LOC110488250


Basic Information

Item Value
gene id LOC110488250
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 29790669 ~ 29791561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971688.1
TTTCTTCCACAACCGCATATCCGACAACTGCTGAtcttattacaacaacaacaactgcagctcctacggcaacaactgtagctccaacgacaactgcagctccaacgacaactgcagctccaacgACAACTACAACTGCAGTACCTAATACTATGACTACAACTACAGACCCTactacaactgtagctcctacggaCACTACAAAGGTAACACCTACAATGACCACTGTAGCTCCCACGCCACCTGCAACTCCTACGACAACTGAAGCTCTGATAACAACTGCTGTTCCcacgaccactacaactccaaAACCTACTACGACAGAACCTACTCCCACGACTGCTACGACTGCAGAACCTAccacgacaaccagtgcagctcctacaacaacaactgttGTTCTTACGACAGCAacgactgcagcaccttctacaacaactacaacttcagctcctacgacaaccacaacagcagcaactacaacaactgtagctcccacgacaactgtagctcctacaacaacaactgctgttcttaCGACAGCAacgactgcagcaccttctacaacaactacaacttgtGCTcatacgacaaccacaacagcaacacctactacaacacctgcagttccaacaactgtagctcccatgACCACTACACTTGCTGTACTgactacaacaaccacaactgcagctcctgctacaacaattgtagcttctacgtcaaccacagcagctgcctctacgacaactgctgctccaacgaccactacaattccagaacctattacgacaaccactgcagttCCTGCAACAACAACTGCTATTCTTACAACCACAgcgactgcagcaccttctacaacaactacaacttcagcgcctacgacaaccaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971688.1 True 893 mRNA 0.48 1 29790669 29791561
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489422 dus3l coding upstream 45084 29730204 ~ 29745585 (+)
LOC110488243 ifi44 coding upstream 110474 29672909 ~ 29680195 (+)
LOC110489421 NA coding upstream 133598 29655911 ~ 29657071 (+)
LOC110488242 LOC106570209 coding upstream 269995 29514675 ~ 29520674 (+)
LOC110488239 krit1 coding upstream 283351 29496055 ~ 29507318 (+)
LOC118946465 NA coding downstream 230494 30022055 ~ 30027657 (+)
LOC118946498 NA coding downstream 240046 30031607 ~ 30032059 (+)
LOC118946528 NA coding downstream 285589 30077150 ~ 30077764 (+)
LOC118946499 NA coding downstream 308140 30099701 ~ 30100390 (+)
LOC110489425 LOC106569855 coding downstream 316655 29817983 ~ 30125310 (+)
G2316343 NA non-coding upstream 28292 29761730 ~ 29762377 (+)
G2316355 NA non-coding upstream 47381 29743037 ~ 29743288 (+)
G2316340 NA non-coding upstream 54273 29736145 ~ 29736396 (+)
G2316339 NA non-coding upstream 54691 29735624 ~ 29735978 (+)
G2316335 NA non-coding upstream 62541 29727923 ~ 29728128 (+)
G2316349 NA non-coding downstream 16100 29807661 ~ 29817565 (+)
G2316350 NA non-coding downstream 21386 29812947 ~ 29815841 (+)
G2316352 NA non-coding downstream 23151 29814712 ~ 29837145 (+)
G2316421 NA non-coding downstream 132411 29922384 ~ 29931480 (+)
G2314987 NA other upstream 1087245 28698740 ~ 28703424 (+)
G2314887 NA other upstream 1227074 28520255 ~ 28563595 (+)
kcng2 LOC106570224 other upstream 1743335 28016566 ~ 28047334 (+)
G2313197 NA other upstream 2296934 27493099 ~ 27493735 (+)
LOC118946485 LOC106570234 other upstream 2587858 27197844 ~ 27202811 (+)
tmem79a LOC106569868 other downstream 1026467 30817937 ~ 30822555 (+)
G2317455 NA other downstream 1042169 30833730 ~ 30835101 (+)
G2317562 LOC100196669 other downstream 1306058 31097619 ~ 31127687 (+)
G2317685 LOC106569887 other downstream 1430556 31222117 ~ 31223562 (+)

Expression

LOC110488250 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

LOC110488250 Expression in each Bioproject

Bar chart with 12 bars.
LOC110488250 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.

Co-expression Network