LOC110488229 (LOC106570201)


Basic Information

Item Value
gene id LOC110488229
gene name LOC106570201
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 29283078 ~ 29318812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560367.2
AGTGTTCGGTGCAGCACACCCCAAGCTGCGCGGATCACGAGCGAGACCCGCTGACCTGCCTGGCTGTGCGAGCCTAAACTCCTTGACAACTCCACCCGCGCTGGTCAGCGTGCCGGTCGAGGAGTGTTCTTCACACACTCCCACTCACGTTTCGTTACTTCGGTGTAGTCACAGTTGAAAAGTTATACATTCGATTATTTAGGTAACGTTTATAAACCTTGTGCCTTGAGGATGGATATGGTGAGGTTTGTGCTACATTTGCTGCTTGCGAGCGCGGCGGTTCTCTTGGGCTTGACCAGGGCTTCAGAAATGCAAGTGATTGACATGCTGGAGCTTCACGATGCCAGGCAGAGTGCGTCCGCGGTGGGGAAGATGTCGGGGGCTCTGGGCTTCGTGTCGGACCTTTACCTGGTGTCAACTCTTCGTCTGCCGCCCAAACTGGGAGGAGTGCTGTTGGGAGTCTACAACAAAGGCGACAACAGGAAGTACCTGGAGGTGGCCCTCATGGGCAAGGTCAACAAAGtTCTGGTGCGCTACGTACGCGAGGATGGTAAACTACACACTGTGAACCTCCAGAACCCCGGCCTCTCCGATGGACGCACCCAGTCACTCCTCCTCCGTGTGGGTGGGCTCCAACGAAACCACCTCCACATGGAACTCTATGTCAACTGCCGATTGGCTGACTCAGCACAGGTCCTGCCATCCATGGTCCAGCTCCCAGCTGAGGCAGAGTCTGTGGAGATACGCAACGGGCAGAAGGCCTATGCCAGGCTACAGGGCTCAGTGGACTCTTTGAAACTGGCTTTGGGTGGCTCCATAGCCAAAGCAGGAATCCTTACCGACTGTCCGTTTCAGGGAGATACACATTTTCAGAATTCAGTTAGCGCCGATGTCAATGCCATTCTGGGTGACCACACCAAGGCTTTGATTGGCCAGCTGATCATTTTCAACCAGATTCTTGGCGAACTCCGAGAGGACATCAGGGAACAgGTAAAGGAGATGTCTCTGATTAGGAACACTATCCTGGAGTGCCAAGTGTGTGGCTTCCACGAGACCCACTCTCGCTGCGAGCCCAACCCCTGCTATAAGGGCTTGGCCTGTACAGAGACCAGGGAGTACCCAGGGTACCGTTGTGGTGCCTGCCCAGACGGCATGACGGGGAATGGCACCCACTGCCAGGACATTGACGAGTGTGCTCTAGCCCGGCCCTGTTTCTCGCCCGAGGGTTGCGTAAACACGGCAAAGGGCTTCACCTGTGAACCATGTCCCGTCGGCTTCTCCGGACCCCTCCTTAGCGGGCTTGGGGTGGAGTTTGCCAAGAGCCACAAGCAGAAGTGCAGAGATGTGGATGAGTGTGCTGACCTCTACAAGGCCTGTGTGCCGAACTCTGTCTGCATCAACACAGAGGGCTCGTTCAGGTGTGGTCCATGTAAGGAGAGCTTTGTAGGCAACCAGACGGTGGGCTGTTTCCTGCGGAGGTCCTGCGCCACGCTGGGCTTCAACCCCTGTGACGTCAACGCCCACTGTGTCATAAAGGGTGCTGCCAGGGTCTCCTGCGAGTGTAATGTGGGCTGGGCAGGTAATGGGCATACATGTGGCCCAGACACAGACATTGATGGCTACCCCGACCAACCTCTCCCCTGCATAGACAATGACTATCACTGCCGAGCCGACAACTGTGTGAACACGCCCAACTCTGGCCAGGAGGACGCAGACGGAGACGGTATAGGTGACCAGTGTGATGAGGATGCGGACGGAGACGGCATCAAGAACATGGAGGACAACTGCCGTCTGGTCCCCAACAAGGATCAACAGAACTCGGACACAGACTCGTATGGGGACACGTGTGACAACTGCCCCAACGTTTCCAACGGAAGCCAGAAGGACACAGATGGAAACGGGGCTGGGGATACCTGTGACAATGACATTGATGGGGATGGTATCCCAAACGTGCTGGACAACTGTCCCAAGGTGCCCAACCCTATGCAGACTGACCGTGACGGGGATCGAGTGGGGGACGCTTGTGACAGCTGCCCGGAAGTCAACGACCCCAtgcagTCTGATGCAGACAACGACCTGGTGGGAGATGTGTGTGACACCAACCAGGACATGGATGGGGACGGCCACCAGGATTCAAGGGACAACTGTCCAGACGTCCCTAACAGCTCCCAGCTGGACTCAGACAATGACGGCATCGGCAACGAATGCGACGATGACGACGACAACGATGGCATTCCAGATGCGAGACCTCCCGGGCCGGATAACTGTCGTCTCATCCCTAACCCCAGCCAGACAGACACTAATGGAAATGGCGTTGGTGACATGTGCGAGAATGACTTTGACAACGACTCCGTGATAGACTTGATTGACGTGTGTCCAGAGAGCGCTGAAGTCACAATGACCGACTTCAGAAACTATCAGACGGTCATCCTGGACCCGGAGGGCGATGCCCAAATCGAACCCAAGTGGATTGTGCTCAATCGGGGTATGGAAATTGTTCAAACCATGAACAGTGACCCTGGTTTGGCCATAGGCTACACAGCCTTTAACGGGGTAGACTTTGAAGGGACATTCCACATCAACACGGCCACAGACGATGACTACGTGGGCTTCATCTTCGGTTACCAGGACTCGTCCAGCTTCTACGTGGTCATGTGGAAACAGACGGCGCAGACCTACTGGCAGTCGCTGCCTTTTAGGGCCATGGCCCAGCCAGGCCTGCAACTAAAGGCAGTGAAGTCACGTACGGGTCCAGGCGAATACCTCCGGAACGCCCTGTGGCACACGGGCGACACCCCAGGCGAGGTCACGCTGCTGTGGAAGGACCCCCGGAATGTGGGCTGGAGGGACAAGACATCCTACCGCTGGCACCTCAGCCACCGCCCGCAGATGGGCTACATCAAAGTGAGGCTGTATGAAGGCATGACATTGGTGGCAGACTCGGGCGTGCTGGTGGACACCTCAATGAGGGGTGGGAGGCTGGGCGTCTTCTGCTTCTCCCAGGAGCAAATCATCTGGTCCAACCTGGGCTATCGCTGCAACGATACTGTACCAGAGGACTATGAGTTCTACCGCAAGCAGATCCACATCAGGGTGTGACTTTAAGCCTAGCACAGCATCTGTGCAGCTACATTACATCACCTGTGCCTTCGCTgtatcctgtgtgtctgtgtgtgcgcataTACATGCATACTTTTGTGTTTTTAAGGTACATTTACTTTACAGTGGTACTCTTTCTGTCTTTAACTCCACAGCAACCTTACACCTGACTACAGGTTGGCCAAGTCAAGAGTTAAAGATTGATTGACAAAATAatagtttttattattattatataaaatgacaaaataatagcttgtattattattatataaaatGAAGAATGaaagctatactgaacaaaaatgttaaCGCAAAATGCAACCATTTGAAAGATTTcacttagttacagttcatagaaggaaatcagtcaatttaaatatataaattaggccctaatttatggatttcacattactgggcaatgagcacagccatgggtgggcctggcccagccaatcagaatgagtttttcccaacAAAAAGGCTTTATCACAGGACAGAAATACTCTTCATctcctcagacgatcctgcaggtgaagaagcctgatgtggacgtcttgggctggcatggttacacgtggtctgcagttgtgaggccggttggacgtactgccaaattctctaaaattatgttggagacggtttatagtagagaaattaacattacattctctgggtAAACTCTGTtgaacatttctgcagtcagcatgacaattacacactccctcaaaacttaagacatctgtggcattgtattgtatgacaaaacagaacattttagagtggccttttcattgtccccagaacaaggtgcacctgtgtaatgagcatgctgtttaatcagcttcttaatatgccacacctatcaagTGGATTAATTATATtgacaaagaagaaatgctcactaaaagggatgtaaacaaatgtgtgcacaatttgagagaaataagctttttgtgcatatggaacatttctgggatctttctcatgaaacatgggaccaacactatacatttacatttttgttcagtatacttttaAGAAATCAAGATTGTGAAATCCCAAGGTAAAGGAcgatactgagtgtacaaaacgttaggaacaccttcctaatattgaatcaGAAGAGCCTCAagtcgtcagggcatggactctacaaagtatcgaaagccatgttgactccagtgcgtcccacagttgtgtcaagttggctggatgccctttgggtggtggacctttcttgatacacacaggaaactgttgaacgcggaaaaacccagcagcgttgcatttCTTGAATTGTTTGTCATGCCCACTCACCCTTTGAAGCGCTctaatgttcctaatgttttgtacactcagtgtatgtgtagAATGGAAAATTAAATGCATAGTTTTTTTTTAGTAGTGAATATATGTTGGAAAAATGTAAAAGCCTAATCTTAGACTTAAACTGAGCATCATGAAGGTTTCAGACTCACACTTGTCATATTACACACCACTGAATCCACTGTTAAATTGTACAATATTTCTCATGATGAAGGGTTTAACACAAGGCTGAGTTTATAATGAATTCTATACTTGTTCTTTCTATGAGGATCATCGAaaacaaaggtgtgtgtgtgtgtgttatttttgcCCAATAAGGAAATAATGCTATGCATAGCTATTACAGATATGGAAGTAATTAAAGAGAAGTACTGTATATCTCACTGACTTTTGTGAAGAATGAGATGAGACAGACCTATGTGGAAGCCTGCGAGAAACACATTTCACAGTAATAAACATCCAAATCTCCATCCA
>TU2649065
GGCTTCCACGAGACCCACTCTCGCTGCGAGCCCAACCCCTGCTATAAGGGCTTGGCCTGTACAGAGACCAGGGAGTACCCAGGGTACCGTTGTGGTGCCTGCCCAGACGGCATGACGGGGAATGGCACCCACTGCCAGGACATTGACGAGTGTGCTCTAGCCCGGCCCTGTTTCTCGCCCGAGGGTTGCGTAAACACGGCAAAGGGCTTCACCTGTGAACCATGTCCCGTCGGCTTCTCCGGACCCCTCCTTAGCGGGCTTGGGGTGGAGTTTGCCAAGAGCCACAAGCAGAAGTGCAGAGATGTGGATGAGTGTGCTGACCTCTACAAGGCCTGTGTGCCGAACTCTGTCTGCATCAACACAGAGGGCTCGTTCAGGTGTGGTCCATGTAAGGAGAGCTTTGTAGGCAACCAGACGGTGGGCTGTTTCCTGCGGAGGTCCTGCGCCACGCTGGGCTTCAACCCCTGTGACGTCAACGCCCACTGTGTCATAAAGGGTGCTGCCAGGGTCTCCTGCGAGTGTAATGTGGGCTGGGCAGGTAATGGGCATACATGTGGCCCAGACACAGACATTGATGGCTACCCCGACCAACCTCTCCCCTGCATAGACAATGACTATCACTGCCGAGCCGACAACTGTGTGAACACGCCCAACTCTGGCCAGGAGGACGCAGACGGAGACGGTATAGGTGACCAGTGTGATGAGGATGCGGACGGAGACGGCATCAAGAACATGGAGGTCA

Function

NR:

description
thrombospondin-3b-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560367.2 False 4905 mRNA 0.49 23 29283078 29318812
TU2649065 True 742 TUCP 0.59 6 29294256 29296501

Neighbor

gene id symbol gene type direction distance location
LOC110488228 LOC106570200 coding downstream 7233 29270512 ~ 29275845 (-)
LOC110488224 LOC106570199 coding downstream 152699 29110296 ~ 29130379 (-)
ssrb ssr2 coding downstream 287549 28991518 ~ 28995529 (-)
LOC118946547 NA coding downstream 290456 28992491 ~ 28992622 (-)
LOC110488223 LOC106570195 coding downstream 302404 28963143 ~ 28980674 (-)
LOC110488230 mtx1 coding upstream 2064 29320876 ~ 29348572 (-)
LOC110488232 LOC106570203 coding upstream 75035 29393847 ~ 29405283 (-)
LOC110488233 LOC106570204 coding upstream 96818 29415630 ~ 29430849 (-)
mrpl9 mrpl9 coding upstream 128906 29447718 ~ 29455521 (-)
si:dkey-266f7.9 LOC106570214 coding upstream 158583 29477395 ~ 29483561 (-)
G2316004 NA non-coding downstream 57854 29143119 ~ 29225224 (-)
G2315965 NA non-coding downstream 166125 29084832 ~ 29116953 (-)
G2315620 NA non-coding downstream 202254 29080571 ~ 29080824 (-)
G2315542 NA non-coding downstream 255920 29026949 ~ 29027158 (-)
G2315533 NA non-coding downstream 262655 29020212 ~ 29020423 (-)
G2316122 NA non-coding upstream 24498 29343310 ~ 29344210 (-)
G2316127 NA non-coding upstream 31834 29350646 ~ 29350965 (-)
G2316170 NA non-coding upstream 88424 29407236 ~ 29407488 (-)
G2316202 NA non-coding upstream 134641 29453453 ~ 29454228 (-)
G2316239 krit1 non-coding upstream 185632 29504444 ~ 29506412 (-)
G2313729 NA other downstream 2758469 26524244 ~ 26524609 (-)
G2312079 LOC106582599 other downstream 3313717 25968983 ~ 25969361 (-)
G2311141 NA other downstream 4119948 25162692 ~ 25163130 (-)
umad1 LOC106588684 other downstream 5303825 23962314 ~ 23979279 (-)
G2310415 NA other downstream 5465072 23816297 ~ 23818006 (-)
G2316235 NA other upstream 179118 29497930 ~ 29500245 (-)
G2316696 NA other upstream 715486 30034298 ~ 30039597 (-)
G2318269 NA other upstream 1816695 31135507 ~ 31135959 (-)
LOC110488289 LOC106569889 other upstream 2004576 31323368 ~ 31334791 (-)
G2318387 LOC106569884 other upstream 2026243 31345055 ~ 31352890 (-)
G2316104 NA non-coding upstream 6095 29302596 ~ 29302801 (-)

Expression


Co-expression Network