LOC110488243 (ifi44)


Basic Information

Item Value
gene id LOC110488243
gene name ifi44
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 29672909 ~ 29680195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560396.2
CAACCCCTCAATATTTTTCACCGGCCCGCCACACACTCTGGGGACTGGGTAGATACGGACTGGAGGGGACAATAATCAACATGTTGAATTGGAAAAGGCCACCACTCAAGGTGGTCCCTGAACACACTGCTGGGACAGCAGGCGCTGCTTGGCTACTGGCAGTTTTCAGGGTGTTTTAGCTTTAGAAGTTGAATTTATAAAAGTGAAAGTGAAATTTAAGACTCCAGAGGACTCCCAATCGTGTGCAACTGCAGCCCGTAATTCGGGGCGTTTATGCATGTGGGAATTCCTGCACCGTTTCTTCCTCTTTTGGAAAGTCCCTGAAATGTAGACAGCCTCCTTTTCATAAGACAAGGACAGAATGTTTTTACTCTGGTTGGTTGCCTAAACGGAGAGACATACAGTCCATCTGAATAATTTGCAGGAGTCTTTCCTACCAAACCTCCTAGGTGTCATCATGAGTGTGGTAACATCCAGTCTATCAGGTGATCAGGAGAAGAAACTGCTTTCTCTGTTCGGCCATGTCCGACTCAGTCTGCTGTACAAAGCCAGTGTCCAAGGCTACACGGCAGCTGCCTTTCACGCACGCTGCAACAGCCAGGGACCCACTTTAGTCGCTGCCTACAACAAGGCTGGCTTCCTGTTCGGAGCCTACACCAGCAAAGACTACACTCAGAATGGGCAGCCTATTAATGACGACAAAGCCTTCCTCTACAGCATCAATGACGAAAGAAAAAATCCACTGCGTGTGTCTAGTGCCAATGGCCAGTATGGTTTCACAGATGAAAACACTGGCCCGAATTTTGGTGCCTTGGTATTTCTGTTCAATGACACAGCTACAGTCCAATATAACGCAGGGAACAGCTATAACTTTGAGGCAGCACATATGCATGGCGACGACTTGCAGCTGACTGAATGTGAGGTTTACAGAGTGGAGGAATTGGGAGGTTGTTTGACAAAGACTTGGAGAAACATGCAGTGGACCTCTGAGAGGAAACGGCAGTTGAAGGAGAAAATCAAGAACTATAAGCCTGATGTCAAGTCAGTGAGTCAGGCCCGGGTTCTCCTCGTGGGTCCTGTTGGGGCTGGCAAGTCCAGCTTCTTCAACTCTGTCAACTCTATCTTCAGAGGAAACATGACCAGTCAGGCCATCTGTGGCAGCGCAGGCACCAGCCTGACCACCCAGTTCCGTACCTTCACCATCAAGTCGGGGAAGAGTGGTGAGCCTATACCCCTGATCCTGTGTGACACCATGGGACTGGAGGAGGCGTCAGGAGCTGGCTTGGACATGGAGGACATAGTCAACATTTACAAAGGCCATGTTCAGGACCGTTACCAGTTTAATCCCATGACACCCTTGAGTGAAGATGTACCTGGGTATCGTAAGCATGTCAGTCTGAAGGATCAGATCCACTGTGTAGTGTACGTGGTGGACGCCTGCAGAGTCTCTCTGATGTCTGCCAAAATTGTGGAGAAGTTTGCCGCCATTCGCAAGAAGACCAATCAGATAGGTATTCCCCAACTGGTGTTAATGACCAAAGTGGACGAGGCCTGCCCCCTAGTGTCAGAAGATCTACAGAATGTTTATATGAGCCATTACATACAAAGGAAGATCCAGGAGTTGAGTGCATTCCTGTGTCCGGTATTCTGCCAGTGAAGAACTACAGCCAGGAGCTGGAGCTGAATCAGAACACTGATATCCTGATACTCAGTGCTCTGGATCAGATGTTGAACTATGCTGACAGCTTCTTTGAAAACCAGCCTGAGGAGGAAAAGGAAGAGCTCTAACCCTCTTCACAGTCCCACTGTCAAGTGTCAATACTCTGAagacaaaaatgttttttttttgcaatccCATATTATTTTGTAACTGTGCAAGATATCCATATTATTTTGGTACAAGTTATCATGCAAGTGGACATTATCATTATTTTTTGTGGATATTATAACACGTTGCTCTTTCTTACTGCTATCTTTACTTAGACAATTGTTTTGTGAGCTTTTCACGTGACATGAAAAACACCTGGCCCTAATGTTCCTTTAACACCTTGATTCAGTTTGTGATAGAGCTTTGATGTGACAGTGCAAAGCAAATTCAAGGTCGCGTTTGCCTTCTTTCAAGCAGTAGTAACGTACCTAAACAAAGCATGCATGTACCAATGCAAATGGACTGTTCCCCAATTGAGTAAAGGGTTAAAGGGAAAGGGTGGGGCCTAGTGAATAATCTTCTGACAAAGCAACTCTACCTGTGGACTGTTTGAAGCGTGGGAAAATAATCTATTTACTCTCTCTATAAGCGAATGTCTATTGTATGCAAGTGCCCCAGAGCAGAGTAAAGTTGCATCACTGTAATTTGAAAGCATTGTTTATGTAGAGAGTTTTAACCTAATATCGTATGTTATTAATTCTATTCTTGGTAACGCTTTAGGCTTGGGTGATGACACAATgcactgcattgttggttgatTGACAAATTGAGTTGTTGTCCAGAGGACGATATATTGCCTTTCTGTGGCTCCTGTCGCCATATTCACTGAACTAAGATAAGACGCAACATGACCAATTCAGAGTGCCACAGTGTGTGCATTCAAAAACAATCAACATAAAACATGAGATAAAGAGAGGTGTGGAGTCCTTGGAGTTACTACTGTAAATTGGaaagtaaacaaaaacaaaggaCTTATTTGACAGGTGTTTTCAAGTTAATGTCTCCGCATGGTATGTAATTATGATATTTCACACATTCTAAAACCACTAAAATCATCTCTCACAGATGCATgtgcacacatatatacacacacacacacaggtagtttCACGTTTGTGGTTATTTGTTTCATATATAATGTTTCCTATATTGTTCAATACATTGATCCAATCACATTTCCTGTTGTGCATTCCAGAGATGTTACATGCAGTATGAATAATAAAGATGACAAAAGTTTCCTCTGAGCTTGGTCAAATGAGAACAAGAATGCAATATTAGTACATTTCATGCATTTGGAAATAAGCATATATTTCCAATGTCTTTGAAATTCCAGACAAGAATGCAACATTATATGCCAGTGGTTCTTTTATGCACCAAATCCCACAAACAAGCAGACATTAGAAATTATAAGGATTCATGCATGAGTAGGCAGACACAGACCCTCCTTTATATTGTGACCAAAGCTGGTTGGTACATTGAACCTATTGACTGCCACTCTGAAGGTTAAGTGAAAGGTAAATCAGACACTGCCACTACCACTACGTTTAAGCAAAGCGGACATAACTCACCGGCTATTAGATGACAGAGGGTCTGGTATCATGCAGTTTCCTGCCTGTGAAAAACCTATTTGTCTCAAAGCCATTTATCACAAAGCAGTTGACCTTTTCTAGACTAGAAATGGGTCATACAGGAGTGGCCATCTTTGAATGGGCATTTGTTGATTTACCTTGAAGATCtggaataaaatgttatttgtagaGATACATTAA
>XR_002468371.2
AACCCCTCAATATTTTTCACCGGCCCGCCACACACTCTGGGGACTGGGTAGATACGGACTGGAGGGGACAATAATCAACATGTTGAATTGGAAAAGGCCACCACTCAAGGTGGTCCCTGAACACACTGCTGGGACAGCAGGCGCTGCTTGGCTACTGGCAGTTTTCAGGGTGTTTTAGCTTTAGAAGTTGAATTTATAAAAGTGAAAGTGAAATTTAAGACTCCAGAGGACTCCCAATCGTGTGCAACTGCAGCCCGTAATTCGGGGCGTTTATGCATGTGGGAATTCCTGCACCGTTTCTTCCTCTTTTGGAAAGTCCCTGAAATGTAGACAGCCTCCTTTTCATAAGACAAGGACAGAATGTTTTTACTCTGGTTGGTTGCCTAAACGGAGAGACATACAGTCCATCTGAATAATTTGCAGGAGTCTTTCCTACCAAACCTCCTAGGTGTCATCATGAGTGTGGTAACATCCAGTCTATCAGGTGATCAGGAGAAGAAACTGCTTTCTCTGTTCGGCCATGTCCGACTCAGTCTGCTGTACAAAGCCAGTGTCCAAGGCTACACGGCAGCTGCCTTTCACGCACGCTGCAACAGCCAGGGACCCACTTTAGTCGCTGCCTACAACAAGGCTGGCTTCCTGTTCGGAGCCTACACCAGCAAAGACTACACTCAGAATGGGCAGCCTATTAATGACGACAAAGCCTTCCTCTACAGCATCAATGACGAAAGAAAAAATCCACTGCGTGTGTCTAGTGCCAATGGCCAGTATGGTTTCACAGATGAAAACACTGGCCCGAATTTTGGTGCCTTGGTATTTCTGTTCAATGACACAGCTACAGTCCAATATAACGCAGGGAACAGCTATAACTTTGAGGCAGCACATATGCATGGCGACGACTTGCAGCTGACTGAATGTGAGGTTTACAGAGTGGAGGAATTGGGAGGTTGTTTGACAAAGACTTGGAGAAACATGCAGTGGACCTCTGAGAGGAAACGGCAGTTGAAGGAGAAAATCAAGAACTATAAGCCTGATGTCAAGTCAGTGAGTCAGGCCCGGGTTCTCCTCGTGGGTCCTGTTGGGGCTGGCAAGTCCAGCTTCTTCAACTCTGTCAACTCTATCTTCAGAGGAAACATGACCAGTCAGGCCATCTGTGGCAGCGCAGGCACCAGCCTGACCACCCAGTTCCGTACCTTCACCATCAAGTCGGGGAAGAGTGGTGAGCCTATACCCCTGATCCTGTGTGACACCATGGGACTGGAGGAGGCGTCAGGAGCTGGCTTGGACATGGAGGACATAGTCAACATTTACAAAGGCCATGTTCAGGACCGTTACCAGTTTAATCCCATGACACCCTTGAGTGAAGATGTACCTGGGTATCGTAAGCATGTCAGTCTGAAGGATCAGATCCACTGTGTAGTGTACGTGGTGGACGCCTGCAGAGTCTCTCTGATGTCTGCCAAAATTGTGGAGAAGTTTGCCGCCATTCGCAAGAAGACCAATCAGATAGGTATTCCCCAACTGGTGTTAATGACCAAAGTGGACGAGGCCTGCCCCCTAGTGTCAGAAGATCTACAGAATGTTTATATGAGCCATTACATACAAAGGAAGATCCAGGAGTTGAGTGCATTCCTGTGTCCGGTATTCTGCCAGTGAAGAACTACAGCCAGGAGCTGGAGCTGAATCAGAACACTGATATCCTGATACTCAGTGCTCTGGATCAGATGTTGAACTATGCTGACAGCTTCTTTGAAAACCAGCCTGAGGAGGAAAAGGAAGAGCTCTAACCCTCTTCACAGTCCCACTGTCAAGTGTCAATACTCTGAagacaaaaatgttttttttttgcaatccCATATTATTTTGTAACTGTGCAAGATATCCATATTATTTTGGTACAAGTTATCATGCAAGTGGACATTATCATTATTTTTTGTGGATATTATAACACGTTGCTCTTTCTTACTGCTATCTTTACTTAGACAATTGTTTTGTGAGCTTTTCACGTGACATGAAAAACACCTGGCCCTACATTGATCCAATCACATTTCCTGTTGTGCATTCCAGAGATGTTACATGCAGTATGAATAATAAAGATGACAAAAGTTTCCTCTGAGCTTGGTCAAATGAGAACAAGAATGCAATATTAGTACATTTCATGCATTTGGAAATAAGCATATATTTCCAATGTCTTTGAAATTCCAGACAAGAATGCAACATTATATGCCAGTGGTTCTTTTATGCACCAAATCCCACAAACAAGCAGACATTAGAAATTATAAGGATTCATGCATGAGTAGGCAGACACAGACCCTCCTTTATATTGTGACCAAAGCTGGTTGGTACATTGAACCTATTGACTGCCACTCTGAAGGTTAAGTGAAAGGTAAATCAGACACTGCCACTACCACTACGTTTAAGCAAAGCGGACATAACTCACCGGCTATTAGATGACAGAGGGTCTGGTATCATGCAGTTTCCTGCCTGTGAAAAACCTATTTGTCTCAAAGCCATTTATCACAAAGCAGTTGACCTTTTCTAGACTAGAAATGGGTCATACAGGAGTGGCCATCTTTGAATGGGCATTTGTTGATTTACCTTGAAGATCtggaataaaatgttatttgtagaGATACATTAA

Function

symbol description
ifi44 Predicted to be involved in immune response. Predicted to act upstream of or within response to bacterium. Predicted to be located in cytoplasm.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560396.2 False 3477 mRNA 0.43 8 29672909 29680195
XR_002468371.2 True 2641 mRNA 0.45 9 29672910 29680195

Neighbor

gene id symbol gene type direction distance location
LOC110489421 NA coding upstream 15838 29655911 ~ 29657071 (+)
LOC110488242 LOC106570209 coding upstream 152235 29514675 ~ 29520674 (+)
LOC110488239 krit1 coding upstream 165591 29496055 ~ 29507318 (+)
LOC110488238 LOC106570207 coding upstream 181431 29488877 ~ 29491478 (+)
LOC110488235 LOC106570205 coding upstream 225401 29438913 ~ 29447508 (+)
LOC110489422 dus3l coding downstream 50009 29730204 ~ 29745585 (+)
LOC110488250 NA coding downstream 110474 29790669 ~ 29791561 (+)
LOC118946465 NA coding downstream 341860 30022055 ~ 30027657 (+)
LOC118946498 NA coding downstream 351412 30031607 ~ 30032059 (+)
LOC118946528 NA coding downstream 396955 30077150 ~ 30077764 (+)
G2316299 NA non-coding upstream 8593 29664016 ~ 29664316 (+)
G2316291 NA non-coding upstream 18359 29654286 ~ 29654550 (+)
G2316285 NA non-coding upstream 26463 29646182 ~ 29646446 (+)
G2315929 NA non-coding upstream 44127 29595538 ~ 29628782 (+)
G2315844 NA non-coding upstream 211286 29461312 ~ 29461623 (+)
G2316305 NA non-coding downstream 4863 29685058 ~ 29685316 (+)
G2316319 NA non-coding downstream 26357 29706552 ~ 29706846 (+)
G2316323 NA non-coding downstream 36061 29716256 ~ 29716471 (+)
G2316328 NA non-coding downstream 42182 29722377 ~ 29722596 (+)
G2316335 NA non-coding downstream 47728 29727923 ~ 29728128 (+)
G2314987 NA other upstream 969485 28698740 ~ 28703424 (+)
G2314887 NA other upstream 1109314 28520255 ~ 28563595 (+)
kcng2 LOC106570224 other upstream 1625575 28016566 ~ 28047334 (+)
G2313197 NA other upstream 2179174 27493099 ~ 27493735 (+)
LOC118946485 LOC106570234 other upstream 2470098 27197844 ~ 27202811 (+)
G2316421 NA other downstream 242189 29922384 ~ 29931480 (+)
tmem79a LOC106569868 other downstream 1137833 30817937 ~ 30822555 (+)
G2317455 NA other downstream 1153535 30833730 ~ 30835101 (+)
G2317562 LOC100196669 other downstream 1417424 31097619 ~ 31127687 (+)
G2317685 LOC106569887 other downstream 1541922 31222117 ~ 31223562 (+)

Expression


Co-expression Network