LOC110488327 (LOC106569936)


Basic Information

Item Value
gene id LOC110488327
gene name LOC106569936
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 32891743 ~ 32907337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560530.2
TCGACTAGTACGTGAACGCGGCGGTAATCGGTTGTAACAGACCGGATTTTGTGGAGGTTGGGGGTATTCAGTTGCTGTACCTCAAACACATGCTGTACCTCTCAAGGAAACTGTAAAAACGTAGTTCACAAAATGTATACGTTTatattatttgttttttatttctcGACGGAATGTATTGTTCAGAGCCAAAGCGTGATCTACATCTACACTGCCCTCTCAAAGCCAGTTGAATTGcctggtatccatgagttcactGCCATGGGCCTGATGAATAATAGACAGATCGATTACTATGACAGTGTGGATAAAAAGAAGATTCCCAAACAGGACTGGATGAGGGACAAGCTGCCAGCAGACTACTGGGAAAAAGGCACTCAGTCACGCAAGAGCAAGGAGCAGTGGTTCAAAGTAAACGTCGACATCCTGATGAACCGCATGAGGCACAACAACACTGATGTCCATATCCTTCAGTGGAGGCATGGCTGTGAGATTGACAAACAGCCAGACGGCACATTGAAATTCATAAAGGGCACTGACCAATACAGCTACGATGGTGACGACTTCCTGGCCTTTGACGATGCCAATATGCAGTGGGTGGCCCCAGTTGATCAAGCTCTGCCGACTAAGAGGAAGTGGGACGGGGTGCAGATCCTCAACCAGTACACCAAGGGCTACCTGGAGAAGGAGTGTGTGGACTGGCTGTCCAAATTCATGACATATGGGGACAAAGAATTCAGTAAAGCTGACTCCCCTCCAAATATCTATGTTTTTGCTAATAAGGCCAAAACTGCAGGAAATGTCCGCCTGACCTGCATGGCGACAGGTTTCTATCCCAAAGATGTGAATATTAATTTTAAGAAGAACGGTATCCAACTGAACAAAAACGATGGAGTGCTGTCTACAGGAGCCCGACCCAATAATGATGACACCTACCAGATCAGGATGAGTGTGCAGATCCCAGAGGCAGACAAGCAAACTTATGAATGCTTTGTCAACCATATAACGTTGAACGAGTCAATTATGGAAAAATGGGATGGAACATGCCGTGATTGTAGCCAATCCACAGATGCTATCATTGCTATCATCATTGGTGGCGCTGCTGCCATTGGCATAATTATCGTGCTGTTTCGTTGGAAGAAGGGCAAAATATGTGCTGGTAATACAGGAGCTCTACCACCTACTGGGATCCAGGCCCCTCTAAATGGCAAAGACAGTGGAAGCATCAACTCATCAGACTCTGGTAAAGGCAGCCAGAAGGAAAGGTCTTCAGATGGAGCCAGTGAGGAGGCACCGATGCTGCCTATTTGAAGTGGCTAGATGTCTTGGTGGGGAAACTTCCTGACCGGACCGGTCAATTCATTTCATATTATGGCTATTGATAATGCTTGTTATTCAGTTACACTGCTCAATTCTTATAAGCTTGTGATGGAAATGATAGTTACTTATAGTTACAGTTAGTATGTGCTGAAAAGTGCTGCATTTAATAGTGTTTGCTGTTCTTAGGTAAGGTTCTGTACTTCCAAATACACTCAATAGTTGGTGGTTAGGTACCGGTCGGCTCGATGTGTACATTTCTCTTCAATGAATTTATTCTGTGGTACATTTCATGTTTTACTGTTACACTGGATGTTACTGTATGGAGAGAGGTTAACGCACAATGAAAAGGCATCTTTACAGTATTTGTATCAGTCTTCAGGGATTATAACTAGACCTGTACTAGATCAGGGTTATATAGGCTGAGAagtatactgtatgtttgtatgttttCATACCTCTGGTCTCTGCCCAATCGGTGACAACCTCTTCTTTTAGGGAACATTTCAAAAGAGTTCTAGACAAACATCTTCAGTAATATTTTGAGTAACAAAAAAGCTCTACAACATATTTACTGTATGTGTTTCATGACTGTTTTTACcatattgtatatatttttttaagttcctgcaaataaatataaaaaaatatgatgTTTAATATTGTAAAGTATTGTTAATACTTTGGGTATTTGCAATATAATATTTTAAGATCGTTTTTTTAAACTTAGGGCCATTTCAAAACCTTTCACTGGGCTGCTAAGCTAAGACAAATCTACACTCTTGAATTAATACGTAGTGGAATTTCTGTTAATATCACATTGTAAACATTGTTTTATCGAGGACACAAATAATCCCAACATGCAGTCTTGAAGCGCAGGATTTAAATAGTTTCTCTTATCACAGAAACCTggtcagtgtttttttttaataggGCCTGTTGTGTTATTTCAATAATTTTGCATGGCATTGCTCTGCTACTATGTACTAACCCGTATGTTACATCACTTATTACATGCCCACGGATgcacgcagaaacacacacacacacacacaatggttaTAACCTGTAAATGCTTTTAAAATATCCtgtatgatttatttttttatgacagaaaaataaaataatt
>XM_036971766.1
TTCGACTAGTACGTGAACGCGGCGGTAATCGGTTGTAACAGACCGGATTTTGTGGAGGTTGGGGGTATTCAGTTGCTGTACCTCAAACACATGCTGTACCTCTCAAGGAAACTGTAAAAACGTAGTTCACAAAATGTATACGTTTatattatttgttttttatttctcGACGGAATGTATTGTTCAGAGCCAAAGCGTGATCTACATCTACACTGCCCTCTCAAAGCCAGTTGAATTGcctggtatccatgagttcactGCCATGGGCCTGATGAATAATAGACAGATCGATTACTATGACAGTGTGGATAAAAAGAAGATTCCCAAACAGGACTGGATGAGGGACAAGCTGCCAGCAGACTACTGGGAAAAAGGCACTCAGTCACGCAAGAGCAAGGAGCAGTGGTTCAAAGTAAACGTCGACATCCTGATGAACCGCATGAGGCACAACAACACTGATGTCCATATCCTTCAGTGGAGGCATGGCTGTGAGATTGACAAACAGCCAGACGGCACATTGAAATTCATAAAGGGCACTGACCAATACAGCTACGATGGTGACGACTTCCTGGCCTTTGACGATGCCAATATGCAGTGGGTGGCCCCAGTTGATCAAGCTCTGCCGACTAAGAGGAAGTGGGACGGGGTGCAGATCCTCAACCAGTACACCAAGGGCTACCTGGAGAAGGAGTGTGTGGACTGGCTGTCCAAATTCATGACATATGGGGACAAAGAATTCAGTAAAGCTGACTCCCCTCCAAATATCTATGTTTTTGCTAATAAGGCCAAAACTGCAGGAAATGTCCGCCTGACCTGCATGGCGACAGGTTTCTATCCCAAAGATGTGAATATTAATTTTAAGAAGAACGGTATCCAACTGAACAAAAACGATGGAGTGCTGTCTACAGGAGCCCGACCCAATAATGATGACACCTACCAGATCAGGATGAGTGTGCAGATCCCAGAGGCAGACAAGCAAACTTATGAATGCTTTGTCAACCATATAACGTTGAACGAGTCAATTATGGAAAAATGGGATGGAACATGCCGTGATTGTAGCCAATCCACAGATGCTATCATTGCTATCATCATTGGTGGCGCTGCTGCCATTGGCATAATTATCGTGCTGTTTCGTTGGAAGAAGGGCAAAATATGTGCTGGTAATACAGGAGCTCTACCACCTACTGGGATCCAGGCCCCTCTAAATGGTGCTGGTTATACAGGAGCTCTACCACCTACTGGGATCCAGGCCCCTCTAAATGGTGCTGGTTATACAGGAGCTCTACCACCTACTGGGATCCAGGCCCCTCTAAATGGCAAAGACAGTGGAAGCATCAACTCATCAGACTCTGGTAAAGGCAGCCAGAAGGAAAGGTCTTCAGATGGAGCCAGTGAGGAGGCACCGATGCTGCCTATTTGAAGTGGCTAGATGTCTTGGTGGGGAAACTTCCTGACCGGACCGGTCAATTCATTTCATATTATGGCTATTGATAATGCTTGTTATTCAGTTACACTGCTCAATTCTTATAAGCTTGTGATGGAAATGATAGTTACTTATAGTTACAGTTAGTATGTGCTGAAAAGTGCTGCATTTAATAGTGTTTGCTGTTCTTAGGTAAGGTTCTGTACTTCCAAATACACTCAATAGTTGGTGGTTAGGTACCGGTCGGCTCGATGTGTACATTTCTCTTCAATGAATTTATTCTGTGGTACATTTCATGTTTTACTGTTACACTGGATGTTACTGTATGGAGAGAGGTTAACGCACAATGAAAAGGCATCTTTACAGTATTTGTATCAGTCTTCAGGGATTATAACTAGACCTGTACTAGATCAGGGTTATATAGGCTGAGAagtatactgtatgtttgtatgttttCATACCTCTGGTCTCTGCCCAATCGGTGACAACCTCTTCTTTTAGGGAACATTTCAAAAGAGTTCTAGACAAACATCTTCAGTAATATTTTGAGTAACAAAAAAGCTCTACAACATATTTACTGTATGTGTTTCATGACTGTTTTTACcatattgtatatatttttttaagttcctgcaaataaatataaaaaaatatgatgTTTAATATTGTAAAGTATTGTTAATACTTTGGGTATTTGCAATATAATATTTTAAGATCGTTTTTTTAAACTTAGGGCCATTTCAAAACCTTTCACTGGGCTGCTAAGCTAAGACAAATCTACACTCTTGAATTAATACGTAGTGGAATTTCTGTTAATATCACATTGTAAACATTGTTTTATCGAGGACACAAATAATCCCAACATGCAGTCTTGAAGCGCAGGATTTAAATAGTTTCTCTTATCACAGAAACCTggtcagtgtttttttttaataggGCCTGTTGTGTTATTTCAATAATTTTGCATGGCATTGCTCTGCTACTATGTACTAACCCGTATGTTACATCACTTATTACATGCCCACGGATgcacgcagaaacacacacacacacacacaatggttaTAACCTGTAAATGCTTTTAAAATATCCtgtatgatttatttttttatgacagaaaaataaaataatt

Function

NR:

description
H-2 class I histocompatibility antigen, Q10 alpha chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560530.2 False 2446 mRNA 0.40 9 32891743 32907336
XM_036971766.1 True 2555 mRNA 0.41 11 32891743 32907337

Neighbor

gene id symbol gene type direction distance location
LOC110488326 LOC106569935 coding downstream 1883 32877484 ~ 32889860 (-)
LOC110488325 LOC106569933 coding downstream 29478 32858032 ~ 32862265 (-)
LOC110487589 LOC106569932 coding downstream 36990 32839965 ~ 32854753 (-)
LOC110488324 LOC106569931 coding downstream 52887 32834650 ~ 32838856 (-)
LOC110488321 LOC100380685 coding downstream 228934 32629199 ~ 32662809 (-)
LOC110488328 LOC106569937 coding upstream 3396 32910733 ~ 32915508 (-)
LOC110488332 LOC106569940 coding upstream 8130 32915467 ~ 32923137 (-)
LOC110488329 LOC106569939 coding upstream 16749 32924086 ~ 32930200 (-)
LOC110487591 LOC106569942 coding upstream 35759 32943096 ~ 32974388 (-)
LOC110488333 LOC106569942 coding upstream 50577 32957914 ~ 32960011 (-)
G2320595 NA non-coding downstream 26780 32820833 ~ 32864963 (-)
G2320599 NA non-coding downstream 65623 32824729 ~ 32826120 (-)
G2320560 NA non-coding downstream 109260 32782197 ~ 32782483 (-)
G2320525 NA non-coding downstream 109816 32781010 ~ 32781927 (-)
G2320536 NA non-coding downstream 144862 32746544 ~ 32746881 (-)
G2320618 NA non-coding upstream 1564 32908901 ~ 32909127 (-)
G2320664 NA non-coding upstream 82497 32989834 ~ 32990169 (-)
G2320665 NA non-coding upstream 83054 32990391 ~ 32990619 (-)
G2320666 NA non-coding upstream 83922 32991259 ~ 32991573 (-)
G2320663 NA non-coding upstream 97724 33005061 ~ 33006134 (-)
LOC110488319 LOC106569927 other downstream 304438 32584624 ~ 32587517 (-)
G2319641 NA other downstream 417945 32394868 ~ 32473798 (-)
G2319615 NA other downstream 533163 32358348 ~ 32358580 (-)
LOC110488303 LOC106569912 other downstream 957502 31913237 ~ 31955694 (-)
si:ch211-191i18.4 LOC106569897 other downstream 1268006 31622507 ~ 31623952 (-)
G2320623 NA other upstream 10165 32917502 ~ 32949938 (-)
G2320755 onmy-uea other upstream 455975 33363312 ~ 33395092 (-)
G2320761 NA other upstream 503162 33410499 ~ 33412502 (-)
LOC110488353 NA other upstream 509200 33413400 ~ 33425462 (-)
LOC110488358 LOC106569966 other upstream 583754 33489584 ~ 33494907 (-)

Expression


Co-expression Network