LOC110488295 (LOC106570158)


Basic Information

Item Value
gene id LOC110488295
gene name LOC106570158
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31775245 ~ 31782399 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560465.2
AAGAAGGAGAACCATACTAGTGTGCCATACTTGTGGTGCACCATTGACTGTTTAAGGAAGTAGTTCTGGTTTAATCTGGCTATAAGACTAAACCTCCTATGTAAGATACTTAGACCTATTCATAGCCACTCGATCTGTATCACTGCTTGTGCTGTAACAACATTCAAAGCAACACAGTTCAAGAAGAATAGCCAGACTCGCTAAGCTCGGGATTTACTAGGCTAAGTTGTCTGGTCTGGGGTAGTCAAACTGTTCTGGCAACAAGAGTTGATAAGATGTGGAAAGAGTTGAAGAAAAACCAGCTAGTCAAGTACGGCGCTGTGACCACAGTGACAACCATCATGCCGTTTGTCTCCAAACCAGGCTATGTTTTACTGCGAAAGTGGATCGCCGGTGGGATATGCCGCAGCCGTGCCAAACTGCATGGAAGGACTGTGGTGATCACTGGTGCCAACACTGGCATCGGCAAGGAGACGGCCTGGGATATGGCCATGAGAGGAGCTCGGGTGATCATGGCTTGCCGAGATCTTACCAGGGGAGAAGCAGCTGCAGCAGAGATCCGCAGTTCCACAGGAAATACTAACGTGGTGGTGCAACAACTAGACCTGGCCTCCCTCGGTTCAGTACGTCAGTTTGCTCGGGAATTCATTGCCACAGAGACCCGTCTGGACATACTTATCAACAACGCAGGTATAATGCTGTGTCCCAAAAGCCTCACAGTGGAAGGTTTTGAGAGTCAATTTGCCGTCAATCACCTAGGTCACTTCCTATTGACCAATCTGCTCCTGGACCTGCTGAAAGCCTCCACCCCCAGCCGGGTCATCAATGTGTCTAGCATCGCTCATCAAGGCGGGAAAATCCACTTTGAAGACCTTAATTTTGATAAGAAAGGTTACAACTCAGTAATCGCCTATAAGCAGAGTAAACTGGCCAACCTCCTCTTCTCTAGGGAGCTGGCACGAAGGACCAAAGGTACTGGAGTGACGTCGTATTCCCTGCACCCCGGAGTTATCCGGACAGAGCTGTGGCGCCACTCGCAGTCAAAGTACCCCACGTTGAGTGCAATGCTGTCAGCCCCCGCCTGGCTCCTAATGAAGACCCCCAGGGAGGGTGCCCAGACCACCATCTACTGCGCCGTCAATGAAGGGCTGGAGGAGAAGAGTGGCTGCTACTTCAGTGACTGTCAGGTAAAGGAGCCAGCTCCTGAGGGAAGAGATGATCTTGCAGCACTGAGACTATGGGGTGTTAGCGCCGGGCTAGTAGGACTCATTAAGAACAACTGAACAACTCGCCTTGCAACAATACTGACATATTTTTCCATGTTGGCTCTTAACTTTCATATCAGAAGGGTAATTGTAAGATATCCTGTATTCTATGTATATATATTGTGGGAAAATACACATTTTCTATATTATACATTGTGGGAAAATACACATTTTCTGTACTATaacctcagcaaaaaaagaaacatcctatcactgtcaactgcgtttattttcagcaaacttaacatgtgtaaatatttgtatgaacataacaagattcaacaactgagacataaactgaacaag
>XM_021560466.2
AAGAAGGAGAACCATACTAGTGTGCCATACTTGTGGTGCACCATTGACTGTTTAAGGAAGTAGTTCTGGTTTAATCTGGCTATAAGACTAAACCTCCTATGTAAGATACTTAGACCTATTCATAGCCACTCGATCTGTATCACTGCTTGTGCTGTAACAACATTCAAAGCAACACAGTTCAAGAAGAATAGCCAGACTCGCTAAGCTCGGGATTTACTAGGCTAAGTTGTCTGGTCTGGGGTAGTCAAACTGTTCTGGCAACAAGAGTTGATAAGATGTGGAAAGAGTTGAAGAAAAACCAGCTAGTCAAGTACGGCGCTGTGACCACAGTGACAACCATCAGCTATGTTTTACTGCGAAAGTGGATCGCCGGTGGGATATGCCGCAGCCGTGCCAAACTGCATGGAAGGACTGTGGTGATCACTGGTGCCAACACTGGCATCGGCAAGGAGACGGCCTGGGATATGGCCATGAGAGGAGCTCGGGTGATCATGGCTTGCCGAGATCTTACCAGGGGAGAAGCAGCTGCAGCAGAGATCCGCAGTTCCACAGGAAATACTAACGTGGTGGTGCAACAACTAGACCTGGCCTCCCTCGGTTCAGTACGTCAGTTTGCTCGGGAATTCATTGCCACAGAGACCCGTCTGGACATACTTATCAACAACGCAGGTATAATGCTGTGTCCCAAAAGCCTCACAGTGGAAGGTTTTGAGAGTCAATTTGCCGTCAATCACCTAGGTCACTTCCTATTGACCAATCTGCTCCTGGACCTGCTGAAAGCCTCCACCCCCAGCCGGGTCATCAATGTGTCTAGCATCGCTCATCAAGGCGGGAAAATCCACTTTGAAGACCTTAATTTTGATAAGAAAGGTTACAACTCAGTAATCGCCTATAAGCAGAGTAAACTGGCCAACCTCCTCTTCTCTAGGGAGCTGGCACGAAGGACCAAAGGTACTGGAGTGACGTCGTATTCCCTGCACCCCGGAGTTATCCGGACAGAGCTGTGGCGCCACTCGCAGTCAAAGTACCCCACGTTGAGTGCAATGCTGTCAGCCCCCGCCTGGCTCCTAATGAAGACCCCCAGGGAGGGTGCCCAGACCACCATCTACTGCGCCGTCAATGAAGGGCTGGAGGAGAAGAGTGGCTGCTACTTCAGTGACTGTCAGGTAAAGGAGCCAGCTCCTGAGGGAAGAGATGATCTTGCAGCACTGAGACTATGGGGTGTTAGCGCCGGGCTAGTAGGACTCATTAAGAACAACTGAACAACTCGCCTTGCAACAATACTGACATATTTTTCCATGTTGGCTCTTAACTTTCATATCAGAAGGGTAATTGTAAGATATCCTGTATTCTATGTATATATATTGTGGGAAAATACACATTTTCTATATTATACATTGTGGGAAAATACACATTTTCTGTACTATaacctcagcaaaaaaagaaacatcctatcactgtcaactgcgtttattttcagcaaacttaacatgtgtaaatatttgtatgaacataacaagattcaacaactgagacataaactgaacaag

Function

NR:

description
retinol dehydrogenase 12-like isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560465.2 False 1571 mRNA 0.47 7 31775245 31782399
XM_021560466.2 True 1550 mRNA 0.47 7 31775245 31782399
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110488294 vps45 coding downstream 1714 31752479 ~ 31773531 (-)
plekho1a LOC106569901 coding downstream 26378 31726934 ~ 31748867 (-)
LOC110488290 cart coding downstream 143052 31630876 ~ 31632193 (-)
si:ch211-191i18.4 LOC106569897 coding downstream 151293 31622507 ~ 31623952 (-)
LOC110488279 LOC106569894 coding downstream 164386 31598250 ~ 31610859 (-)
LOC100135967 LOC100135967 coding upstream 26728 31809127 ~ 31813792 (-)
mindy1 LOC106569905 coding upstream 74397 31856796 ~ 31865697 (-)
LOC110488303 LOC106569912 coding upstream 130838 31913237 ~ 31955694 (-)
LOC110488306 LOC106588350 coding upstream 221877 32004276 ~ 32029335 (-)
LOC110488307 tp8l2 coding upstream 257280 32039679 ~ 32047102 (-)
G2318920 NA non-coding downstream 9464 31765465 ~ 31765781 (-)
G2318905 NA non-coding downstream 37789 31737039 ~ 31737456 (-)
G2318904 NA non-coding downstream 38435 31736569 ~ 31736810 (-)
G2318902 NA non-coding downstream 39227 31735614 ~ 31736018 (-)
G2318901 NA non-coding downstream 39915 31735073 ~ 31735330 (-)
G2318941 NA non-coding upstream 16882 31799281 ~ 31799841 (-)
G2318978 NA non-coding upstream 69706 31852105 ~ 31852649 (-)
G2318969 NA non-coding upstream 121653 31904052 ~ 31940371 (-)
G2319046 NA non-coding upstream 215874 31998273 ~ 32009887 (-)
G2319049 NA non-coding upstream 217915 32000314 ~ 32011852 (-)
G2318387 LOC106569884 other downstream 422355 31345055 ~ 31352890 (-)
LOC110488289 LOC106569889 other downstream 440575 31323368 ~ 31334791 (-)
G2318269 NA other downstream 639286 31135507 ~ 31135959 (-)
G2316696 NA other downstream 1735648 30034298 ~ 30039597 (-)
G2319615 NA other upstream 575949 32358348 ~ 32358580 (-)
G2319641 NA other upstream 612469 32394868 ~ 32473798 (-)
LOC110488319 LOC106569927 other upstream 803496 32584624 ~ 32587517 (-)
G2320623 NA other upstream 1135103 32917502 ~ 32949938 (-)

Expression

LOC110488295(LOC106570158) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
End of interactive chart.

LOC110488295(LOC106570158) Expression in each Bioproject

Bar chart with 19 bars.
LOC110488295(LOC106570158) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network