LOC110488231


Basic Information

Item Value
gene id LOC110488231
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 29369669 ~ 29376118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468369.2
ctaaacagccaacaaccactactactaaccagccaacaaccactactactaaacagccaacaaccactactactaaacaGCCAACAACCACTACTATTAAACagccaacaaccactactactaaacagccaacaaccactactactaaacaGCCAACAACCACTCCATTGGCTACAACTACGAAAGATCCCTCATTTGACAAAACCAAAGAAGGTCCAATTGGTGTTGCAACCGTCTCTACCACTATAGGCAGTGGGAAGAGAAACGATAGTGCACGCAGTACATCCAGTGCTACATCTACTTTATCTTCAGTGATAACCGATGGCTCAGGAGGAAACAACAGGACCAATACAACTTTTCCACCAACCACAAGTCATGGTGCCAGTACTTCACCTGGGAGGGTGGACTCAGCAAAAACCAGTAAGAGATCAACCACCTCCCCATCTGGCGGTTCTACTAAACGTCCCCTGAAGCCTTCCACCAGGCCTCAGTCAAGCACCACAACTAAATCTAGCACAACTGCCAACGTTGCTTCCGGGGGTAATGGTGGTGGTTTCAGAGACTGGGTACCGGGATGGGCCATTGCTCTGTTGGTGTTAGCCGCTGTCATCCTGCTACTCCTCATTATCATCTTCATCATGATGGTGGTGCGTTGGTGCTGTAAAAGGTCAAAAGATGAAAAAAAGAGCACCCCCAACATCGGCTCTTTCCCCGGACATGTCTCCCATGGCCCCCAGCCGGAGCAACCCAATGGAAAGACCTTTGAGACCATTCAGGATGAGCCCCGAAAGAAGAATAAAACAGGCATGTACATAGTGAACCCCTGAGCAGGAAGATGTGGAGGTGACATACCAACAGGCAAACTCTGGTCAACAGAACAAAAGCAGATAAGGATGAGCTACAAGCAAAATCAAATCACAGCCCCTGTAGATATGTATAGTTTATCAGGAATTTAGTATGTTATATTTTAAGAATGAAAATGATCGGAATGAATGGTttcatacttttttatttattacacTTTTGTTTGTGCATAAATATTGGGCAACCTTGCTAGTATTTGTATTACTCTATGTGACGTCATCATCTTTGACCCTGTTATCAAGGCAAACAGCATCTTTATTACATTCTGACTTGTCCATTGGTACAAAACAATATTGGTACACACATCTCAGATGTTTTGCTTTGCATCTTATGTACCTGTTCAGTTGTATAATGTTAAAGATTattgttaaaaaatatatgtaaaaatCAGAGTGCATTTCTTAATTGGTCAGATATTTGAATAGGGAGTTTACACTAATAATGTGATAACTTGCAAAATGGAAATGAATCCTAACTTGACTTGAGATCCCATTGATGTCAATGGAAGATTTGCAAAAACTCAAGTTACATGCACAGATCTTAAGTTAGTTTTGGGAGTTGAGCACTACACATCATTAGTGTCCTTGATTTCTGTGTATTGAGTTTGTGTCACATCATGTTATATACAGTTTAATAGAAGACTTCTTTGAAGTGTCCTCATTAAAGTGACAGTTCACTCCAACATCAAAGTTGCTATTTTTCTACCTTAAAAGTAGTTTCATGTAGAAATAACTACATGCTTCAAGTAATCTAATCTGAAGTCATTCAAAATGCATGCAATCCCAAGTATCCTTTGAGTTACATGAAATTTGGTTTAGGCTTTATTGATTTACAGAAATAGGATGTGGGCTGGTACAAAGTAGATTCATTAATGAAAATGCATTCAACCGCTTACCTCTGTCCGTGTAATCTACACACCCCACCCTTAAAGGAAGGATACGCCTTTTAAATGGCAACTTCATATTTATTTGAACCCAATGCAAATACCATTAACATTATGTAAGCAGACAGGTTGTTTAGCATTTGTGTGGTATGTGAGTAATGTGTGAATGACACGATGCTCCAAGAAAATTatatatctctccatccatctcactGTAAGATGCAAGTGTCGTGGAGGTGGTTGGATGAAGTACTTTGAAACATGAACTATCTTTGCATGATGAACCTGGCTGAGATCTGAAAACCTGTGCttagtatttatttttaatcattattaaatattaaattaAGATTAATGCTTTATTAAACATTGTGgcgtgttttgttttgtcttgcaaTGCATTTATTTTTACTCAAATAAAATATAT

Function

NR:

description
mucin-5AC-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468369.2 True 2174 mRNA 0.39 4 29369669 29376118

Neighbor

gene id symbol gene type direction distance location
LOC118946464 NA coding upstream 117 29366427 ~ 29369552 (+)
LOC110488226 rpc7l coding upstream 145910 29215636 ~ 29223759 (+)
LOC110488225 LOC106588560 coding upstream 154528 29169839 ~ 29271629 (+)
LOC110489420 LOC106570197 coding upstream 327238 29017561 ~ 29042431 (+)
LOC110489419 ssr2 coding upstream 378010 28983188 ~ 28994465 (+)
LOC110488235 LOC106570205 coding downstream 62795 29438913 ~ 29447508 (+)
LOC110488238 LOC106570207 coding downstream 112759 29488877 ~ 29491478 (+)
LOC110488239 krit1 coding downstream 119937 29496055 ~ 29507318 (+)
LOC110488242 LOC106570209 coding downstream 138557 29514675 ~ 29520674 (+)
LOC110489421 NA coding downstream 279793 29655911 ~ 29657071 (+)
G2315787 NA non-coding upstream 18805 29350355 ~ 29350864 (+)
G2315786 NA non-coding upstream 19653 29349460 ~ 29350016 (+)
G2315770 NA non-coding upstream 41499 29326886 ~ 29328170 (+)
G2315734 NA non-coding upstream 67711 29266542 ~ 29301958 (+)
G2315772 NA non-coding downstream 17729 29393847 ~ 29395564 (+)
G2315818 NA non-coding downstream 29957 29406075 ~ 29406429 (+)
G2315788 NA non-coding downstream 39523 29415641 ~ 29418492 (+)
G2315844 NA non-coding downstream 85194 29461312 ~ 29461623 (+)
G2315929 NA non-coding downstream 219420 29595538 ~ 29628782 (+)
G2314987 NA other upstream 666245 28698740 ~ 28703424 (+)
G2314887 NA other upstream 806074 28520255 ~ 28563595 (+)
kcng2 LOC106570224 other upstream 1322335 28016566 ~ 28047334 (+)
G2313197 NA other upstream 1875934 27493099 ~ 27493735 (+)
LOC118946485 LOC106570234 other upstream 2166858 27197844 ~ 27202811 (+)
G2316421 NA other downstream 546266 29922384 ~ 29931480 (+)
tmem79a LOC106569868 other downstream 1441910 30817937 ~ 30822555 (+)
G2317455 NA other downstream 1457612 30833730 ~ 30835101 (+)
G2317562 LOC100196669 other downstream 1721501 31097619 ~ 31127687 (+)
G2317685 LOC106569887 other downstream 1845999 31222117 ~ 31223562 (+)

Expression


Co-expression Network