LOC110488242 (LOC106570209)


Basic Information

Item Value
gene id LOC110488242
gene name LOC106570209
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 29514675 ~ 29520674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560395.2
TGACGGACACACAGCACCAAGCAAATGAAATAGCTTTATTTGTTAGGCGGGGCCACGACTAACTTCACATCTACAGGTGGAGATGCCAAGGAAACAATACAATCTGTCACGTAATTTCATTTAGTGCTATAATGACAATGGATGAAACTATGCCTTTGGACTAAAGAGGGATTTTACTGAGCACTGGGGAACACTATTTTCTGCTAATACTAATAGCCTGGGGCCTTCTGGAAAACCGAATTAGATGTGGTAGAAGCGACACCACAACCGGGTAACAGATTTGTTGCAAATTCAAGGAGCCTGGCGCAGTAGCCTACAatattttacacatttttttaaagaaacataaGACGTAACAATGGCTATGCATTTATATCAAGTTAGTAGTATGCTAATAGAAAATACAGTCGGGAAAATGAGTGACAACTTGACATCAGTGGTCCTTGCAGTGTCTGTGATCACCCTAACGTTGGGATATATTTCTAAACTGGTGCTCAAACAGTCACAATCTTCTTCAGAAGAACACAAGAAATACCCACCATACATACCTTCTAGCATTCCATTTCTGGGTCATGCCATAGCATTTGGGAAAAGTCCCATTGAATTTCTGGAGAATGCATATGAAAAGTATGGGCCCGTTGTCAGCTTTACCATGGTGGGCAAAACCTTTACCTACCTTCTGGGTAGTGAGGCAGCCACACTGATGTTCAACAGCAAGAACGAAGATCTCAATGCAGAGGATGTCTATTCTCGATTGACCACGCCAGTTTTTGGAAAAGGGGTTGCCTACGATGTACCTAACCATATCTTCCTGGAACAGAAGAAGATGTTTAAGACAGGACTGAACATCGCCCATTTCAAACAGCACGTTGAAATTATAGAGGAGGAAACGAAGGAGTACTTTTCACGATGGGGAGACAGTGGGGAACAAAaccTGTTTGAGGCCCTGTCGGAGCTGATAATCCTGACGGCCAGTGCCTGTCTGCATGGGAAGGAGATCCGCAGCATGTTGGACGAGAAGGTGGCCCAGCTCTACGCAGACCTGGACGGGGGCTTCAGCCACGCTGCCTGGCTACTGCCCGGCTGGCTGCCCCTGCCCAGTTTCAGACGACGGGACAGAGCACACAGGGAGATCAAGAACATCTTCTACAAGGTCACCCAGAAACGCAGATGCTCTGGAGAGAAAGTGGACGATATGCTGCAGACCCTCATAGATGCCACCTACAAAGATGGGCGGCCCCTAAATGATGATGAGATAGCGGGCATGCTGATTGGTCTACTCCTGGCCGGACAGCACACATCTTCCACTACTAGTTCCTGGTTGGGCTTCTTCCTTGGCAAAGATAAGGCCCTACAGGACCGCTGCTATGCTGAACAGAAAACTGCATGTGGAGAAGACTTGCCCCCACTCAACTTTGACCAGCTGAAGGACCTGACTTTGTTGGATCGCTGTTTGAAAGAGACCCTCCGACTCCGTCCACCCATCATGACCATGATGAGAATGGCACGCTCTCCTCAGACTGTAGCAGGCTACACCATCCCAGCTGGTCACCAGGTATGTGTGTCCCCGACAGTCAACCACCGTCTGCAGGACACCTGGACAGAGAGGATGGAGTTTAGGCCTGACCGCTACCTTAATGACAACCCTGCTGCAGGGGAGAAATTTGCCTATGTGCCCTTTGGTGCAGGCCGTCACCGCTGCATCGGGGAGAACTTTGCCTACGTTCAGATCAAGACCATCTGGTCTACCATGCTGCGCCTTTACGAGTTCAACCTGGTCGATGGTTACTTCCCCACAATCAACTACACAACCATGATCCACACCCCACACAACCCCGTCATCAGATACAAGAGGAGACAACACTAAGAGACACTGAGCGCAAACACACAGCAACGAAAAGAGCAAGGCTTTGTCCAAAATGGTTTCCTAGTCTATATGGTACTACTTTTGGCTATAGCCTCATAGGGCTGGCTCTCATAaggctctggacaaaagtagtgcactatataggaaatagggagcCATTTCAGATTTGCCCCAACAACCTTACTTTTAATGGTTTTATTTAGAGAACATTATTGTACTTTAATTTAGGAACTGTTCAAATTAACGCAAAAAGTTCTGTCTGAAAATCTAATTCACTTTACTTTTTGTTGCCCCCACCTTATGTTTGCTGTGTTTTTAATTTGCTAGAATGTATTGTAagccacaggaggctggtgaggggaggacggctcatagtaatggctggaatgtattagtgtcaaacacatggaaaccacttGTTTGATGGGATACCATTCCACTTGTtcagttccagccattactatgagcccgtcctctgATTTAAAGGGACACCAGCCACCATTGATGTAAGCCTAAACTGAAACAGTTAGTTTATTCATCAAAAGCTCATCCCAGATATAGTCCAACTACCATAGGATTTGGCTATACAACACAAACCGATCTGGAACCAGGCCTCAGCTTTTGGCCGTTCTATTTCAAAATGTCATGGTAATGCATATAGCTGTCAAGCTTCCACTGTCTGAAATGTGATATGGAGTCCACTGTGTAGGAGTGAAAATACTACTGTAAGAATGAATATTACTGAGGTAAAAAGCACTTAAGCACTGCCTTTTCTAGAGCTGTGATAAATATTAAAACCACTGATCCTTATCCATTGCTTCATAGAGATCAGTGATCAAACCGACCATCACTGACTTTGTATGTACTGTCCATTCATAATTGTACAAAGATAGAGGACCTGGGCTGGGTCAAACAAAGAACAAGGACTTTAAACGGGGAGGGACAACCTGCACTTGCTTAACAAGAGACACATTTTCTGTTGTGTGCCCTAATAAACACGACTTGGCGTATCGAGTGGGAATGTTGGGAGGTCATAGTGTAGTTTGACCAATGTAGTGCCTTGATGATGGAAAATTATTACTCCATTTTATTTAGATTGATTTTACTGTTTGAAGCCTAATTTTGTGAACATTTGCACCTTTTAAATAAAAATTATATCTGAGATGATGCCATGTGAATTCCAGGAG

Function

NR:

description
lanosterol 14-alpha demethylase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K05917 CYP51; sterol 14alpha-demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560395.2 True 3054 mRNA 0.45 10 29514675 29520674

Neighbor

gene id symbol gene type direction distance location
LOC110488239 krit1 coding upstream 7357 29496055 ~ 29507318 (+)
LOC110488238 LOC106570207 coding upstream 23197 29488877 ~ 29491478 (+)
LOC110488235 LOC106570205 coding upstream 67167 29438913 ~ 29447508 (+)
LOC110488231 NA coding upstream 138557 29369669 ~ 29376118 (+)
LOC118946464 NA coding upstream 145123 29366427 ~ 29369552 (+)
LOC110489421 NA coding downstream 135237 29655911 ~ 29657071 (+)
LOC110488243 ifi44 coding downstream 152235 29672909 ~ 29680195 (+)
LOC110489422 dus3l coding downstream 209530 29730204 ~ 29745585 (+)
LOC110488250 NA coding downstream 269995 29790669 ~ 29791561 (+)
LOC118946465 NA coding downstream 501381 30022055 ~ 30027657 (+)
G2315844 NA non-coding upstream 53052 29461312 ~ 29461623 (+)
G2315788 NA non-coding upstream 96183 29415641 ~ 29418492 (+)
G2315818 NA non-coding upstream 108246 29406075 ~ 29406429 (+)
G2315772 NA non-coding upstream 119111 29393847 ~ 29395564 (+)
G2315787 NA non-coding upstream 163811 29350355 ~ 29350864 (+)
G2315929 NA non-coding downstream 74864 29595538 ~ 29628782 (+)
G2316285 NA non-coding downstream 125508 29646182 ~ 29646446 (+)
G2316291 NA non-coding downstream 133612 29654286 ~ 29654550 (+)
G2316299 NA non-coding downstream 143342 29664016 ~ 29664316 (+)
G2316305 NA non-coding downstream 164384 29685058 ~ 29685316 (+)
G2314987 NA other upstream 811251 28698740 ~ 28703424 (+)
G2314887 NA other upstream 951080 28520255 ~ 28563595 (+)
kcng2 LOC106570224 other upstream 1467341 28016566 ~ 28047334 (+)
G2313197 NA other upstream 2020940 27493099 ~ 27493735 (+)
LOC118946485 LOC106570234 other upstream 2311864 27197844 ~ 27202811 (+)
G2316421 NA other downstream 401710 29922384 ~ 29931480 (+)
tmem79a LOC106569868 other downstream 1297354 30817937 ~ 30822555 (+)
G2317455 NA other downstream 1313056 30833730 ~ 30835101 (+)
G2317562 LOC100196669 other downstream 1576945 31097619 ~ 31127687 (+)
G2317685 LOC106569887 other downstream 1701443 31222117 ~ 31223562 (+)

Expression


Co-expression Network