LOC110488238 (LOC106570207)


Basic Information

Item Value
gene id LOC110488238
gene name LOC106570207
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 29488877 ~ 29491478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560381.2
GCTTCTCAGACTGGGGGACTCTTGGAAAATGGTCGCTTGGAAATACTGACAGCTTGTATAAAGAGAAGGATAACAACAGCTTGACCTCAGAGTCACAGACGCTAACAGCAATGGCTGAGGCCGGGCAAATCAGAAAGACAGCGGCCAAGGTGTTGGGTTGTGTGGAGAAGGTCTCCTCCTTCGCCTCGTCCATTGACCCCCTCTTCGGCATCGTCTCCTCCCTTGTGGGGGTGGTGCGCACAGGCCTGGTGGGCGAGGAGGCGCACGCCCTGGACAAGGACTTCCAGGTGGTACACGGCAAGTTGCAGAGCATCTCGGCGAAAAACCATCAGTGCCTGCGGCAGATCCGTGTAGACGAGGTCAATGAGACGTTCGGCAAGTATGAAGAGTACATCAAGCACCAGTATTCTGCCTTCAGCTCCATGGTGACGATGGTGAGGAAGGACCCAGAGGGAGCGCGGCGCCACATGGCCAACTTCGAGCGGGCCTACGAGAGGGACAAGAGTGACCTGAGCCTGGACGTGTACTACCGAGGCGTCATGGGCACCGGGTCGGTGTTTGGAAGGTCCCTGCTGAAGGTGTACCTGGAGCACTGCGACGGAGACCGCAGGGTTATGGAGCACCGGTGCTCTCACCTGGGCCACCTGTTCCACATCGGCCTGATCGCTCTCATGGCCTACACAGCGGTGACGGAGGACGACGAGGAAGAGGTGCGGGAGAAGTGGGCCAAGCGCGTGGAGGACATCCAAGCCAAGATGCAGGAGATTTTGAGCCAGtgcaaagaggaggaggggagtccGCCCTAAAGCTTGGGAAATGGGAGAGGTGGGGGCCCTGTCCAGAAATAACCCCTACTCCCAGTCCTGAAGTGCTACTGGGTGTGCAGTATGTCCTGGGTGTTTCTGCCCTGCTCGAATACATCTGATTCTACTAATCAGCTGCTCATCTTGAGCCTAATTAGCTAAACCAGATATGTTAGAGCAGGGATGGAATAAAAGCCTGCAGACCCAGTTGTTATCCAGGAGGAGGGATGGCCACCCCTGCTCTAACCCCCTTGTTAGAACTGGATAGGTACGCACAATATGGCTGTAGCTCCACCGTGCCCTCTGAGAGGCATGGTGGAATTTTTGCCAAATATTTTGCTTAGACCTGTCCAATTTATTCCGATCAACACAAGTGTCAAGGGGTAGGGGCTAAGGGTTGATTGTCGACAGGGCCAGCGATTGAAGGGAGCTTCGGTGGGTTAGAAGTAGAGTTTTGTGGTTAAAACTGTAGAGAAGTGGTTCCCACTTTCTCAGCAACCACACTCATTCAAGTGGACCAAGTAAAACAAGGAAATAATATATTATGTGTATTATGAATAGATGGAAAACCAAATTCACTGTTAAAGCAATCAAAAtacgttttgtttgtttgtccacAAAACTGCATGTTTATTTTGGTTAACTGAACTCTCTGTTATTGTGGTAATTGTTCCTAGTTTGAATTTGTGTTCATTCAGCTGCCTTatattaggctacctgccaataCTTGCTCTGGTATGGTAATCTATTATACTCTTGTCTTCAATAAAGAAGTCTAAATCATGACCAATATTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560381.2 True 1598 mRNA 0.51 2 29488877 29491478

Neighbor

gene id symbol gene type direction distance location
LOC110488235 LOC106570205 coding upstream 41369 29438913 ~ 29447508 (+)
LOC110488231 NA coding upstream 112759 29369669 ~ 29376118 (+)
LOC118946464 NA coding upstream 119325 29366427 ~ 29369552 (+)
LOC110488226 rpc7l coding upstream 265118 29215636 ~ 29223759 (+)
LOC110488225 LOC106588560 coding upstream 273736 29169839 ~ 29271629 (+)
LOC110488239 krit1 coding downstream 4577 29496055 ~ 29507318 (+)
LOC110488242 LOC106570209 coding downstream 23197 29514675 ~ 29520674 (+)
LOC110489421 NA coding downstream 164433 29655911 ~ 29657071 (+)
LOC110488243 ifi44 coding downstream 181431 29672909 ~ 29680195 (+)
LOC110489422 dus3l coding downstream 238726 29730204 ~ 29745585 (+)
G2315844 NA non-coding upstream 27254 29461312 ~ 29461623 (+)
G2315788 NA non-coding upstream 70385 29415641 ~ 29418492 (+)
G2315818 NA non-coding upstream 82448 29406075 ~ 29406429 (+)
G2315772 NA non-coding upstream 93313 29393847 ~ 29395564 (+)
G2315787 NA non-coding upstream 138013 29350355 ~ 29350864 (+)
G2315929 NA non-coding downstream 104060 29595538 ~ 29628782 (+)
G2316285 NA non-coding downstream 154704 29646182 ~ 29646446 (+)
G2316291 NA non-coding downstream 162808 29654286 ~ 29654550 (+)
G2316299 NA non-coding downstream 172538 29664016 ~ 29664316 (+)
G2316305 NA non-coding downstream 193580 29685058 ~ 29685316 (+)
G2314987 NA other upstream 785453 28698740 ~ 28703424 (+)
G2314887 NA other upstream 925282 28520255 ~ 28563595 (+)
kcng2 LOC106570224 other upstream 1441543 28016566 ~ 28047334 (+)
G2313197 NA other upstream 1995142 27493099 ~ 27493735 (+)
LOC118946485 LOC106570234 other upstream 2286066 27197844 ~ 27202811 (+)
G2316421 NA other downstream 430906 29922384 ~ 29931480 (+)
tmem79a LOC106569868 other downstream 1326550 30817937 ~ 30822555 (+)
G2317455 NA other downstream 1342252 30833730 ~ 30835101 (+)
G2317562 LOC100196669 other downstream 1606141 31097619 ~ 31127687 (+)
G2317685 LOC106569887 other downstream 1730639 31222117 ~ 31223562 (+)

Expression


Co-expression Network