LOC110489447 (LOC106570022)


Basic Information

Item Value
gene id LOC110489447
gene name LOC106570022
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 32366574 ~ 32369564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562155.2
TTACTAGTAGTGACGTTACTAGCTAGCTTGATATGTTTTACGTCCTGACAATTGTTTGTTTGTATTCCTCCTACTAATTTTAGAATCAAATGTACTGGATGAGATCCAGTTGGATGTGCCACTGCTGCCAGTCATCCTTGATGTCCAGGATGCTGCTATCATCCTTGAGGATGTGCCAGATGTACCGACTATCCTTGAGGAGGCCACTGGTAATTGGCAGTTGATACCGATTAGGTTCAGCCCCCTGTACTGTGGGCCTGTTGTGATCAGAAACCATGCCGGTCCAGTGGCTAAAGCTTGGAGAACTTTCCAGTTCATCAGCCCCATTATCACCTATATGCGTGGGGGATCCCAGCAGGTGGTGGTGAGGAGGCACCATGTGAGTAGGGTTCGAGGCCTGGAGACTCAACTGGTGTGGGCCATCTCCAGGGAGACAGCCAGACTTAGTTCAGAGGGCATCCCCTACTGTGCCACCAAGGTTCAGTCCGTCACTTGGATCCTGtatgTGGCTGGCAGGGTGACCCAGTATGCTTCTCACCTCCGCCATGAGACGTCTGTGGACATGACCCTTGGCTGCTACCAGCAGACTGATGTCTCGGTGGTGTATGCCACTCTGCACATGGGGCCGGATGGGCTGCTCTCCTCCTCGGCGTGGTCGGAGGCTGCCTCCGTGTCTACGCCCACCAATCAGCAGTTCACGGAGCCAGAGCCTGAGGGCCACAACTGCTATGAGGGCTGGGAGGAGGACCTGCTGCCTGAGGAGAGGGAGGTTCCTCTGCTAAAccTCTACCTTACCACCAAGAGAGTGGAGGACATCGCCCTGAGGCTCGTCTCCCTGCGCCAGGCCTTCACTACCCTGCTTGGTTCCACCCTGAGCAGGAACCATCTGTTTGTGGCAGGAAAGGTCCTAATGGGCGCACTGGTTCAGGCCCACCACATGGACGAGGCCGAATTCATCCGTGCCTATAACGACTTTGTGGACTACCTGAGTGACCCCTCCAAGCAGATTGACATTGAGAGGGAGCTGGCTGAGGCAAAGATCCATCATGTTAACCTGATAGATGTCCTCTTTGAactggtgctatttgggatgatGACAGCTCAGAAGTCCCTGATGGTGCACCCTGGTGGGTTCATGGAGCGTCTGTACGCTCTCCTGTACTCCTTCCTGCCCGTAGCTGCCAGCATTGAGCCAAAGGCCGAGAGATACCTGCTGCTGCTCAATGTAAGATTCAAGAGTTTACTTCCCTATTCCTAGTTTACTTCCTCTTTACTTTGTCATGAATAACAGGGTTTCAATGCCATTTTACGAGGAGTAACTCTCATTGTCTC
>XM_021562152.2
TTACTAGTAGTGACGTTACTAGCTAGCTTGATATGTTTTACGTCCTGACAATTGTTTGTTTGTATTCCTCCTACTAATTTTAGAATCAAATGTACTGGATGAGATCCAGTTGGATGTGCCACTGCTGCCAGTCATCCTTGATGTCCAGGATGCTGCTATCATCCTTGAGGATGTGCCAGATGTACCGACTATCCTTGAGGAGGCCACTGGTAATTGGCAGTTGATACCGATTAGGTTCAGCCCCCTGTACTGTGGGCCTGTTGTGATCAGAAACCATGCCGGTCCAGTGGCTAAAGCTTGGAGAACTTTCCAGTTCATCAGCCCCATTATCACCTATATGCGTGGGGGATCCCAGCAGGTGGTGGTGAGGAGGCACCATGTGAGTAGGGTTCGAGGCCTGGAGACTCAACTGGTGTGGGCCATCTCCAGGGAGACAGCCAGACTTAGTTCAGAGGGCATCCCCTACTGTGCCACCAAGGTTCAGTCCGTCACTTGGATCCTGtatgTGGCTGGCAGGGTGACCCAGTATGCTTCTCACCTCCGCCATGAGACGTCTGTGGACATGACCCTTGGCTGCTACCAGCAGACTGATGTCTCGGTGGTGTATGCCACTCTGCACATGGGGCCGGATGGGCTGCTCTCCTCCTCGGCGTGGTCGGAGGCTGCCTCCGTGTCTACGCCCACCAATCAGCAGTTCACGGAGCCAGAGCCTGAGGGCCACAACTGCTATGAGGGCTGGGAGGAGGACCTGCTGCCTGAGGAGAGGGAGGTTCCTCTGCTAAAccTCTACCTTACCACCAAGAGAGTGGAGGACATCGCCCTGAGGCTCGTCTCCCTGCGCCAGGCCTTCACTACCCTGCTTGGTTCCACCCTGAGCAGGAACCATCTGTTTGTGGCAGGAAAGGTCCTAATGGGCGCACTGGTTCAGGCCCACCACATGGACGAGGCCGAATTCATCCGTGCCTATAACGACTTTGTGGACTACCTGAGTGACCCCTCCAAGCAGATTGACATTGAGAGGGAGCTGGCTGAGGCAAAGATCCATCATGTTAACCTGATAGATGTCCTCTTTGAactggtgctatttgggatgatGACAGCTCAGAAGTCCCTGATGGTGCACCCTGGTGGGTTCATGGAGCGTCTGTACGCTCTCCTGTACTCCTTCCTGCCCGTAGCTGCCAGCATTGAGCCAAAGGCCGAGAGATACCTGCTGCTGCTCAATGATTCTTGCGACACTTTGCCACCACACAGGGGTCTAGACACAAATGCACTATATTACTTTGCACTGAATTTTACATTTCTAAATAAAATAACTAGTAGTTCAAAAGCATTTGTCTCTGTCTTTTCATTTACTTGATTATTTCATCACTATTTCCTATTCCTGGAGT

Function

NR:

description
uncharacterized protein LOC110488310 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562155.2 False 1332 mRNA 0.53 12 32366574 32369065
XM_021562152.2 True 1391 mRNA 0.52 13 32366574 32369564

Neighbor

gene id symbol gene type direction distance location
LOC110488308 LOC106569916 coding upstream 12730 32220923 ~ 32353844 (+)
LOC110488302 LOC106569910 coding upstream 398178 31955665 ~ 31968396 (+)
LOC110488305 LOC106569913 coding upstream 427861 31934883 ~ 31988737 (+)
LOC110488301 LOC106569908 coding upstream 456823 31890067 ~ 31909751 (+)
LOC110488300 LOC106569907 coding upstream 478151 31867975 ~ 31888423 (+)
LOC118946529 LOC106569920 coding downstream 2242 32371806 ~ 32372537 (+)
LOC118946466 LOC106570022 coding downstream 2990 32372554 ~ 32376549 (+)
LOC110488310 LOC106570022 coding downstream 7491 32373725 ~ 32388367 (+)
LOC118946461 NA coding downstream 25500 32395064 ~ 32398502 (+)
LOC110488315 NA coding downstream 84343 32453907 ~ 32459072 (+)
G2319356 NA non-coding upstream 8658 32357424 ~ 32357916 (+)
G2319106 NA non-coding upstream 274191 32092129 ~ 32092383 (+)
G2318851 tp8l2 non-coding upstream 324748 32039690 ~ 32041826 (+)
G2319371 NA non-coding downstream 12116 32381680 ~ 32382325 (+)
G2319374 NA non-coding downstream 18974 32388538 ~ 32388739 (+)
G2319381 NA non-coding downstream 22904 32392468 ~ 32392842 (+)
G2318792 NA other upstream 412061 31953622 ~ 31954513 (+)
LOC118946484 jtb other upstream 745437 31617119 ~ 31621139 (+)
LOC110488286 chtop other upstream 1026043 31334757 ~ 31340531 (+)
G2317685 LOC106569887 other upstream 1143012 31222117 ~ 31223562 (+)
G2319921 NA other downstream 572639 32942203 ~ 32943392 (+)
LOC110487593 LOC106570137 other downstream 799899 33166851 ~ 33175323 (+)
G2320160 NA other downstream 1081595 33451159 ~ 33451620 (+)
G2321378 LOC106569991 other downstream 1967546 34337110 ~ 34354024 (+)
G2321656 LOC105025880 other downstream 2479614 34849178 ~ 34850391 (+)

Expression


Co-expression Network