glmp (glmp)


Basic Information

Item Value
gene id glmp
gene name glmp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31592958 ~ 31598248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560449.2
AGCTGATCAAATAAGGAACTAGGCACGTGATTCCTCCCCGAAAAAGAAAGATGGCGGCGGATATTATGTACACAATCCACTTTTATGTCTTATTTGTGCTTTCAACGCTTCGATGTTCTTCTAGTTTTATCGGCAATGGTGAGAACTACCGACGGAATTTATCCCTGGAGCTTAACCCTGGTCTAAACTCCTTGCTGACGCCGCTACCCCCTGGTGTTGGCTTGCTCCATGTGCGGGCGCTGGGCAAGAACAACACACTGCACTACCTCCTCTGCAGCCAGGGGGCGCCAGCATTACTTCTGGTGCACACAAACTCCACTTCATCCAAGGTGAAGGTAGACTGGCCTGCCTTCTTGGTACAAAATACCACAGGCAGCCTGAAATTGACTCCGGAGAGCAGTGTTCTGTACAGCAACGCACTCGTCTTTACCAGGCTGTGGGAGTACGACGATGTCAACGACACAGCCGTCCCCGAGCACCTACCCCCCTCCAGCTTCTTCCAGCCCTATGAGCTGCAGAACTTCACCTGGGATGACCTGAACAAGACACTTGACCCCATGGCCCACACAGCCCTGCTCTGTGGAAGAGGCGCCAGCGAGAGCTTCAGCAACGGTTCGCTCTGTCTGAAGTTCTCAGCCTTTGATGTTGAGGGGCGGGACCAAGGCTGGCCCAGCCTCCTCCACAACGCAAACTCCTCCCAGCTGAGGGTGGTGCTGGACGGTGTGGTCCCGAGGTCCAATCGCTCCCGCTTCTCTCTAGAGCTACAGGTTGTGGGCGGCACCCAGGCCATGAGCAGAGTGGACGTGCTCCAGTCAATAGATGATGAATACACACCCTCCATATTCAAGGTATCTCAGTGGGTGTCCTCTCCAGTCAACTCCACCTCTCCTGTTCTTGGCTACGCCCAATGGAAGCCCGTGGCCTACCGCAGGCCATCGCCTCTCTTTGAGGACGCCACTCCCTGCCGCCACTCAACCCCTGTCCCCGTAGCCCAGCTTCCCCCCTCCGGCCTAGTGCGGGCATATTTTGGAGGGGAGCGCCAGACCACCGGGCTCAACATGACCTTCAGTATCACTGGAGACCCATTCTACAACACCACCAACTACCTCAGCTGGACTGTGTTGGTGGGGCTGGGCTCTCCTCCTGTGGACTCGTTCTCTCCCCTGGTTCTGGTCATCATGGCGGTGGGGCTGGGCACTCCCATGCTGATCATCCTGCTTGgcggggtatgtgtgtgtgtccgcaaGAACAGGCCCCAACCACAGGTCTATGAGCCAATCAACTGAGGCCAAGCCAGGATATGTGTACTTTTAAGTCCTGCTTTAACCAGTTTCTTGCCAATGAGCAGACACCTCTGGGCccatttttttccaaaagttaTCTGGATTTAGCCTATcggataggattaaatgcataATTTACTTGAATGGGGACAACTGTTCTATTACTTatatttctatgcatttaatctTATCTGATAGGCGAAAAACTGGGCCCTGGTGTCCGGCAGGTGTCactcatttataaaaaataaaaatgaggtACATGACTGTCTAATATGGCCACACATTGTTGGCACAACGGGCCAATAAGGCTTTGACAGAAACACATTTTTAACCACTTGCATAATTTAGTAATGGGCTGAATCATCTTGTGGAAGAGAAAGCCCATGAATGAGTTGATTTAGTTGTGCTTGGAAATGCCAAAGGCTCCCATCTCAAACCTAACATTCCATGTGAGAACATATTTATCCAGAAAATTGTGAAAAGGCTAGTTACTTTAGTTAAGGATGTTTTTTCATTGTAAAACTCAAACGGCGTACACTGTCCCTCCAGTTCTGTGTAAAACAGTATATTATCTTATTGTTGCTCAACAAATATTAGTACATGTTACACTGAAGTGGTCCATGTTTGGCACTGCCTATCTAGATATACTGACCTGACATGGGTCCTAACTAATAATGGACTCAAGCATATATCTGATGACAGAAGAAGAGCTACAAAGGAGAAGGGGCTTTTTTTCTTCTCTTCGTAAcactgatctgaggtcagttTGTACTGTAATGGTTTAGGAATTGGTCAAACTAAAATAATCCAAGATCTGCACCTGAAGGAGACTCATACCTGGAGCAGTGAAAGGAAAATAAATCTCAAGAGAAGAAGCTTAAAGGAACAAGATTTGTTGCATTCTTTCCCAACCCCTTGGATGTTAGTTATTGGTTGGGGTAAGGGGAAGCCTAGTTAGGGTCCATGTGCTACACCCAAAGTGAACTGAAATGTGATGTTTGATTTAATGTCAATGAAGTTAGAAATCGGTATGGGATTACAAAATATTTGATATTGTAATTAATGTTACTACTTTTAAGGCCGTGTTGATTATAGTTCTCCTTTGGAATTAATTTAAAACAAGCTTCAAAGTCATATTCAGTTTGTAATCACAGTACAAGAGAATAAATGGCCTTGATTATTTACCTGTATTTGTCTATTAGGCAACAATGTGTTATCTTAATTTTTGGACTAAATGCTAAATTTAATGCAAAAACACCAGTACCTGAAATATTATTATGCAAGCATCTAATACACAGGtcacatttatttgtattttgagGAAATGCTCCCTTTCAATAGTAATGTAATGGTCTGTCCATAATTGTCTTTTTCTTAAAGAAATATACTGGCAA
>XM_021560450.2
CCTCCCCGAAAAAGAAAGATGGCGGCGGATATTATGTACACAATCCACTTTTATGTCTTATTTGTGCTTTCAACGCTTCGATGTTCTTCTAGTTTTATCGGCAATGTTATCCCTGGAGCTTAACCCTGGTCTAAACTCCTTGCTGACGCCGCTACCCCCTGGTGTTGGCTTGCTCCATGTGCGGGCGCTGGGCAAGAACAACACACTGCACTACCTCCTCTGCAGCCAGGGGGCGCCAGCATTACTTCTGGTGCACACAAACTCCACTTCATCCAAGGTGAAGGTAGACTGGCCTGCCTTCTTGGTACAAAATACCACAGGCAGCCTGAAATTGACTCCGGAGAGCAGTGTTCTGTACAGCAACGCACTCGTCTTTACCAGGCTGTGGGAGTACGACGATGTCAACGACACAGCCGTCCCCGAGCACCTACCCCCCTCCAGCTTCTTCCAGCCCTATGAGCTGCAGAACTTCACCTGGGATGACCTGAACAAGACACTTGACCCCATGGCCCACACAGCCCTGCTCTGTGGAAGAGGCGCCAGCGAGAGCTTCAGCAACGGTTCGCTCTGTCTGAAGTTCTCAGCCTTTGATGTTGAGGGGCGGGACCAAGGCTGGCCCAGCCTCCTCCACAACGCAAACTCCTCCCAGCTGAGGGTGGTGCTGGACGGTGTGGTCCCGAGGTCCAATCGCTCCCGCTTCTCTCTAGAGCTACAGGTTGTGGGCGGCACCCAGGCCATGAGCAGAGTGGACGTGCTCCAGTCAATAGATGATGAATACACACCCTCCATATTCAAGGTATCTCAGTGGGTGTCCTCTCCAGTCAACTCCACCTCTCCTGTTCTTGGCTACGCCCAATGGAAGCCCGTGGCCTACCGCAGGCCATCGCCTCTCTTTGAGGACGCCACTCCCTGCCGCCACTCAACCCCTGTCCCCGTAGCCCAGCTTCCCCCCTCCGGCCTAGTGCGGGCATATTTTGGAGGGGAGCGCCAGACCACCGGGCTCAACATGACCTTCAGTATCACTGGAGACCCATTCTACAACACCACCAACTACCTCAGCTGGACTGTGTTGGTGGGGCTGGGCTCTCCTCCTGTGGACTCGTTCTCTCCCCTGGTTCTGGTCATCATGGCGGTGGGGCTGGGCACTCCCATGCTGATCATCCTGCTTGgcggggtatgtgtgtgtgtccgcaaGAACAGGCCCCAACCACAGGTCTATGAGCCAATCAACTGAGGCCAAGCCAGGATATGTGTACTTTTAAGTCCTGCTTTAACCAGTTTCTTGCCAATGAGCAGACACCTCTGGGCccatttttttccaaaagttaTCTGGATTTAGCCTATcggataggattaaatgcataATTTACTTGAATGGGGACAACTGTTCTATTACTTatatttctatgcatttaatctTATCTGATAGGCGAAAAACTGGGCCCTGGTGTCCGGCAGGTGTCactcatttataaaaaataaaaatgaggtACATGACTGTCTAATATGGCCACACATTGTTGGCACAACGGGCCAATAAGGCTTTGACAGAAACACATTTTTAACCACTTGCATAATTTAGTAATGGGCTGAATCATCTTGTGGAAGAGAAAGCCCATGAATGAGTTGATTTAGTTGTGCTTGGAAATGCCAAAGGCTCCCATCTCAAACCTAACATTCCATGTGAGAACATATTTATCCAGAAAATTGTGAAAAGGCTAGTTACTTTAGTTAAGGATGTTTTTTCATTGTAAAACTCAAACGGCGTACACTGTCCCTCCAGTTCTGTGTAAAACAGTATATTATCTTATTGTTGCTCAACAAATATTAGTACATGTTACACTGAAGTGGTCCATGTTTGGCACTGCCTATCTAGATATACTGACCTGACATGGGTCCTAACTAATAATGGACTCAAGCATATATCTGATGACAGAAGAAGAGCTACAAAGGAGAAGGGGCTTTTTTTCTTCTCTTCGTAAcactgatctgaggtcagttTGTACTGTAATGGTTTAGGAATTGGTCAAACTAAAATAATCCAAGATCTGCACCTGAAGGAGACTCATACCTGGAGCAGTGAAAGGAAAATAAATCTCAAGAGAAGAAGCTTAAAGGAACAAGATTTGTTGCATTCTTTCCCAACCCCTTGGATGTTAGTTATTGGTTGGGGTAAGGGGAAGCCTAGTTAGGGTCCATGTGCTACACCCAAAGTGAACTGAAATGTGATGTTTGATTTAATGTCAATGAAGTTAGAAATCGGTATGGGATTACAAAATATTTGATATTGTAATTAATGTTACTACTTTTAAGGCCGTGTTGATTATAGTTCTCCTTTGGAATTAATTTAAAACAAGCTTCAAAGTCATATTCAGTTTGTAATCACAGTACAAGAGAATAAATGGCCTTGATTATTTACCTGTATTTGTCTATTAGGCAACAATGTGTTATCTTAATTTTTGGACTAAATGCTAAATTTAATGCAAAAACACCAGTACCTGAAATATTATTATGCAAGCATCTAATACACAGGtcacatttatttgtattttgagGAAATGCTCCCTTTCAATAGTAATGTAATGGTCTGTCCATAATTGTCTTTTTCTTAAAGAAATATACTGGCAA

Function

symbol description
glmp Predicted to be involved in protein localization to lysosome and protein stabilization. Predicted to be integral component of membrane. Predicted to be active in lysosome. Orthologous to human GLMP (glycosylated lysosomal membrane protein).

NR:

description
glycosylated lysosomal membrane protein isoform X2

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560449.2 False 2680 mRNA 0.46 6 31592958 31598248
XM_021560450.2 True 2628 mRNA 0.46 6 31592990 31598248

Neighbor

gene id symbol gene type direction distance location
LOC110488282 LOC106569895 coding upstream 203 31579007 ~ 31592755 (+)
LOC110488283 LOC106569891 coding upstream 14196 31556480 ~ 31578762 (+)
LOC110488276 LOC106569890 coding upstream 50555 31522250 ~ 31542403 (+)
LOC110488278 LOC106569880 coding upstream 75174 31497450 ~ 31517784 (+)
LOC110488277 LOC106569878 coding upstream 107224 31370711 ~ 31485734 (+)
LOC118946484 jtb coding downstream 18871 31617119 ~ 31621139 (+)
LOC110488287 LOC106569900 coding downstream 102402 31700650 ~ 31711516 (+)
LOC110488296 LOC106569903 coding downstream 216579 31814827 ~ 31826946 (+)
LOC110488297 LOC106569902 coding downstream 229940 31828188 ~ 31855884 (+)
LOC110488300 LOC106569907 coding downstream 269727 31867975 ~ 31888423 (+)
G2317893 NA non-coding upstream 4797 31584260 ~ 31588161 (+)
G2317877 NA non-coding upstream 44045 31548698 ~ 31548913 (+)
G2317874 NA non-coding upstream 46559 31546186 ~ 31546399 (+)
G2317870 NA non-coding upstream 49902 31542830 ~ 31543056 (+)
G2317869 NA non-coding upstream 60995 31531745 ~ 31531963 (+)
G2318573 NA non-coding downstream 29527 31627775 ~ 31628006 (+)
G2318583 NA non-coding downstream 36656 31634904 ~ 31635122 (+)
G2318586 NA non-coding downstream 38478 31636726 ~ 31636981 (+)
G2318597 LOC100136012 non-coding downstream 43650 31641898 ~ 31642169 (+)
G2318607 NA non-coding downstream 51605 31649853 ~ 31650084 (+)
LOC110488286 chtop other upstream 252427 31334757 ~ 31340531 (+)
G2317685 LOC106569887 other upstream 369396 31222117 ~ 31223562 (+)
G2317562 LOC100196669 other upstream 465271 31097619 ~ 31127687 (+)
G2317455 NA other upstream 757857 30833730 ~ 30835101 (+)
tmem79a LOC106569868 other upstream 773942 30817937 ~ 30822555 (+)
LOC110488305 LOC106569913 other downstream 336635 31934883 ~ 31988737 (+)
G2318792 NA other downstream 355374 31953622 ~ 31954513 (+)
G2319921 NA other downstream 1343955 32942203 ~ 32943392 (+)
LOC110487593 LOC106570137 other downstream 1571215 33166851 ~ 33175323 (+)

Expression


Co-expression Network