LOC110489445


Basic Information

Item Value
gene id LOC110489445
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 30735898 ~ 30738385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562151.2
TCAGTGCAGGACTCGGCAGAAGGATTTTACATTAACACTTATATTCTAAACTGGTAATCATACAGGCCTTGTGCGATGTGATTTCCTTAAAATGGCTTCCATAGTATCTCTCCCAGAGGGGAATCTCTCCTGTTCTGTGTGCCGTGACATCTTCAAGGACCCGGTCATCCTGTCATGTAGACACGGCATCTGTAAAGTCTGCTTGTTGGAACTGTGGAAACATAACGACGTGCTGGAATGCCCTCTCTGTAGAAGAAGATCATCGCTGGAGCTTCCACTTGATCTGAATCTGAAGAGGCAGTGTGAGGCTGTCTTACAGGAGAGGAGTCGGGGAGATAcgactgagtctgaggtgctctGCAATCTGCATAATGAGAAGCTTGAGctcttctgtctggaggataaaCAGCTACTGTGTTTAAAGTGTAGGGCCTTAAAGAAAAACACCAACGACGGCCTTTGTCAGATCGATAAAGCTGCTAAGAATTATAAGGAGAAACTCCAAACTGCACTAAAATCCTTACAGGGAAACCTGAAGGCCTTTAACAAAGTTATACAATCCTGTGATCAAGCAGCAGAAAATATTAAGAGCCAGGCTCAGCACACAGAGAAGCAGATTAAGAAGGAGTTTGAAAAGCTTCATCAGTTTCTAAGAGATGAAGAGGCAGATAGTATAGCTGCACTgcgggaggaagaggagcagaggAATAAGACGGTGAGGGAGAAGATTGAAGAGATGTGCAGAGAGATATCATCACTGTCTGAAACAATcagagccattgaagaggagctAAGAGCTGAAGACATCTCATTCTTGCAGAACTACAAGGTCACAATGAAAAGAACCCAGTACACAATGCCGGATCTAGAGAGGGTTTCAGGTCCACTTATCAATGTGGCAAAGCACCTGGGAAACCTGCAGTTCAAAGTCTGGGAGAAGATGCAGGAGATTGTTCAATATACTCCTGTGACTCTGGACCCCAATACTGCCCATCCGCGTCTCCGCCTGTCTGAAGATCTGACCAGTGTGAGAGACAGTGATGATATACAGTGGCTTCCTGTCAACCCAGAGAGGTTTGATCACCTCCAGTTTGTCCTGGCCTCTGAGGGCTTTAACTCAGGGACACACAGCTGGCTTGTTGAGGTTGGGGAGAGTGAAAACTGGACCATAGGTGTGATCACAGACTCTGTCCAGAGGTCTGGATTGATAAAGAGTGGATACTGGAGTGTCGGATATTACGAAGGTAAATACTGGGCATTATGCCCACCTGTTCCACCCACTGATATCACATTGAGACAGAAACCTAAGCAGATCAGAGTGCATCTGGACTGTGACAGAGGAAAGCTGTCATTCTCGGACCCTGATAATAACACACGTCTACACGCGTTCACACAACATTTCACAGAGAGAGTCTCTCCATTTATTGGTAATTACTGTGAACTCCACTCTCTAAAGATCTTACCACTGAAGGTCTCTGTAACAGTGGTTTAGCAGAGTTAGATGGTACTGCATCCGTCTAAATCAGTGAACAAGTTCACTACAGGTAATCAATCTCATTATTATAGAGAAGTAATGTTTTCAATGGAATGGACTGTTTCACTTTTCCACTATTGAGAATCAATACTGATGTTTTTGGCTCATTAACTATTAGCATCTTTGCCAACATTCATTTCTAATAA

Function

NR:

description
zinc-binding protein A33-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562151.2 True 1680 mRNA 0.44 6 30735898 30738385

Neighbor

gene id symbol gene type direction distance location
LOC110488253 LOC106569864 coding upstream 190904 30509313 ~ 30544994 (+)
LOC110488252 LOC106569863 coding upstream 511256 30191475 ~ 30224642 (+)
LOC110488251 LOC106570151 coding upstream 551984 30178624 ~ 30183914 (+)
LOC110489425 LOC106569855 coding upstream 610588 29817983 ~ 30125310 (+)
LOC118946499 NA coding upstream 635508 30099701 ~ 30100390 (+)
tmem79a LOC106569868 coding downstream 79552 30817937 ~ 30822555 (+)
LOC118946481 NA coding downstream 150425 30888810 ~ 30898886 (+)
LOC110488270 LOC106569874 coding downstream 359166 31097551 ~ 31103860 (+)
LOC110488269 LOC100196669 coding downstream 382529 31120914 ~ 31127679 (+)
LOC110488267 NA coding downstream 405155 31143540 ~ 31146770 (+)
G2317316 NA non-coding upstream 117239 30601170 ~ 30618659 (+)
G2317221 NA non-coding upstream 260215 30475470 ~ 30475683 (+)
G2317217 NA non-coding upstream 261977 30473716 ~ 30473921 (+)
G2317205 NA non-coding upstream 270493 30464958 ~ 30465405 (+)
G2317052 NA non-coding upstream 371046 30364545 ~ 30364852 (+)
G2317419 NA non-coding downstream 15794 30754179 ~ 30754389 (+)
G2317420 NA non-coding downstream 16890 30755275 ~ 30755566 (+)
G2317436 NA non-coding downstream 42111 30780496 ~ 30780730 (+)
G2317441 NA non-coding downstream 48957 30787342 ~ 30787597 (+)
G2317394 NA non-coding downstream 51288 30789673 ~ 30794828 (+)
G2316421 NA other upstream 804947 29922384 ~ 29931480 (+)
G2314987 NA other upstream 2032474 28698740 ~ 28703424 (+)
G2314887 NA other upstream 2172303 28520255 ~ 28563595 (+)
kcng2 LOC106570224 other upstream 2688564 28016566 ~ 28047334 (+)
G2313197 NA other upstream 3242163 27493099 ~ 27493735 (+)
G2317455 NA other downstream 95345 30833730 ~ 30835101 (+)
G2317562 LOC100196669 other downstream 359234 31097619 ~ 31127687 (+)
G2317685 LOC106569887 other downstream 483732 31222117 ~ 31223562 (+)
LOC110488286 chtop other downstream 596434 31334757 ~ 31340531 (+)

Expression


Co-expression Network