LOC110488239 (krit1)


Basic Information

Item Value
gene id LOC110488239
gene name krit1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 29496055 ~ 29507318 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560382.2
TGTCAAAACGAGTCAGTCCAGGCATAATGTGACTCTTGTCTATTTCGCTTGCTGTGGTCGGCAACCGATGTTATGCTTTTAGGAAAAACAAATATCTACTTAGAAGTTTGCCTAGATTATTGATCCTGCATGTCAATGATTTATTCCACCCGGGAAAATAAAGACACCGACACCATATACTTTTTAAAGTTTGTGAGAAATCATAACATCAGACATGGTGCTCCTCATCTTCCTCATAAATCGGTCCTTATGTAGGATACCTGATAAAAATTGAAGGCAAGTCAACGCCATGGGCAACCAAGACAACTTGGAAGATGTGTTTGTAGCTGTCGTTCGTCCAAAGAACCATGTCAGTTTGAGCTCTAAGGAATATCGGGCTAAAGCCTATGAGATCCTGTTGATAGAAGTTCCTTTGGAAGGAAAAGAGAAGAAACGGAAGAAGGTCTTACTGGCGACCAAAATTCAAGCCAATGGGGACACAGCCAGATCCATTTTGGATTATGTAGAAGAAATGACTAAACCCATATCTAACAACAAGGGTTTTATTGGAAAGCGTGTGGTGCACATGAAGAAATTCCATCTCGATGGTGACAATGAAGGAAAAGAGGTCTCCCTCTTTTTTGTGCCAATTAATGTCAAAGATAATAGCAAGCCTATCTACAACCCTGGGAGCCCAAGTTTTTACTGCCTCCAGGATATCATGCGTGTGTGTAGCGAGACCAGCACTCAtttctcctccatcacctcaAAGATGCTCCTGGCCTTGGACAAGTGGCTGGTAGAGAAGCACACCATGCCTCACGCCATTGCAGCTCTGTTCCGACCCGCACCGATGGACCGAGTCAAGACCAATGTGAGTAACCCTGCATACACCAGCGAGGGCAAACCCAGTGATGGAGATTTGCACATGGGCTACACCGCCTTGGAGATCAAGAGCAAGATGCTGTCACTGGAGAAGGCCGACATGTGCATTCAAAACCCTCTCTACGGCTCAGACCTGCAGTATACCAACCGGGTGGACAAAGTTATCATCAACCCTTACTTTGGCCTTGGTGCTCCAGATTACTCTAAAATCCAGATCCCTACGAGAGAAAAGTGGCAGCACGGCTCTAACAATGTGACAGAGGAAAAGGAGCACCAGTGGGTGGATGACTTCCCCCTACACCGCAGTGCCTGTGAAGGTGACACAGATCTGCTCACCAAGCTCCTGGAAAGTGGCTTCTCAGTCAAACAGCTGGACAGCGACCACTGGGCCCCCATCCACTACGCCTGCTGGTATGGTAAAGTGGAGGCGACAAAGCTACTGCTGGAGAAGGGAAACTGTAACCCCAACCTGCTGAATGGCCAGCTGAGCTCCCTGCTGCACTTTGCAGCTGGAGGGGGCCACTCAGAGATAGTACAGCTTCTGCTCCAGCATCCTGAGATAGACCGGCACATAGAGGATCAGCAAAAGAGATCGCCCCTGCAAATCTGTGAAGAGAACAAGCAAAACGAATGGGAGGAGACAGTGAAACTCCTACAGCAAGCCAATAACAAACCATACGAGAAGGTGCGCATCTACCGCATGGACGGCTCGTACCGCTCGGTGGAGCTGAAGCACGGCAACAACACATCAGTGCAGCAGATTATGGAGGGCATGCGGCTTTCCAAGGACACCCAGCAGTACTTCACCATCTGGATCTGCTCCGAGAACCTCAaCCTGCAGCTAAAGCCCTACCACAAGCCCCTGCAGCACCTGCGTATCTGGACAGAGATCGTCACTGACCTCACTGTCCTAGACCCCCAGAGGGAGAACCCACAGCTCTTCCTCCGTAGAGATGTCCGTCTGCCCCTCGACATTGAGAAAAAGATTGAGGACCCCCTGTCCATCCTGATCCTGTTTGATGAGGCCAGACACTGCCTCCTCAAGGGCTTCTTCCCCTCCCCGGACAGCAAGCTGATCACCCTGGCCAGCCTTCTGCTGCAGATCATCTACGGAAACTATGAGAGCAAGAAGCACAAGCAGGGTTTCCTTAATGAGGAAAACCTGAAATCTATTGTCCCAATATCCAAGGTGAAAAGCAAAGCACATCATTGGACAAGCAAGATTCTTCATGAGTATAAGTGCTTCAGTATGAGTGAAGGTGTGAGCAAAGAGATGCACCACCTCCAGAGGCTCTTCCTGCAGAACTGCTGGGACATCCCAACCTATGGTGCCGCCTTCTTCACAGGCCAGGTCTTCACCAAGGCCAGCTCCAGCAACCACAAAGTCATCCGTGTCTTCGTGGGTGTCAACACCAAGGGCCTGCACCTCATGAACATGGAGACCAAGGTACTTCTTATCAGTCTGGGGTATGGCTCTTTCATGTGGCAGCTCGGGCATGCTGATCAGTACTTTCAGATTCACAGTCTGGAAAATAAGATGAATTTCATTGTGCACACCAAACAGGTAAATATAGGACCTTTCCCAAGTCATTCCAATGGATGTATCTGTGATTATGTTGAATCAATGTGTTGTAGCCTGGAAAACAGTGCAGATTGTATGATttataagaaaatatttaccataGCATATAGCTCTAACTGAAGAGTTGATTGTGGGCAATATTACATGAAATTGCTTGTA
>XM_021560383.2
GTCAAAACGAGTCAGTCCAGGCATAATGTGACTCTTGTCTATTTCGCTTGCTGTGGTCGGCAACCGATGTTATGCTTTTAGGAAAAACAAATATCTACTTAGAAGTTTGCCTAGATTATTGATCCTGCATGTCAATGATTTATTCCACCCGGGAAAATAAAGACACCGACACCATATACTTTTTAAAGTTTGTGAGAAATCATAACATCAGACATGGTGCTCCTCATCTTCCTCATAAATCGGTCCTTATGTAGGATACCTGATAAAAATTGAAGGCAAGTCAACGCCATGGGCAACCAAGACAACTTGGAAGATGTGTTTGTAGCTGTCGTTCGTCCAAAGAACCATGTCAGTTTGAGCTCTAAGGAATATCGGGCTAAAGCCTATGAGATCCTGTTGATAGAAGTTCCTTTGGAAGGAAAAGAGAAGAAACGGAAGAAGGTCTTACTGGCGACCAAAATTCAAGCCAATGGGGACACAGCCAGATCCATTTTGGATTATGTAGAAGAAATGACTAAACCCATATCTAACAACAAGGGTTTTATTGGAAAGCGTGTGGTGCACATGAAGAAATTCCATCTCGATGGTGACAATGAAGGAAAAGAGGTCTCCCTCTTTTTTGTGCCAATTAATGTCAAAGATAATAGCAAGCCTATCTACAACCCTGGGAGCCCAAGTTTTTACTGCCTCCAGGATATCATGCGTGTGTGTAGCGAGACCAGCACTCAtttctcctccatcacctcaAAGATGCTCCTGGCCTTGGACAAGTGGCTGGTAGAGAAGCACACCATGCCTCACGCCATTGCAGCTCTGTTCCGACCCGCACCGATGGACCGAGTCAAGACCAATGTGAGTAACCCTGCATACACCAGCGAGGGCAAACCCAGTGATGGAGATTTGCACATGGGCTACACCGCCTTGGAGATCAAGAGCAAGATGCTGTCACTGGAGAAGGCCGACATGTGCATTCAAAACCCTCTCTACGGCTCAGACCTGCAGTATACCAACCGGGTGGACAAAGTTATCATCAACCCTTACTTTGGCCTTGGTGCTCCAGATTACTCTAAAATCCAGATCCCTACGAGAGAAAAGTGGCAGCACGGCTCTAACAATGTGACAGAGGAAAAGGAGCACCAGTGGGTGGATGACTTCCCCCTACACCGCAGTGCCTGTGAAGGTGACACAGATCTGCTCACCAAGCTCCTGGAAAGTGGCTTCTCAGTCAAACAGCTGGACAGCGACCACTGGGCCCCCATCCACTACGCCTGCTGGTATGGTAAAGTGGAGGCGACAAAGCTACTGCTGGAGAAGGGAAACTGTAACCCCAACCTGCTGAATGGCCAGCTGAGCTCCCTGCTGCACTTTGCAGCTGGAGGGGGCCACTCAGAGATAGTACAGCTTCTGCTCCAGCATCCTGAGATAGACCGGCACATAGAGGATCAGCAAAAGAGATCGCCCCTGCAAATCTGTGAAGAGAACAAGCAAAACGAATGGGAGGAGACAGTGAAACTCCTACAGCAAGCCAATAACAAACCATACGAGAAGGTGCGCATCTACCGCATGGACGGCTCGTACCGCTCGGTGGAGCTGAAGCACGGCAACAACACATCAGTGCAGCAGATTATGGAGGGCATGCGGCTTTCCAAGGACACCCAGCAGTACTTCACCATCTGGATCTGCTCCGAGAACCTCAaCCTGCAGCTAAAGCCCTACCACAAGCCCCTGCAGCACCTGCGTATCTGGACAGAGATCGTCACTGACCTCACTGTCCTAGACCCCCAGAGGGAGAACCCACAGCTCTTCCTCCGTAGAGATGTCCGTCTGCCCCTCGACATTGAGAAAAAGATTGAGGACCCCCTGTCCATCCTGATCCTGTTTGATGAGGCCAGACACTGCCTCCTCAAGGGCTTCTTCCCCTCCCCGGACAGCAAGCTGATCACCCTGGCCAGCCTTCTGCTGCAGATCATCTACGGAAACTATGAGAGCAAGAAGCACAAGCAGGGTTTCCTTAATGAGGAAAACCTGAAATCTATTGTCCCAATATCCAAGGTGAAAAGCAAAGCACATCATTGGACAAGCAAGATTCTTCATGAGTATAAGTGCTTCAGTATGAGTGAAGGTGTGAGCAAAGAGATGCACCACCTCCAGAGGCTCTTCCTGCAGAACTGCTGGGACATCCCAACCTATGGTGCCGCCTTCTTCACAGGCCAGGTCTTCACCAAGGCCAGCTCCAGCAACCACAAAGTCATCCGTGTCTTCGTGGGTGTCAACACCAAGGGCCTGCACCTCATGAACATGGAGACCAAGGTACTTCTTATCAGTCTGGGGTATGGCTCTTTCATGTGGCAGCTCGGGCATGCTGATCAGTACTTTCAGATTCACAGTCTGGAAAATAAGATGAATTTCATTGTGCACACCAAACAGGCTGGCCTAATTGTTAAACTGTTAATGAAGTTGAGTGGACAAATGACTCCAAATGACAGAAGTTTAACAGACAAGTATGCATATGGTTGATTTACCATGTACTTTTTCCCCCATTTGTTTTGCTTTCTTGTATTGTAATTTGCTTTTTTGAGGAAAAAGTATTTTCACCAATTACATAGTTTTGTATCACAATAGAACAAGACATGTTTCACATTTGGTTTATTTGATATTAAGATTTCTGTTACATTTGACAAAGTCTTACATGCTGTAATTTTTATGGTTGTAAATAATGTGTATTTAATGATTCATTTTAATAAAATGAATACTATATGAGTGTAA
>XM_021560385.2
GAAAGCGTGTGGTGCACATGAAGAAATTCCATCTCGATGGTGACAATGAAGGAAAAGAGGTCTCCCTCTTTTTTGTGCCAATTAATGTCAAAGctcagcgttcaacaccatagtgcccacgaagcttaTCAATAAGCTATGGACCCTGGGAATAaacgcctccctctgcaactggatcctggacttcctgacgggccgcccccaggtggtaaagATAATAGCAAGCCTATCTACAACCCTGGGAGCCCAAGTTTTTACTGCCTCCAGGATATCATGCGTGTGTGTAGCGAGACCAGCACTCAtttctcctccatcacctcaAAGATGCTCCTGGCCTTGGACAAGTGGCTGGTAGAGAAGCACACCATGCCTCACGCCATTGCAGCTCTGTTCCGACCCGCACCGATGGACCGAGTCAAGACCAATGTGAGTAACCCTGCATACACCAGCGAGGGCAAACCCAGTGATGGAGATTTGCACATGGGCTACACCGCCTTGGAGATCAAGAGCAAGATGCTGTCACTGGAGAAGGCCGACATGTGCATTCAAAACCCTCTCTACGGCTCAGACCTGCAGTATACCAACCGGGTGGACAAAGTTATCATCAACCCTTACTTTGGCCTTGGTGCTCCAGATTACTCTAAAATCCAGATCCCTACGAGAGAAAAGTGGCAGCACGGCTCTAACAATGTGACAGAGGAAAAGGAGCACCAGTGGGTGGATGACTTCCCCCTACACCGCAGTGCCTGTGAAGGTGACACAGATCTGCTCACCAAGCTCCTGGAAAGTGGCTTCTCAGTCAAACAGCTGGACAGCGACCACTGGGCCCCCATCCACTACGCCTGCTGGTATGGTAAAGTGGAGGCGACAAAGCTACTGCTGGAGAAGGGAAACTGTAACCCCAACCTGCTGAATGGCCAGCTGAGCTCCCTGCTGCACTTTGCAGCTGGAGGGGGCCACTCAGAGATAGTACAGCTTCTGCTCCAGCATCCTGAGATAGACCGGCACATAGAGGATCAGCAAAAGAGATCGCCCCTGCAAATCTGTGAAGAGAACAAGCAAAACGAATGGGAGGAGACAGTGAAACTCCTACAGCAAGCCAATAACAAACCATACGAGAAGGTGCGCATCTACCGCATGGACGGCTCGTACCGCTCGGTGGAGCTGAAGCACGGCAACAACACATCAGTGCAGCAGATTATGGAGGGCATGCGGCTTTCCAAGGACACCCAGCAGTACTTCACCATCTGGATCTGCTCCGAGAACCTCAaCCTGCAGCTAAAGCCCTACCACAAGCCCCTGCAGCACCTGCGTATCTGGACAGAGATCGTCACTGACCTCACTGTCCTAGACCCCCAGAGGGAGAACCCACAGCTCTTCCTCCGTAGAGATGTCCGTCTGCCCCTCGACATTGAGAAAAAGATTGAGGACCCCCTGTCCATCCTGATCCTGTTTGATGAGGCCAGACACTGCCTCCTCAAGGGCTTCTTCCCCTCCCCGGACAGCAAGCTGATCACCCTGGCCAGCCTTCTGCTGCAGATCATCTACGGAAACTATGAGAGCAAGAAGCACAAGCAGGGTTTCCTTAATGAGGAAAACCTGAAATCTATTGTCCCAATATCCAAGGTGAAAAGCAAAGCACATCATTGGACAAGCAAGATTCTTCATGAGTATAAGTGCTTCAGTATGAGTGAAGGTGTGAGCAAAGAGATGCACCACCTCCAGAGGCTCTTCCTGCAGAACTGCTGGGACATCCCAACCTATGGTGCCGCCTTCTTCACAGGCCAGGTCTTCACCAAGGCCAGCTCCAGCAACCACAAAGTCATCCGTGTCTTCGTGGGTGTCAACACCAAGGGCCTGCACCTCATGAACATGGAGACCAAGGTACTTCTTATCAGTCTGGGGTATGGCTCTTTCATGTGGCAGCTCGGGCATGCTGATCAGTACTTTCAGATTCACAGTCTGGAAAATAAGATGAATTTCATTGTGCACACCAAACAGGCTGGCCTAATTGTTAAACTGTTAATGAAGTTGAGTGGACAAATGACTCCAAATGACAGAAGTTTAACAGACAAGTATGCATATGGTTGATTTACCATGTACTTTTTCCCCCATTTGTTTTGCTTTCTTGTATTGTAATTTGCTTTTTTGAGGAAAAAGTATTTTCACCAATTACATAGTTTTGTATCACAATAGAACAAGACATGTTTCACATTTGGTTTATTTGATATTAAGATTTCTGTTACATTTGACAAAGTCTTACATGCTGTAATTTTTATGGTTGTAAATAATGTGTATTTAATGATTCATTTTAATAAAATGAATACTATA

Function

symbol description
krit1 Acts upstream of or within several processes, including circulatory system development; endothelial cell morphogenesis; and negative regulation of endothelial cell differentiation. Predicted to be located in several cellular components, including cell junction; cytoplasm; and cytoskeleton. Predicted to be active in plasma membrane. Is expressed in head; notochord; post-vent region; posterior cardinal vein; and ventricular zone. Used to study cerebral cavernous malformation 1. Human ortholog(s) of this gene implicated in cerebral cavernous malformation and cerebral cavernous malformation 1. Orthologous to human KRIT1 (KRIT1 ankyrin repeat containing).

NR:

description
krev interaction trapped protein 1-like isoform X2

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560382.2 False 2605 mRNA 0.48 16 29496055 29506947
XM_021560383.2 False 2766 mRNA 0.47 17 29496056 29507318
XM_021560385.2 True 2331 mRNA 0.49 15 29497759 29507309

Neighbor

gene id symbol gene type direction distance location
LOC110488238 LOC106570207 coding upstream 4577 29488877 ~ 29491478 (+)
LOC110488235 LOC106570205 coding upstream 48547 29438913 ~ 29447508 (+)
LOC110488231 NA coding upstream 119937 29369669 ~ 29376118 (+)
LOC118946464 NA coding upstream 126503 29366427 ~ 29369552 (+)
LOC110488226 rpc7l coding upstream 272296 29215636 ~ 29223759 (+)
LOC110488242 LOC106570209 coding downstream 7357 29514675 ~ 29520674 (+)
LOC110489421 NA coding downstream 148593 29655911 ~ 29657071 (+)
LOC110488243 ifi44 coding downstream 165591 29672909 ~ 29680195 (+)
LOC110489422 dus3l coding downstream 222886 29730204 ~ 29745585 (+)
LOC110488250 NA coding downstream 283351 29790669 ~ 29791561 (+)
G2315844 NA non-coding upstream 34432 29461312 ~ 29461623 (+)
G2315788 NA non-coding upstream 77563 29415641 ~ 29418492 (+)
G2315818 NA non-coding upstream 89626 29406075 ~ 29406429 (+)
G2315772 NA non-coding upstream 100491 29393847 ~ 29395564 (+)
G2315787 NA non-coding upstream 145191 29350355 ~ 29350864 (+)
G2315929 NA non-coding downstream 88220 29595538 ~ 29628782 (+)
G2316285 NA non-coding downstream 138864 29646182 ~ 29646446 (+)
G2316291 NA non-coding downstream 146968 29654286 ~ 29654550 (+)
G2316299 NA non-coding downstream 156698 29664016 ~ 29664316 (+)
G2316305 NA non-coding downstream 177740 29685058 ~ 29685316 (+)
G2314987 NA other upstream 792631 28698740 ~ 28703424 (+)
G2314887 NA other upstream 932460 28520255 ~ 28563595 (+)
kcng2 LOC106570224 other upstream 1448721 28016566 ~ 28047334 (+)
G2313197 NA other upstream 2002320 27493099 ~ 27493735 (+)
LOC118946485 LOC106570234 other upstream 2293244 27197844 ~ 27202811 (+)
G2316421 NA other downstream 415066 29922384 ~ 29931480 (+)
tmem79a LOC106569868 other downstream 1310710 30817937 ~ 30822555 (+)
G2317455 NA other downstream 1326412 30833730 ~ 30835101 (+)
G2317562 LOC100196669 other downstream 1590301 31097619 ~ 31127687 (+)
G2317685 LOC106569887 other downstream 1714799 31222117 ~ 31223562 (+)

Expression


Co-expression Network