LOC118946529 (LOC106569920)


Basic Information

Item Value
gene id LOC118946529
gene name LOC106569920
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 32371806 ~ 32372537 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041401.1
ttttgttgtCTTTTTCCGTTTTGCAGGGTTCGCGATCGTCGGGAGGTGGACAGTGACTTCGAAGAGGAATCAAATGTACTGGATGAGGTCCAGTTGGATGTGCCACTGCTGCCAGTCATCCTTGATGTCCAGGATGCTGCTATCATCCTTGAGGATGTGCCAGATGTACCGACTATCCTTGAGGAGGCCACTGGTAATTGGCATTTGATACCGATTAGGTTCAGCCCCCTGTACTGTGGGCCTGTTGTGATCAGAACCCATGCCGGTCCGGTGGCTAAAGCTTGGAGAACTTTCCAGTTCATCAGCCCCATTATCACCTATATGC

Function

NR:

description
uncharacterized protein LOC110488310 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041401.1 True 325 mRNA 0.50 4 32371806 32372537

Neighbor

gene id symbol gene type direction distance location
LOC110489447 LOC106570022 coding upstream 2242 32366574 ~ 32369564 (+)
LOC110488308 LOC106569916 coding upstream 17962 32220923 ~ 32353844 (+)
LOC110488302 LOC106569910 coding upstream 403410 31955665 ~ 31968396 (+)
LOC110488305 LOC106569913 coding upstream 433093 31934883 ~ 31988737 (+)
LOC110488301 LOC106569908 coding upstream 462055 31890067 ~ 31909751 (+)
LOC118946466 LOC106570022 coding downstream 17 32372554 ~ 32376549 (+)
LOC110488310 LOC106570022 coding downstream 4518 32373725 ~ 32388367 (+)
LOC118946461 NA coding downstream 22527 32395064 ~ 32398502 (+)
LOC110488315 NA coding downstream 81370 32453907 ~ 32459072 (+)
LOC110488320 NA coding downstream 236748 32609285 ~ 32614559 (+)
G2319356 NA non-coding upstream 13890 32357424 ~ 32357916 (+)
G2319106 NA non-coding upstream 279423 32092129 ~ 32092383 (+)
G2318851 tp8l2 non-coding upstream 329980 32039690 ~ 32041826 (+)
G2318776 NA non-coding upstream 419307 31946646 ~ 31952499 (+)
G2319371 NA non-coding downstream 9143 32381680 ~ 32382325 (+)
G2319374 NA non-coding downstream 16001 32388538 ~ 32388739 (+)
G2319381 NA non-coding downstream 19931 32392468 ~ 32392842 (+)
G2318792 NA other upstream 417293 31953622 ~ 31954513 (+)
LOC118946484 jtb other upstream 750669 31617119 ~ 31621139 (+)
LOC110488286 chtop other upstream 1031275 31334757 ~ 31340531 (+)
G2317685 LOC106569887 other upstream 1148244 31222117 ~ 31223562 (+)
G2319921 NA other downstream 569666 32942203 ~ 32943392 (+)
LOC110487593 LOC106570137 other downstream 796926 33166851 ~ 33175323 (+)
G2320160 NA other downstream 1078622 33451159 ~ 33451620 (+)
G2321378 LOC106569991 other downstream 1964573 34337110 ~ 34354024 (+)
G2321656 LOC105025880 other downstream 2476641 34849178 ~ 34850391 (+)

Expression


Co-expression Network