tmem79a (LOC106569868)


Basic Information

Item Value
gene id tmem79a
gene name LOC106569868
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 30817937 ~ 30822555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560411.2
GCAACTACACAAATGTCCCGCAGTGCTTTACCTTGACACACCTGTGAAACAACCCACCCCTACTTAAGTTTCACTTTACGACCGAGTTTGACAAACACTAGGACAAGTTAACTTATTTACACAATTAAAACATCATAATTGAATGTCATGGAACAGCAGGAGCCTAGACATCAGGTGAATCAGTGGGACTTGCCCTTATGAGAATGTTTTGTACCAACTTGTTTTATGGAATATCATTTGAAATGTTGAAACACAATGGTAAATAGTCActtttcagacagacagacgggccaATAATTGCACTCACAACACATAGCCCCTAGACATGAATATCATACAGACCgagacaggcagagaaacagTGATGTCAGAGCACCTGACTTTAAACCCAGAGCCAGATGAAGACCGAGCTGGAGGGCCTTCTACAACCAGTGGGTCTACTGCTGCAGGACCTCAAACACCTGGATCGAAACAACTGGGCCTAGAGCACAGGAGGATGGAAGAAGAAAAGGGGGAGGAGGataagaaggagaaggaggaggcaaCCAGCTCAGCTGCCTTTCAGCCTAGCACTTTGCCATGGCCGGGAGACCAAGAGATGgtgcgagagggagagaaaggaagtgTACCGTCCGAGAGCGAGGGaactgaaggggaggagagggagatagggagccAATAGCTTCTggagggacaggagagacagccagagagtgAGCGAAAGGCAAAATGGAAAAAGAGAAAGCATgccggagggagagagatggacagatgaggAGGTGGATGGAGGCCAAGATGAGGAAAGGGATGGTTCGCTTAATAAAGATGAAGAGGAAAGCCCAGTGAATTGGATGCCAGAAAAGGCTATGCAGGTCTTCACTCCGACAGTGATAGTGCGTCCATCTAGAAACTGGGAGGAGTTCCTACCCGAAAATAACTACTATGAGGAAATGGACACTGAGAAGAGTTCTTTCTTAGAGCCCCTGACACATACAGTCCCACCAGTATACTACTACCCACAATGGACAGAGGAGCGGGACAACTACACACATATGTGTTGCGGGGACGTTCTGAAACTTGGCCTGGGCATTGGTGCTGCAGCTGTTCTATTCCCTCTACTCGTGTGGGGTGGCTATGCCCTCTTGCCCTTTGATGCCCCGCCAATGGACAGCGCCCCTCTCAGGCTGGTGTACACACTACGCTGCTCCTTCTTTGCTGTCATACCCATCATTCTAGgtgTGCTGGTGCAGGGGGTGGCGCGGCTGCACTACGGCGCCGTAACGCCCCTCTACGAGGGCAAGGTAGGGGAGGAGAGCCGGGAGATGGCGGTGCACCGGCACTATGTGGTTGACTCGCTCTCCATCTTCCTGCTCTACTTCCTGCAACTGGCCATTATGGCCACCTACATCAGCCAGGACCTGCTCAAGATTGTGCCCCTGCTCACCATCGTCTTTGCCTTCGGCAGGCTGATctactgggtgtgtgtgtccctagGCAGCAGTGTGAGGGGGTTGGGCTTCGGCCTCTCCTTCCTGCCCATACTGGTCATGCTGGGTGCCAACCTCTACTTTGTGTGCTCGTCACTCAGTGAAGGGGCTGTCTTTGATGTGGCCCCGCCCACTGCCACCCCGGCAGAGTTGGTGGGGctaaggaggaagaggagtagaTATCCTGAAGCCTAGATGGACCCCCAGTCCCTAGacacttgtgtagatctgaaagaTATAAGGATAAATGACATGGGAATATGTCCAATTTGCTTTCTGATAGGGCCGTGCTCAGTAGGCAAACGTTGTGCAAccttgcagatagaaatgtattcctTACTCTATATGTCAGAGATGCAAGTGTGTTCACAATATAACACACATTCCCCAATGTTTTGCCCTACTGAGGTTTGTTTGAAATGTTGTTGGTACCCATTCAGCTCTACACAACTGTCATGGTGTTGATTTGGAAGGAGTAAGGGGGGGAAGAATCAATCAAGTTCATCAGCTTGGATTTCATCTGAAACATTGGATTGCATTTGCAGTGGTCGATGGTGAAATACAATGACTTGAGGCTAGCAACCCCATAGAAGTTGCTTGTAATTGCAGGATTGTGTGCCatacgccctatgggactcccaatcacggggtCTTCAAGTTACTGACATTTGTGAAGACTTGAGTGCAACTTTGCTGAAGTATAAATGTAGTGCGGAGTTGACTTTTAAGAAATAAAAAAATGCAGTGTCAAACAGGCTGGAAGCCCGTAACAACGAGGGAGACAAGGAATAACAAAATACAATAGTGTGAGTGGTTGCATGCATAGAtatgataatgaggggtgttgaatggtgccaaagcaaacaaacaaaatggccacaaaaatgccacaaccaaaatcaAGTGTGTCTGCACGGAGAGAGtctcaatgaatggggaagatgtgtatttatcctgggcccaggtgtgtcccattttgCTGACGACCCTCCCGGTGTCTCCCACcgacatcctaataaggaaaacgAGAAAGAATACAGCAGACTGGGAGGGTTGTCACAGCAGCTATAATTGTTTCAACTGTGCAATGTTTACATTTCATTTCCAAATTTGTTACAGCATTTAATACTCCCAATGGCTGGGAATGAAGTGTAATTTAATACCTACACGCAATATGTGCCTTATGTCTGTACAGTACCATAAAAGCACTGAACAAATCAGTACATTGTTTGTAAAATGGCAGCCAGCTGATATAATTGTTGTATTCCTTTTGGACATTGTCGTTCAATATGGTTGGCACTGTCTTAATGGAATGAT
>TU2650483
CAAACACTAGGACAAGTTAACTTATTTACACAATTAAAACATCATAATTGAATGTCATGGAACAGCAGGAGCCTAGACATCAGGTGAATCAGTGGGACTTGCCCTTATGAGAATGTTTTGTACCAACTTGTTTTATGGAATATCATTTGAAATGTTGAAACACAATGGTAAATAGTCActtttcagacagacagacgggccaATAATTGCACTCACAACACATAGCCCCTAGACATGAATATCATACAGACCgagacaggcagagaaacagTGATGTCAGAGCACCTGACTTTAAACCCAGAGCCAGATGAAGACCGAGCTGGAGGGCCTTCTACAACCAGTGGGTCTACTGCTGCAGGACCTCAAACACCTGGATCGAAACAACTGGGCCTAGAGCACAGGAGGATGGAAGAAGAAAAGGGGGAGGAGGataagaaggagaaggaggaggcaaCCAGCTCAGCTGCCTTTCAGCCTAGCACTTTGCCATGGCCGGGAGACCAAGAGATGgtgcgagagggagagaaaggaagtgTACCGTCCGAGAGCGAGGGaactgaaggggaggagagggagatagggagccA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106588307 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560411.2 False 2804 mRNA 0.48 5 30817937 30822555
TU2650483 True 587 TUCP 0.48 2 30818028 30819016

Neighbor

gene id symbol gene type direction distance location
LOC110489445 NA coding upstream 79552 30735898 ~ 30738385 (+)
LOC110488253 LOC106569864 coding upstream 272943 30509313 ~ 30544994 (+)
LOC110488252 LOC106569863 coding upstream 593295 30191475 ~ 30224642 (+)
LOC110488251 LOC106570151 coding upstream 634023 30178624 ~ 30183914 (+)
LOC110489425 LOC106569855 coding upstream 692627 29817983 ~ 30125310 (+)
LOC118946481 NA coding downstream 66255 30888810 ~ 30898886 (+)
LOC110488270 LOC106569874 coding downstream 274996 31097551 ~ 31103860 (+)
LOC110488269 LOC100196669 coding downstream 298359 31120914 ~ 31127679 (+)
LOC110488267 NA coding downstream 320985 31143540 ~ 31146770 (+)
LOC110488268 thap7 coding downstream 323529 31146084 ~ 31155830 (+)
G2317454 msto1 non-coding upstream 644 30816162 ~ 30817293 (+)
G2317394 NA non-coding upstream 23109 30789673 ~ 30794828 (+)
G2317441 NA non-coding upstream 30340 30787342 ~ 30787597 (+)
G2317436 NA non-coding upstream 37207 30780496 ~ 30780730 (+)
G2317420 NA non-coding upstream 62371 30755275 ~ 30755566 (+)
G2317471 NA non-coding downstream 32303 30854858 ~ 30855088 (+)
G2317478 NA non-coding downstream 38014 30860569 ~ 30860772 (+)
G2317509 NA non-coding downstream 113834 30936389 ~ 30948496 (+)
G2317533 NA non-coding downstream 147506 30970061 ~ 30970379 (+)
G2316421 NA other upstream 886986 29922384 ~ 29931480 (+)
G2314987 NA other upstream 2114513 28698740 ~ 28703424 (+)
G2314887 NA other upstream 2254342 28520255 ~ 28563595 (+)
kcng2 LOC106570224 other upstream 2770603 28016566 ~ 28047334 (+)
G2313197 NA other upstream 3324202 27493099 ~ 27493735 (+)
G2317455 NA other downstream 11175 30833730 ~ 30835101 (+)
G2317562 LOC100196669 other downstream 275064 31097619 ~ 31127687 (+)
G2317685 LOC106569887 other downstream 399562 31222117 ~ 31223562 (+)
LOC110488286 chtop other downstream 512264 31334757 ~ 31340531 (+)
LOC118946484 jtb other downstream 794619 31617119 ~ 31621139 (+)

Expression


Co-expression Network