LOC110488282 (LOC106569895)


Basic Information

Item Value
gene id LOC110488282
gene name LOC106569895
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31579007 ~ 31592755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560447.2
TCATTTTTTCCTCGAAGTTTATTGGTTAAAATACTGGGAGTAATCAGCCCCCCGATGTCGAGCGTTTTACTCTCCGGCAGCCCAGAAGGTTCCAGACGGTTGTCCCACACGCTGTCAAAAATGATGGGCCAACAGGTTCTCGTGCTGAGCCAGAATATGAAGAGGGAGTCTGGACGGAAGGTTCAGACAGGAAATATCAGTGCAGCCAAGACGATCGCAGACGTCATCAGAACATGCCTGGGACCAAGGGCCATGATGAAGATGCTGTTGGACCCCATGGGTGGGATCGTGATGACCAACGATGGTAACGCTATCCtgagagagATCCAGGTCCAGCACCCGGCTGCCAAGTCCATGATTGAGATAAGTCGCACTCAGGACGAGGAGGTGGGAGACGGCACCACCTCTGTCATCATCCTGGCGGGTGAGATGCTGTCCGTGTCAGAGCAGTTCCTGGAGCAGCAAATGCACCCAACAGTTGTCATCAGCGCCTACAGACAAGCTCTGGATGATATGCTCAACCTTCTCAAAGAAATCAGcaCCCCAGTGGACGTTAGCGACAGGAAGATGATGCTGAAGATCATCCACTCTGCCATCAACACCAAGGCCCTGAGCCGCTGGTCTGACATGGCCTGCAGCATCTCACTGGACGCCGTCAAAactgtggagatggaggagaacgGACGCAAGGAGATTGACATCAAGAAGTACGCCAAAGTAGAAAAGGTTCCCGGTGGGATCATCGAGGACTCGTGCGTGCTGAGAGGTGTGATGGTTAACAAGGACGTGACTCACCCGCGCATGCGCAGAATGATCAAGGATCCCCGCATTATCCTGTTGGACTGCTCCCTGGAGTACAAGAAGGGAGAAAGCCAGACTGATATTGAGATCACTCGTGAGGAGGACTTTGCCCGCATCCTGCAGATGGAGGAGGAGTACATCCAGCAGACCTGTGAAGACATCATCCGCCTCAAGCCTGACCTCATCTTCACAGAGAAGGGCATCTCAGACTTGGCTCAGCACTACCTGATGAAGGCTAACATCACGGCTATTCGCCGTGTCAgaaagacagacaacaacaggaTCGCCAGAGCGTGTGGCGCACGTATTGCCAGCCGTACGGATGAGCTGCGCGAGGAGGACGTGGGCCTGGGGGCGGGCCTGTTTGAGATCAAGAAGATTGGCGACGAGTACTTCACTTTCGTCACAGAGTGCAAAGACCCCAAAGCCTGCACCATCCTGCTGAGAGGAGCCAGCAAGGAAATCCTGGCGGAGGTGGAGCGTAATCTGCAGGATGCCATGCAGGTGACCCGCAACGTTCTGCTGGAGCCCAGCCTGCTTCCTGGCGGCGGCGCCACCGAGATGGCAGTGTCCCAGTGGCTGATGGAGCGATCCAAGGCCATCACTGGCGTGGAGCAATGGCCCTATCGCGCCCTTGCCCAGGCCCTGGAAGTCATCCCCCGCACCCTCATCCAGAACTGTGGCGCCTCCACCATCCGTGTGCTCACCGCCCTCAGGGCCAAGCACACCCAGGAGGACAGTGTATCGTGGGGGGTGAACGGAGAGACTGGCACCCTGGCTGACATGACCGTCCTGGGCATCTGGGAACCGCTGGCCGTCAAGGCTCAGACCTACAAGACCGCAGTAGAGACGGCCATCTTGTTGCTGCGCATCGACGACATTGTCTCCGGACACAAGAAGAAGGGAGACGAGcagacaggaggaggacagggtgctgagtagaggagaagaagacaagGATCAGGAAGAGGGTAATGGAGGAATAGGCAATCTGAGCTGTGACAACACTGTTCTATAAACCACTAACTCAGATATGACATTTGGTATGGACACTAAGCAGACTGGGATAGTGTTGTTGCATGCATTACATATGAATGCACTAGATTGGGTATTAAGGCACCCCAGTTGgctttggtcagtgtgtgtacggtgtgtgtttGCGCAGTATTTATGGCAGTAAGTAAGATGACTGAATATGTTCTCCTGGGACCAAGGTTTACCTCAGCTAGTCACTGTAGGTATTTCTCTGTATGGTAAAACTCCTTTGTGTGACTTTAGTTGAAGAACAGTTGCCAATGGATGGTGACCAAATCAAGTGACCTATAAGTCATTTGAATGAACTACTAAAAAAAATAGACATTGTAAAATGATTTAGAGCCTGCAATGTCCACTTCTGAAGAtcctttttaaatgtttaaagtATGTATTATATAGATTGGATCGTAACACATTACTGCATTTCAATGAATGAGAATGCTTTCTCTCTCCAAAATAATTGTTGGGGTTATTAAATTGGACTGGTGACTATGGTTCTGAATCCTGTTACTCCACCAGAACTGTTTTCCTCCATTACCCCTTTGCCTGGTGCTGTTGCCTGTGATTGTATCAACCTCAATAAAATTGGAAACAGATGA

Function

NR:

description
T-complex protein 1 subunit gamma-like

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09495 CCT3, TRIC5; T-complex protein 1 subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560447.2 True 2435 mRNA 0.51 14 31579007 31592755

Neighbor

gene id symbol gene type direction distance location
LOC110488283 LOC106569891 coding upstream 245 31556480 ~ 31578762 (+)
LOC110488276 LOC106569890 coding upstream 36604 31522250 ~ 31542403 (+)
LOC110488278 LOC106569880 coding upstream 61223 31497450 ~ 31517784 (+)
LOC110488277 LOC106569878 coding upstream 93273 31370711 ~ 31485734 (+)
LOC110488285 LOC106569884 coding upstream 226112 31345247 ~ 31352895 (+)
glmp glmp coding downstream 203 31592958 ~ 31598248 (+)
LOC118946484 jtb coding downstream 24364 31617119 ~ 31621139 (+)
LOC110488287 LOC106569900 coding downstream 107895 31700650 ~ 31711516 (+)
LOC110488296 LOC106569903 coding downstream 222072 31814827 ~ 31826946 (+)
LOC110488297 LOC106569902 coding downstream 235433 31828188 ~ 31855884 (+)
G2317877 NA non-coding upstream 30094 31548698 ~ 31548913 (+)
G2317874 NA non-coding upstream 32608 31546186 ~ 31546399 (+)
G2317870 NA non-coding upstream 35951 31542830 ~ 31543056 (+)
G2317869 NA non-coding upstream 47044 31531745 ~ 31531963 (+)
G2317868 NA non-coding upstream 49068 31529641 ~ 31529939 (+)
G2318573 NA non-coding downstream 35020 31627775 ~ 31628006 (+)
G2318583 NA non-coding downstream 42149 31634904 ~ 31635122 (+)
G2318586 NA non-coding downstream 43971 31636726 ~ 31636981 (+)
G2318597 LOC100136012 non-coding downstream 49143 31641898 ~ 31642169 (+)
G2318607 NA non-coding downstream 57098 31649853 ~ 31650084 (+)
LOC110488286 chtop other upstream 238476 31334757 ~ 31340531 (+)
G2317685 LOC106569887 other upstream 355445 31222117 ~ 31223562 (+)
G2317562 LOC100196669 other upstream 451320 31097619 ~ 31127687 (+)
G2317455 NA other upstream 743906 30833730 ~ 30835101 (+)
tmem79a LOC106569868 other upstream 759991 30817937 ~ 30822555 (+)
LOC110488305 LOC106569913 other downstream 342128 31934883 ~ 31988737 (+)
G2318792 NA other downstream 360867 31953622 ~ 31954513 (+)
G2319921 NA other downstream 1349448 32942203 ~ 32943392 (+)
LOC110487593 LOC106570137 other downstream 1576708 33166851 ~ 33175323 (+)

Expression


Co-expression Network