LOC110488270 (LOC106569874)


Basic Information

Item Value
gene id LOC110488270
gene name LOC106569874
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31097551 ~ 31103860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970975.1
TGCATTTTTTTCTTTTCTTGAGTGGGATCATTTAGGAATCTTGCCAATATGTGACAGAAGCAATTGAACGCTGAGCGAGAAAAGTAGCAATTGCTGAACATCGCAGAGAGAAAACTTTACTTTGAAAAAGGACAGCACAAAACGATCCAAATGGCTGAACAGCACTCCGACCTGGAAAAGGCCATCAACACTTTGGTCACAAAGTTCCATGCCGCTGCGGCCAATAAAGGTCCCACGCTCCAAACCAAAGAGTTCAAAGACCTCCTCGCCTCCCAGTTGCCCAACTTAGTCAAGactGGAGGCTCAGAGCAAGGCCTGGGCAAGATGATGAAACAGATGGGTGTGTCGGACGGTGAGGGAATCACCTTCAAGCACTTCTGGGGCTTGATCCAGTCACTGGCCACCACGCAGCATGACCTCATTAGTAAGAAAGTGTCCAAGAGCAGCTGTGTGCTCCTGTAAGGTCCATGCCTTCTGACGGTGGTGTGAGCCAGGGGGATCCAGACAGCCTCATAGTATCCCACCCAGTGTCAGTACCCCTTCTCACCGTACTGCTCCCATCCAACCCTGGACATTCACATAGTACTCACCCCTCCCACTACAGGCATTTTATTCCCCATACTAGGTAGTGCCAGCAGTGCTCATCTCCTTGATTTAACATCATCACATTTGTTTTTGGGGTTGacatgacgtggaaacaatgttgattttgCCCATTGGGGTGGAACTCTGGGCTATTCCTGTGGTACCTGACCTGTGGTATCCAGACATTGTGTGGTATTTTGGAACATTTTACTGCATACATGTGTTATTGCTGGGGTACAAATCCTGTGGTTTTGTATGgtaattttgttttgtttttatgtggtaattcaatgttttttgtttgtggtTATTTGGTGTAACCACATGGTATGGTAATTGTTGTTGTAATGGTAAATTGTGTGGTAGCTGTATACCACAGGAATTCAGGTTTATGTGGTAATCGGGATCCTAGCTGTACCACAAGGTTTTTTATGGGATCTATATGGTCCTGTGGAACTTTTTGGTTAACAACTGGTCCTGTGGTAACTGAAACCTATTGACATACTATTAGTAAAAACACAATAAAAAGAAACATGACAGAAAGGAATGAATTACAATAACAATAAAGTACTTAACTCCTAAAATCA

Function

NR:

description
protein S100-A13-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970975.1 True 1172 mRNA 0.44 3 31097551 31103860

Neighbor

gene id symbol gene type direction distance location
LOC118946481 NA coding upstream 199579 30888810 ~ 30898886 (+)
tmem79a LOC106569868 coding upstream 274996 30817937 ~ 30822555 (+)
LOC110489445 NA coding upstream 359166 30735898 ~ 30738385 (+)
LOC110488253 LOC106569864 coding upstream 552557 30509313 ~ 30544994 (+)
LOC110488252 LOC106569863 coding upstream 872909 30191475 ~ 30224642 (+)
LOC110488269 LOC100196669 coding downstream 17054 31120914 ~ 31127679 (+)
LOC110488267 NA coding downstream 39680 31143540 ~ 31146770 (+)
LOC110488268 thap7 coding downstream 42224 31146084 ~ 31155830 (+)
LOC110488271 LOC106569876 coding downstream 53365 31157225 ~ 31173468 (+)
LOC110488272 LOC106569877 coding downstream 70378 31174238 ~ 31176355 (+)
G2317614 NA non-coding upstream 2465 31094845 ~ 31095086 (+)
G2317610 NA non-coding upstream 5879 31091436 ~ 31091672 (+)
G2317595 NA non-coding upstream 18987 31078169 ~ 31078564 (+)
G2317594 NA non-coding upstream 20365 31066321 ~ 31077186 (+)
G2317557 LOC106569871 non-coding upstream 96487 30997945 ~ 31001064 (+)
G2317638 NA non-coding downstream 45203 31149063 ~ 31149263 (+)
G2317639 NA non-coding downstream 45745 31149605 ~ 31149856 (+)
G2317640 NA non-coding downstream 47890 31151750 ~ 31151964 (+)
G2317642 NA non-coding downstream 52305 31156165 ~ 31156364 (+)
G2317670 NA non-coding downstream 105842 31209702 ~ 31209911 (+)
G2317455 NA other upstream 262450 30833730 ~ 30835101 (+)
G2316421 NA other upstream 1166600 29922384 ~ 29931480 (+)
G2314987 NA other upstream 2394127 28698740 ~ 28703424 (+)
G2314887 NA other upstream 2533956 28520255 ~ 28563595 (+)
G2317685 LOC106569887 other downstream 118257 31222117 ~ 31223562 (+)
LOC110488286 chtop other downstream 230959 31334757 ~ 31340531 (+)
LOC118946484 jtb other downstream 513314 31617119 ~ 31621139 (+)
LOC110488305 LOC106569913 other downstream 831023 31934883 ~ 31988737 (+)
G2318792 NA other downstream 849762 31953622 ~ 31954513 (+)

Expression


Co-expression Network