LOC110488310 (LOC106570022)


Basic Information

Item Value
gene id LOC110488310
gene name LOC106570022
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 32373725 ~ 32388367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971004.1
TTGAACGTTTTCTGTTCGAAAACAAGAACAACTTCAATTTGCTGTTTAACAACAACAAACTTGACTGATTTTTGAGACCTGAGATTGAAAAATCGACTGGAAAATGCCTGGGTGTTTTTCAAGATTGATGGAGAGAGTGCGAGGACGTGGGCAGCCTTCTGCGTCGACAGGTTGTGTAAATTCATTTGTGGGTTGTTTTTGTTGTCTTTTTCCGTTTTGCAGGGTTCGCGATCGTCGGGAGGTGGACAGTGACTTCGAAGAGGAATCAAATGTACTGGATGAGGTCCAGTTGGATGTGCCACTGCTGCCAGTCATCCTTGATGTCCAGGATGCTGCTATCATCCTTGAGGATGTGCCAGATGTACCGACTATCCTTGAGGAGGCCACTGGTAATTGGCATTTGATACCGATTAGGTTCAGCCCCCTGTACTGTGGGCCTGTTGTGATCAGAACCCATGCCGGTCCGGTGGCTAAAGCTTGGAGAACTTTCCAGTTCATCAGCCCCATTATCACCTATATGCGTGGGGGATCCCAGCAGGTGGTGGTGAGGAGGCACCATGTGAGTAGGGTCCGAGGCCTGGAGACTCAACTGGTGTGGGCCATCTCCAGGGAGACAGCCAGACTTAGTTCAGAGGGCATCCCCTACTGTGCCACCAAGGTTCAGTCCGTCACTTGGATCCTGtatgTGGCTGGCAGGGTGACCCAGTATGCTTCTCACCTCCGCCATGAGACGTCTGTGGACATGACCCTTGGCTGCTACCAGCAGACTGATGTCTCGGTGGTGTATGCCACTCTCCACATGGGGCCGGATGGGCTGCTCTCCTCCTCGGCGTGGTCGGAGGCTGCCTCCGTGTCTACGCCCACCAATCAGCAGTTCACGGAGCCAGAGCCTGAGGGCCACAACTGCTATGAGGGCTGGGAGGAGGACCTGCTGCCTGAGGAGAGGGAGGTTCCTCTGCTAAAccTCTACCTTACCACCAAGAGAGTGGAGGACATCGCCCTGAGGCTCGTCTCCCTGCGCCAGGCCTTCACTGACGAGGCCGAATTCATCCGTGCCTATAACGACTTTGTGGACTACCTGAGTGACCCCTCCAAGCAGATTGACATTGAGAGGGAGCTGGCTGAGGCAAAGATCCATCATGTTAACCTGATAGATGTCCTCTTTGAactggtgctatttgggatgatGACAGCTCAGAAGTCCCTGATGGTGCACCCTGGTGGGTTCATGGAGCGTCTGTACGCTCTCCTGTACTCCTTCCTGCCCGTAGCTGCCAGCATTGAGCCAAAGGCCGAGAGATACCTGCTGCTGCTCAATGATTCTTGCGACACTTTGCCACCACACAGGGGTCTAGACACAAATGCACTATATTACTTTGCACTGAATTTTACATTTCTAAATAAAATAACTACCACCAGAGATCGAGGCAGGGATGGCCACCAGAGATCGAGGCAGGGATGGCCACCAGAGATCGAGGCAGGGATGGCCACCAGAGATCGAGGCAGGGATGGCCACCAGAGATCGAGGCAGGGATGGCCACCAGAGATCGAGGCAGGGATGGCCACCAGAGATCGAGGCAGGGATGGCCACCAGAGATCGAGGCAGGGATGGCCACCAGAGATCGAGGCAGGGATGGCCACCAGTTCCAGCTGA
>TU2652695
CTCTAGACCCTGCTTGGTTCCACACTGAGCAGGAACCATCTGTTTGTGGCAGGAAAGGTCCTAATGGGCGCACTGGTTCAGGCCCACCACATGGTAACTCCTTATTCATTCAAGGGAAAGAGAGCGTCCTCGATGGGAAATGTGTTCTGTTCACTAACGTCAATGCTCTTTGCTTTGTGATAGGACGAGGCCGAATTCATCCGTGCCTATAACGACTTTGTGGACTACCTGAGTGACCCCTCCAAGCAGATTGACATTGAGAGGGAGCTGGCTGAGGCAAAGGTGAGTTCATTAACTCTTTCAAGTCTCACTTTGAGTTCTTCCACATGCATGTCTTTTATACATCACAGTAGCTGATCTATTTGAAATCATTCCTATTTTCTCCAAACGTGTTTCCTTGTCCTAGAT
>TU2652698
AAAATGCCTGGGTGTTTTTCAAGATTGATGGAGAGAGTGCGAGGACGTGGGCAGCCTTCTGCGTCGACAGGTTGTGTAAATTCATTTGTGGGTTGTTTTTGTTGTCTTTTTCCGTTTTGCAGGGTTCGCGATCGTCGGGAGGTGGACAGTGACTTCGAAGAGGAATCAAATGTACTGGATGAGGTCCAGTTGGATGTGCC

Function

NR:

description
uncharacterized protein LOC110488310 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971004.1 False 1654 mRNA 0.54 14 32377055 32388367
TU2652695 False 408 lncRNA 0.46 2 32373725 32379575
TU2652698 True 200 lncRNA 0.49 2 32377155 32377575

Neighbor

gene id symbol gene type direction distance location
LOC118946466 LOC106570022 coding upstream 506 32372554 ~ 32376549 (+)
LOC118946529 LOC106569920 coding upstream 4518 32371806 ~ 32372537 (+)
LOC110489447 LOC106570022 coding upstream 7491 32366574 ~ 32369564 (+)
LOC110488308 LOC106569916 coding upstream 23211 32220923 ~ 32353844 (+)
LOC110488302 LOC106569910 coding upstream 408659 31955665 ~ 31968396 (+)
LOC118946461 NA coding downstream 6697 32395064 ~ 32398502 (+)
LOC110488315 NA coding downstream 65540 32453907 ~ 32459072 (+)
LOC110488320 NA coding downstream 220918 32609285 ~ 32614559 (+)
LOC110488322 LOC106569928 coding downstream 272650 32660576 ~ 32683300 (+)
LOC110489432 col14a1 coding downstream 297320 32685687 ~ 32782036 (+)
G2319356 NA non-coding upstream 19139 32357424 ~ 32357916 (+)
G2319106 NA non-coding upstream 284672 32092129 ~ 32092383 (+)
G2318851 tp8l2 non-coding upstream 335229 32039690 ~ 32041826 (+)
G2318776 NA non-coding upstream 424556 31946646 ~ 31952499 (+)
G2319374 NA non-coding downstream 171 32388538 ~ 32388739 (+)
G2319381 NA non-coding downstream 4101 32392468 ~ 32392842 (+)
G2319419 LOC106569924 non-coding downstream 70851 32459218 ~ 32461907 (+)
G2319432 NA non-coding downstream 90417 32478784 ~ 32479552 (+)
G2318792 NA other upstream 422542 31953622 ~ 31954513 (+)
LOC110488305 LOC106569913 other upstream 435141 31934883 ~ 31988737 (+)
LOC118946484 jtb other upstream 755918 31617119 ~ 31621139 (+)
LOC110488286 chtop other upstream 1036524 31334757 ~ 31340531 (+)
G2317685 LOC106569887 other upstream 1153493 31222117 ~ 31223562 (+)
G2319921 NA other downstream 553836 32942203 ~ 32943392 (+)
LOC110487593 LOC106570137 other downstream 781096 33166851 ~ 33175323 (+)
G2320160 NA other downstream 1062792 33451159 ~ 33451620 (+)
G2321378 LOC106569991 other downstream 1948743 34337110 ~ 34354024 (+)
G2321656 LOC105025880 other downstream 2460811 34849178 ~ 34850391 (+)
G2319371 NA non-coding downstream 2105 32381680 ~ 32382325 (+)

Expression


Co-expression Network