTGGCCATGGGAACAGACATTGACCGGTATAGTCTAAAACATGGAAAGAACAATATACTGCTATGTGATAACCTAGATCCAAGACATGGAAGATGGTGACAGCTGGTGAAAACAGTGGCTCAATGTAGACATCTAGAGAGAATGGTCAGACATTTTCTTATTGTGTGTGGTGATTTAAAGTGCCAAAGATCCTAACTAGTCATGCTGACTGTTCCCCTTTCTTCAGCTATGTTGAGGTAGTAATGGGAGCTGAAGTATTTACAGGATATTGATGCCTTTTATAACTTTAACGGATTTGATGGTTTTAATTAACACGTACAATTGCAGCAGTCTACGGTTTTTAAAGTAAAGACGTGTTTTAGAGAGGTATTTTAGCTTTTGTAATTCCTTGGTGTAAGTCTCTTTTAAGTGTATACGACAATCAAATGTTGAAAACAATAGTTGCAATCCCAAAAAATGGTGTGTAttctttttaaatatgtttttcctGTAATGTCAAATTATATTATGCCGGTTGACAATTTGAAAGTGTTTCATTTGAGTCTAAATACATTTTATAGCTCCAGAGTAAATATTTGTATCAACCAA
>XM_036971527.1
GCACATGGAGTCAGGGCTTGTAACACAGTCTGGACTCACCTTGCCACAATTGCTTATAGTGCTCTTGAGCATCACAAAATTAAAATAATGACTTATCTAATATTGCTAGTAATGTAATGCGTAAATGTTTTCTTTTTCTCTTCAAGGCAATTTTCTCTCTGAGCCCATGCCAGTCCAGCCTGTGCCCctgcagacaggagaggaggtggagtacATGCTTGCTCTGAAACAGGAGCTGAGGGCCGCCACCAAGACCCTGCCTTTCTACATCAGACGGGCTGCTCCCAAAAGAGATGTCGATCGCTACTCTGATAAGTACCAGAGCGGAGAGCCCAAGGACAGCACCATCGAGTGGAGCCCAGACTGGAGCAGATTGCCTAAAGAGCTTTGTGTTAAAGTGAGAGAACCTCGGGGTAAAAGACCCACACCTCAAGTTAAACGGACAAAGGTGCCTCTTGTAGGAAAAGAGGAGATTCTCACCAAGCTAGAGACTCTTGAAAAGAAAGAAGAGGCGGTGAACTCTGAGGAAGAGCAGGACGAGGAGAAAAAGAAGACGAACGAGGAAGAAGAACAGGCAGATGAAGAGGACTATGAGGAAGACTTTGAAGAGGATACCGACTACATCATGTCTTACTTTGACAATGGAGAGGAGTTTGGAGGGGACAGTGATGACAACATGGACGAAGCCACTTACTGAGAGACCGTAAGAGTGTTGATAACACTGACTAGACAAAAAGAGACGGCTTTGCGTTATCCTCCCTGCGGACATAGTTACAGTATTCTAATTACTTGTGGAGTCATTGGCCATGGGAACAGACATTGACCGGTATAGTCTAAAACATGGAAAGAACAATATACTGCTATGTGATAACCTAGATCCAAGACATGGAAGATGGTGACAGCTGGTGAAAACAGTGGCTCAATGTAGACATCTAGAGAGAATGGTCAGACATTTTCTTATTGTGTGTGGTGATTTAAAGTGCCAAAGATCCTAACTAGTCATGCTGACTGTTCCCCTTTCTTCAGCTATGTTGAGGTAGTAATGGGAGCTGAAGTATTTACAGGATATTGATGCCTTTTATAACTTTAACGGATTTGATGGTTTTAATTAACACGTACAATTGCAGCAGTCTACGGTTTTTAAAGTAAAGACGTGTTTTAGAGAGGTATTTTAGCTTTTGTAATTCCTTGGTGTAAGTCTCTTTTAAGTGTATACGACAATCAAATGTTGAAAACAATAGTTGCAATCCCAAAAAATGGTGTGTAttctttttaaatatgtttttcctGTAATGTCAAATTATATTATGCCGGTTGACAATTTGAAAGTGTTTCATTTGAGTCTAAATACATTTTATAGCTCCAGAGTAAATATTTGTATCAACCAA

Function

NR:

description
PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like isoform X2

GO:

id name namespace
GO:0032774 RNA biosynthetic process biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function

KEGG:

id description
K03024 RPC7, POLR3G; DNA-directed RNA polymerase III subunit RPC7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560362.2 False 1516 mRNA 0.44 8 29215636 29223759
XM_021560364.2 False 1561 mRNA 0.44 8 29215912 29223759
XM_021560363.2 False 1646 mRNA 0.44 8 29216201 29223759
XM_021560365.2 False 1383 mRNA 0.44 8 29216605 29223759
XM_036971527.1 True 1388 mRNA 0.42 7 29216754 29223759

Neighbor

gene id symbol gene type direction distance location
LOC110488225 LOC106588560 coding upstream 495 29169839 ~ 29271629 (+)
LOC110489420 LOC106570197 coding upstream 173205 29017561 ~ 29042431 (+)
LOC110489419 ssr2 coding upstream 223977 28983188 ~ 28994465 (+)
LOC110488216 LOC106570190 coding upstream 744276 28468750 ~ 28471360 (+)
LOC110488215 LOC106570189 coding upstream 777645 28436066 ~ 28437991 (+)
LOC118946464 NA coding downstream 142668 29366427 ~ 29369552 (+)
LOC110488231 NA coding downstream 145910 29369669 ~ 29376118 (+)
LOC110488235 LOC106570205 coding downstream 215154 29438913 ~ 29447508 (+)
LOC110488238 LOC106570207 coding downstream 265118 29488877 ~ 29491478 (+)
LOC110488239 krit1 coding downstream 272296 29496055 ~ 29507318 (+)
G2315552 NA non-coding upstream 179717 29035699 ~ 29035919 (+)
G2315529 NA non-coding upstream 198243 29017114 ~ 29017393 (+)
G2315522 NA non-coding upstream 200764 29014584 ~ 29014872 (+)
G2315517 NA non-coding upstream 206684 29008743 ~ 29008952 (+)
G2315734 NA non-coding downstream 42783 29266542 ~ 29301958 (+)
G2315770 NA non-coding downstream 103127 29326886 ~ 29328170 (+)
G2315786 NA non-coding downstream 125701 29349460 ~ 29350016 (+)
G2315787 NA non-coding downstream 126596 29350355 ~ 29350864 (+)
G2315772 NA non-coding downstream 170088 29393847 ~ 29395564 (+)
G2314987 NA other upstream 512212 28698740 ~ 28703424 (+)
G2314887 NA other upstream 652041 28520255 ~ 28563595 (+)
kcng2 LOC106570224 other upstream 1168302 28016566 ~ 28047334 (+)
G2313197 NA other upstream 1721901 27493099 ~ 27493735 (+)
LOC118946485 LOC106570234 other upstream 2012825 27197844 ~ 27202811 (+)
G2316421 NA other downstream 698625 29922384 ~ 29931480 (+)
tmem79a LOC106569868 other downstream 1594269 30817937 ~ 30822555 (+)
G2317455 NA other downstream 1609971 30833730 ~ 30835101 (+)
G2317562 LOC100196669 other downstream 1873860 31097619 ~ 31127687 (+)
G2317685 LOC106569887 other downstream 1998358 31222117 ~ 31223562 (+)

Expression


Co-expression Network