LOC110489421



Basic Information


Item Value
gene id LOC110489421
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 29655911 ~ 29657071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>LOC110489421
ATGTCATGTCTCGACCGTGTTGAAGATTACATTAATGCCGGGCATGCTAGGCCTTCACAGAACCCTGTACCAGCTTTTAGCCACTTTGTTGCATCTCCTGCCCAGCTGACCTCTGTCGGTCTTCCCAGGGGTCTTTGCACCGTCACTCCAAATGTCAGCGACTCGAAGCCTTGAGTGAGACTTGAGAATGAGTCCCTGCTGGAGAGCTTGACCTTCATGTGGTGGACGTGAAGATGGGGCGCCAGTGCCAACCGGGGGTGCTCCGCAAGGTCATCACCAATGAGCAAGGTCTGGCTCACTTCCTCAATGGCAAAGGCGCCAGCCGGAAAGTGGTGACCGGCATCATCTCCTGGTACCCATGCACCATCACTTTTTCAGGCGAGCACCTGGAGCAACACTGGCCGATGTGGCGAAGTGTCTTCAAGAGCGACAGTGAGATCATCAGCATCCTGGACCGCTTGCCCGAGTCCTCCTTCAGCTCTAGCGAAAACAACAACCTggagatttgatttgaagattttATTTCCTGGGCTCGCTGGGCCGCCAAGGACCTCAACCACCTGCTGACTACGGCGCTGTGGACCTTCTCCAACAGTGTCGAGCTCAACCACCCTCGGTGGAGTTCCTGGAAGACGTGTGCGCCGAGTTGGGTGGGGAGGGCCCTGGGCAGTTTGCCAAGTCGGTGGTTTCTCGAAACCTCTACATCCTCATCCACAGCACCAAGAGGGTGAAGGCAAACATTGACTTCCTAAGGCTTCTTTCAAGATGAGTGACCCGGAGCTGCTGGCTCTGCTGCAGGGTGCCTGAGAAAAAATCCTGGACCTCTCTAACGAGTACCTGAAGAGAAACCTAAAGAGGCTTCAGGAGAAGCTGGCGTCCCTCGGCTGTCGGAAAGTTGACATCAAGAAACTGATGGTCTGCTACCCCACTGTGCTGTTCATCAGGCCGGATACGCCGAGCTCCAAACTGGACTGACTGTCTGTTAAAGGGAGGGATCACTATGAAGCAGATCCTGGAGAAAGTCCTGAAGTATCAGGGCGACTAGAGGAGCTGTATAAGCTCCGGTATGACTTTGAAAAGAACGGCATCAACATTCTGGACACAAGCCAATAAAGATACGACCCCAAGTTGGAAAGACTGGCTCTCTCGTCAGAGGAATGA

Function


NR:

description
Transcription termination factor, mitochondrial precursor

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
LOC110489421 True 1161 mRNA 0.54 1 29655911 29657071

Neighbor


gene id symbol gene type direction distance location
LOC110488242 LOC106570209 coding upstream 135237 29514675 ~ 29520674 (+)
LOC110488239 krit1 coding upstream 148593 29496055 ~ 29507318 (+)
LOC110488238 LOC106570207 coding upstream 164433 29488877 ~ 29491478 (+)
LOC110488235 LOC106570205 coding upstream 208403 29438913 ~ 29447508 (+)
LOC110488231 NA coding upstream 279793 29369669 ~ 29376118 (+)
LOC110488243 ifi44 coding downstream 15838 29672909 ~ 29680195 (+)
LOC110489422 dus3l coding downstream 73133 29730204 ~ 29745585 (+)
LOC110488250 NA coding downstream 133598 29790669 ~ 29791561 (+)
LOC118946465 NA coding downstream 364984 30022055 ~ 30027657 (+)
LOC118946498 NA coding downstream 374536 30031607 ~ 30032059 (+)
G2316291 NA non-coding upstream 1361 29654286 ~ 29654550 (+)
G2316285 NA non-coding upstream 9465 29646182 ~ 29646446 (+)
G2315929 NA non-coding upstream 27129 29595538 ~ 29628782 (+)
G2315844 NA non-coding upstream 194288 29461312 ~ 29461623 (+)
G2315788 NA non-coding upstream 237419 29415641 ~ 29418492 (+)
G2316299 NA non-coding downstream 6945 29664016 ~ 29664316 (+)
G2316305 NA non-coding downstream 27987 29685058 ~ 29685316 (+)
G2316319 NA non-coding downstream 49481 29706552 ~ 29706846 (+)
G2316323 NA non-coding downstream 59185 29716256 ~ 29716471 (+)
G2316328 NA non-coding downstream 65306 29722377 ~ 29722596 (+)
G2314987 NA other upstream 952487 28698740 ~ 28703424 (+)
G2314887 NA other upstream 1092316 28520255 ~ 28563595 (+)
kcng2 LOC106570224 other upstream 1608577 28016566 ~ 28047334 (+)
G2313197 NA other upstream 2162176 27493099 ~ 27493735 (+)
LOC118946485 LOC106570234 other upstream 2453100 27197844 ~ 27202811 (+)
G2316421 NA other downstream 265313 29922384 ~ 29931480 (+)
tmem79a LOC106569868 other downstream 1160957 30817937 ~ 30822555 (+)
G2317455 NA other downstream 1176659 30833730 ~ 30835101 (+)
G2317562 LOC100196669 other downstream 1440548 31097619 ~ 31127687 (+)
G2317685 LOC106569887 other downstream 1565046 31222117 ~ 31223562 (+)

Expression



Co-expression Network