LOC110488297 (LOC106569902)


Basic Information

Item Value
gene id LOC110488297
gene name LOC106569902
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31828188 ~ 31855884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560472.2
ACACAACTCAGTTTGGAAGATTCCAAAGACTCGTGATTTTATTCTAGGTTGAGTCTTGGAGAAAGTTGTGACATAGCAAGTTGATATTCCAATGTTATTTATTTCCAACATTGGTTATTCTGAGCTTTTCTTTTCAAATCACACAATGTAAAGTAGAGACCATAAACCATCATTTGGGTTTATGTATGTATGACTTTGGTACTGAACAGATAGGACCAATGACGCATCAAACGTTGGTTTCATGCCAAGGGATGTGTGTTCGCTCAGATTCTCTGCCCATTGATGTGATAACGCTGGCGTCAACAGTTCTTTTAAATATTTTGAGGCGGATCCGTCAGCTGGAGGAAGGCATTTCTTTCGGAATTTGCGCAGCATTAGAATGAGATTCGAGCTGGGGAGCTAGAGTCGTTCCAAATGGAATTACAAATCAAATGGATTGATTGAGACCCTAAAATCGACATTGTTTGTCAAGAAGATTTGACTGCCGCCATGGCTGACATGGAagtgtctctctcccctgcccaGATCGAGGCACTTTACCTCAGCCCCTCGCTGTCCTCCACCTCCACATTTTCCTGCCCTTCCTCACCTGGATCCTCTTCTTCCTCGTTCTCCTGCTCAGACTGCTCCTCGGACTGCCCCAACCAGCACCAGTCGTCTTCCAGTCCCAGAAGCTCCAGCCCCAGTGGCTGCAGCAGCAGCGACAGCGATGGCATGCGGGGCTGCAGCCCTCCTCTGGACATCATATCTGAGGACGCTGTGGTGCTGGACCTGGTCATCAATCCCGAAGTGGCCTTGAAGGCTTGCCAGGAGGTCCTGCAGAAGGTTAAACTCCTGAAGGTTGAGGAAGAACCGGAGTTGTTGCAAAAGTGCATCCCACAATGGCGGCTGCCCAAAGAGACCGTATACATGGAGCCTTGCAACACGGGTTCCACTAAAGAGGAAGAACAATGTTATTCTCCTCAACAAATAACGCAGAAATGCCCTCCGTCACAACAGCCTTGTGACACAGGTtcaattaaagaggaggaggaggaggaagaagaaaagCGTGACCCTCCCCGACAAATTACGCAGACATGCCCTCAGTCGCAACAACAGAATGGCGACCAGTCCTCTGCGGCGGCCAAGCAGTCCTTGCTTTTGCGGCTCTTTGAATCTAAGCTCTTCGACGTCTCCATGGCCATGTCCTACCTGTACAAGTCCAAAGAGCCCGGTGTCCAGGCCTACATTGGCAACCGCCTCTTTAGCTTCTCGGACGAAGACGTGGACTTCCACCTGCCCCAGCTGCTCAACATGTACGTCCACATGGACGAGGATATGGGCGACGCCATCCGACCCTATGTGGTGCATCGCTGCCGCCAGAGCATTGCCTTCTCCCTGCAGACGGCATGGCTGCTCGGCGCCTACTCCTCCGACATGCACATCTCTACCCAGCGCCACTCTCGCGGCACCAAGCTGCGCAAGCTAATCCTCTCAGATGAACTAAAGCCCCATGCAGCTTCTAAAGGTGTGGGTGCTGCGGATGCCAGGCCTGGCCTGCGGGTCGGTGCCCGCATTCACCACCACCAGCGGCACACCATGAAGCCGTCCCTGGCCCCCGACAGCCAAATCAACCCCACCGATGCCTACCTCTCGCCTTCCAAGCGGACACACCAGCGGTCCAAGTCAGACGCCACGCATTGCACGAGCCTGGGGACTAGCCTCAAGAGAACAGCCAGCAACCCCAAGGTGGAAAGCGGCTACGATGAGcCGCTGCGCCTGACGCCGCAGAGGGAGTTCATCAAGTCTCTTATAAGCATCGGAAAGCAGCTGGCCACACTGCCCACCAAGGAGCAGAAGACCTGGCAGCTCATCTCAGAGCTGTCACAGCTCAACCACAAGCTGCCCGCCCGCGTCTGGCTGCCCACTGCAGCCTTCGACCACCACGTGGTGCGCATGCCCCACACACAGGCCGTGGTGCTCAACTCCAAAGACAAGgccccATACATCATCTACGTGGAGGTGCTGGAGTGCGAGAGGTTTGAGACATCCGGCATTCCCCTGCGCATCCCAGAGACACGCATCCGCAGTGCCCGCTCTGCGGACAACCTCCTCCCGGAGTGCATTGGCATCACAGCCGAGCAGCGCGCCGTCAGCTTCTCCACTGTGCCCAACTACGACAACGACGACGAGGCCTGGTCCGTGGATGACATTGGCGAGCTGGAAGTGGAGCTCCCAGAAGGCCACACCAGTAGCAGTGACAACATTTCCCAGTTCTCTGTGGACAGCATCACCAGCACGGAGAGCAAGGAGCCTGTCTTCATGGCCGCCGGCGACATCAGGCGACGTCTGTCAGAGAACCTGGCCCACACCCCCACAACGTTCCGGAAAGATCCAGAGGACCCGTCCGCTGTGGCGCTCAAGGAGCCCTGGAAGGAGAAAGTCAGgcGGATAAGGGAGGGCTCCCCTTACGGTCACTTGCCAAACTGGCGGCTGCTGTCAGTCATTGTGAAGTGTGGGGACGACCTGAGGCAAGAGCTACTGGCCTTCCAGGTGCTCAGCCAGCTACAGtCCATCTGGGAGCAGGAGCGCGTCCCCCTGTGGATCAAGCCCTATAAGAtcctggtgatgtcatcagacAGCGGGATGATTGAGCCTGTGCTGAACGCTGTGTCTCTGCACCAGGTGAGGAAGCAGAGCCAGCTGTCTCTGCTGGATTACTTCCTGCAGGAGCATGGCAGTTACACCAACGAGGCCTTCCTCACCGCCCGGCGCAACTTTGTGGAGAGCTGCGCCGGCTACAGTCTCATCTGCTACCTGCTGCAGGTTAAAGACAGACACAATGGAAACATCCTCCTAGACTCGGAGGGCCACATCATCCACATTGACTTTGGCTTCATCCTGTCCAGTTCTCCCAGGAACCTGGGCTTTGAGACCTCTGCTTTTAAGCTCACCAGTGAATTTGTGGATGTGATGGGAGGCCTGGATGGAGACATGTTCAACTACTACAAGGTGCTGATGCTCCAGGGTCTGATCGCTGCTCGCAAACACATGGAGAAGGTGGTCCAAATAGTGGAGATCATGCAGCAAGgCTCTCACCTGCCCTGCTTCCATGGCTCCAGCACCATCCGCCACCTGAAGGAGCGTTTCCACATGAGCCTGACGGAGGAGCAGCTACAGGTGCTGGTGGAGCAGATGGTGGATGGCTCCATGCGCTCCATCACCACCAAGCTTTACGACGGCTTCCAGTACTTCACCAACGGCATCATGTGAACAGTTCCCACCAAACTCTACCACATGGGACAACCACATGTGCGAGCAAGCGAACATGCATATAAAGATGGTGGTAACCTGTGCATATGGACTCACGCATGTGTGCTTGCCATAGCAGCACATTTAGGGAAATGGACTCTTGTATAGACAAGTGCAACAAGGTCCTGTTTGTGAACTATGTATGTTCTTTGTCTTAGACGGACCTCTGTTTTCCCCCTCCTTGTTTTGGCCTTGTGGAGGGGGGAGTCcgcaccttctctccctcttgtcCTCCTATCCATAGGACTTTTAGCGCATTGACTGTTCTAAAACGAGGCATAACGCACAGTTCAAATCACACACACGAAAAGGATTTATGTATCAATATCGGAGGAGGTACTTCATTTGAAAGGGGGAGGGGCAACACTGGAGAGGGTGTGGTCTATATTCAGAGGAGTCAAGAAGACTTATCAGAATGGATGAAAGACGAATAACTGTGGACCAATTGTGCAAGAGCGTCACAAAGCAGTGCATATTGAATATATTGACTTATTTTTGTTCTTAGACAGCATAATGGACTTTGAGAAGCCACTGTGTAACGACAAAGAAAGCACAAGACATATCATTTGCGGACGTTTTCTAATGGACATTCTCTTTGTTCTCTGAAAATTCCTATGGTTATCAAGAATGAGCCAGCCcgaagagagggggggaaaaaagGACTATTAAAAACCATTGGTGTATGAGTGTTATCTGTCAGGGAAAACAACTCCTTAATCCAAGGTTTAATGCATTTTGAACAATGTTTAAACTGGAAAGTTATGAACTAGGACCAACTCCTCTCTTATTAGGGGTCCAAGCATATGCAGCAAAGCTGCTGGTTGTATGTGTTTTTGTTCCCATCCTTGATAACAGGTGCAGTTTCATTTCAATCTGGGTTTTGGACAACTGGGGCTCGTTCAGTAGAGCACATCTGTAACACATTTAGTGTTATAGATAGAAATACCATGAAATAGAAAGTTCTTTATCTCAGTTCTCCAGGGACTCTTGTCCTTACTGAATAAGCACCAAGCATCACAGACGATCAGGAAAGGGCAGAATGTTTTACCATTTAATATGCCGACTGTGTTATACCAACATGAATCATGTAGAACTTTGCTTTGCTTGTTTCACTCTTTAAACCACCATACTTGAAGGAACGCTAGCATAGTGATGAGCCTCATGCACTTGAGTTATGTTGAACCAAAATGGCTACCTGTGGTTAAATTTATGCAAACACTCAACATTGATGTTCCACTAATCTCTAACGAAATGTGATTATTAATGCATTATTATTGTATGTTTTGTTAACTTAGGTTGCATATTTAAAGAATGCTCAACACTTTCCTCTCTGGTTGGCTCAGATGTATTCCTGTGAATAACACGGGCCAATCTAGAGCGAGGGTTGTCCTTGAGCAGATTATGTAAATAATGGGAGTGATTTCTCATTCCTGTCCGTTTGTCTTGGTCTGTTTTATTTCTCCTTTGTTTTGAACAGTATGAGCTCACTATCACAAGTCTACTTCCTTTGTGACTTTTTTTTAAttataaactttttttttctttttcttgcGGTCTCAAACACACGTATTCAGTATTGAAGAGAGTGGTTTCAAGAGCTACATGCTTGGATAGCCTATAACTTATATTACCTGCTCATGTCTCATGTTTGAAAGCTGAGTCGTTGGTGGGGGGGCTTTTGTGTGTAGCAAAAGTGACAACTTTTCTCTCATGCAGTCATTCCTGTGAGAGAACCGATGCCTTGACGTACAAGAGGTACAACTTTTATCAATGCAACAGTTGGGACAAGGGCATGCAGGTCATGGACCCAGGAAGTGCTTTTATCAGAAGTTGAACACTCCTGCTTACTCTTCTCTAAACACTACTACTGCATTGCTTTTCCCTTCATTAATTCCAACCCTAACCTTATTCTATAAAGTGCATTTTATCTTTGCTGGAGCGGGTGCTGTCCGTCAAACCTTTGTGTTGATTTTGATGTCTCCCCATTGAGAAGCAGAATTTTGTCCTTGtccagtgtcacaccagatacatgCTTGTCCGTTCAGATGACACTGAGGCCAAGGGCTAAATTCAGACTGCTccagatagaaatgtattgtatagATCACTTGTTTTCAAATAGAAAGTGATGTCTGCTCTATATGAATGTTTTTTTTGCCTTCTAAGTTCTGAACATTGTGCCCTCCTGAAAGAGACATGGGTTTTATACAGAATTGGTCCACACAAAGCAAAGCATTTTTTTCCAGTAATTAACTGTGGTTGATATGGAGTGCCTTTGTCCTTGATACTAAAGACATTTAGAATGTACAGGGGAAGCAATTGTCTACTTTGCATTGTATCAAAACACTAACACTTAAGCTGTCTGATTGTTTAACTTTTCATTTGTGGTTGAGACTAAATGCATGACTCGTTCAATAAATCAAATAGTTTTTTAACGTGTGATAATTTACATATTCAGACTAGTCATTTGTGTTGCAGTAGGTTTCTAGTTTCCCAATTAAATGACATTCCACTCTGCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0060872 semicircular canal development biological_process
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0030867 rough endoplasmic reticulum membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004430 1-phosphatidylinositol 4-kinase activity molecular_function

KEGG:

id description
K19801 PI4KB; phosphatidylinositol 4-kinase B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560472.2 True 5813 mRNA 0.48 12 31828188 31855884

Neighbor

gene id symbol gene type direction distance location
LOC110488296 LOC106569903 coding upstream 1242 31814827 ~ 31826946 (+)
LOC110488287 LOC106569900 coding upstream 116672 31700650 ~ 31711516 (+)
LOC118946484 jtb coding upstream 207049 31617119 ~ 31621139 (+)
glmp glmp coding upstream 229940 31592958 ~ 31598248 (+)
LOC110488282 LOC106569895 coding upstream 235433 31579007 ~ 31592755 (+)
LOC110488300 LOC106569907 coding downstream 12091 31867975 ~ 31888423 (+)
LOC110488301 LOC106569908 coding downstream 34183 31890067 ~ 31909751 (+)
LOC110488305 LOC106569913 coding downstream 79046 31934883 ~ 31988737 (+)
LOC110488302 LOC106569910 coding downstream 99781 31955665 ~ 31968396 (+)
LOC110488308 LOC106569916 coding downstream 365039 32220923 ~ 32353844 (+)
G2318732 NA non-coding upstream 19212 31808885 ~ 31808976 (+)
G2318723 NA non-coding upstream 19504 31807330 ~ 31808684 (+)
G2318718 LOC106570158 non-coding upstream 46215 31780433 ~ 31781973 (+)
G2318688 NA non-coding upstream 86182 31741468 ~ 31742006 (+)
G2318685 NA non-coding upstream 88467 31739502 ~ 31739721 (+)
G2318776 NA non-coding downstream 90762 31946646 ~ 31952499 (+)
G2318851 tp8l2 non-coding downstream 183806 32039690 ~ 32041826 (+)
G2319106 NA non-coding downstream 236245 32092129 ~ 32092383 (+)
LOC110488286 chtop other upstream 487657 31334757 ~ 31340531 (+)
G2317685 LOC106569887 other upstream 604626 31222117 ~ 31223562 (+)
G2317562 LOC100196669 other upstream 700501 31097619 ~ 31127687 (+)
G2317455 NA other upstream 993087 30833730 ~ 30835101 (+)
G2318792 NA other downstream 97738 31953622 ~ 31954513 (+)
G2319921 NA other downstream 1086319 32942203 ~ 32943392 (+)
LOC110487593 LOC106570137 other downstream 1313579 33166851 ~ 33175323 (+)
G2320160 NA other downstream 1595275 33451159 ~ 33451620 (+)

Expression


Co-expression Network