LOC110488328 (LOC106569937)


Basic Information

Item Value
gene id LOC110488328
gene name LOC106569937
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 32910733 ~ 32915508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560531.2
AATGAATAAGCATGAACTCTTTTAAATGTCATTGTTATTTGATGTGATCCATATCCATCCTTTTCCCCTCTGTCACAAGGGCAATCATGATGTCACCAGAGGACAGCAGCACCCTGGAGGGCTTATTGTATGGCAGCCTCCATGGTGACGAGGGGGAGGAGTCAGTGAACCAGGGGAGCAGACAATTAGGAGAGGATCATTCAAAAGCCAGTTCTCCAGCTACAGGCTTAGTAGAGGAGCCGTTGGTGTGTGCCGGCTGCGAGGGACGTGTTTGCGACCGCTTTGTCCTATTGGCTGCAGGGCGGGCGTGGCACGAGGCGTGTCTCCGCTGTAGCCAATGCCAGTGTGAGCTCCAGACGCACCTCACACTCTACTGCCGTGACGGCAGCATCTACTGTCAGCAGGACTACTGCAGGTTATTCAGTGTGGGACGATGTGCCCGCTGCTCCCAGCCAATCCCGTCGTCAGCAATGGTCATGAGGTCTGGTGATCTGACGTTTCACCCTGAATGCTTTTCCTGCCAGGAGTGTGATGTCACTTTGATGCCTGGAAACCTATACAGTCAACACGGGCAGAGCCTGTACTGTCAATCACATTACCATGATGACAGCAGTGCGCCACCCTCTCACAAGCTCCACCTCAAGCAGAGAGAAGgagaaggggaggagtctGTCAGCAGCCCTGAGCCACGACTGGACGATGGTGTTACAGGCGGCCGGGCCCGCAGGCGGACTAAGCGAATAAGAACATGTTTCCGCAGCGAACAGTTGAGAGCCATGGAGTCCTATTTTGCCCTGAAACACAACCCTGATGGCAAGGATTGGAGCTGTCTGTCTCACAGGACCGGTCTGCCCAAGAGAGTGCTTCAGgTGTGGTTCCAGAATGCAAGGGCCAAGCTGAGGCGTTCCCTCTCAGCCGACGAGTCGCAGAGCAACTCACCCGCCCCCCAGAGGTTCGACACCATGGCTACAGCCTCCCCGTCCCTAGTGACCTCCCACCAGTCCTTCCAGACCAGCACCATCGACCAACTGGAGCTCTCTCTGCTCACCGCCCCTCTCAGTGACCCGCCCCAAAGCCCCGCCGACCAATCAGCAGGCTTTAAAGACTCGTTCTTCCTGGACTACAATCCCCAGGGTGCACCAAGGCTCTCCCCTTTGATGACCTATGATTTTGGGGAGTCTGGATTGGGCAGAGAAGGCGATTCTGACTCGGTCAATAATATGGTTGAAGTACCATGTttacattattctggtgagcactACGCTATTTAGTCTTCCAGGACAACAagttatgacagaagagaagctacAAGTGTCTAACTATAATTGACAAAcaaatggcctaccaaatgtcaaaAATGTTAATATGGCCTGCAGAAATGTATCTAAATTATGGGGGAAAGTAGCCTAAGCCAGTAGGCTATGCAGTCCGGTACAGAGTATCAGCAAAACAAATGACTGGAATTATGATGGATCGAACTGCACAGGTAGCCTATCTTTTTCAAGTGAGTTTGACAATCAGATAAAAACATCACCCATGCTATGTGAAACTGAGCCTGCGCAGACCGCGAAAAACAACAGTAAACTGAATTTGATGTTTACATGCTACAGTATCCCGTCGAAGATCAGCATGTCCCAGCCTTCTTATCCGGGTGTCTCATAACCGGGATACAAACCTTTTCGGGTTATTGTAATCAGGATAGGATGTTTTATATGGAGCAACTCAAAAACAGAATACTTGAGTATCCCGAATAATAAGTggatattggtgtgcatgtaGACGTGGTCAAAGTTAGGCATGTTGACGGTACAGCTCCGTGAACTGATAGAATTTTAGTTATAATAATGCTATGGTAAATTAAGCATTTTATGATTATTCCTCGCTCCTTGTTTTGTTCCACGGTTTGTCATGGCTGTTATGATATCAATATGCGCAAGTAGTTTAGAGATGTATAGATGCTTGTGTTTGTTATGATATTGTACACACTGAGTGTCAGGGAATGTGTGTAAGAGCATGTATCTGAATCCCACCACAAATATGACTACGAGCTCTTTGTACTTTAATAAATGGGCTGTATTAACGGATG
>XM_021560532.2
TTTTGGAGTCAAAGAGAAGGGGTTGGACAGAGAATGGTACTGTTTATTCAAGTGCCATAATGCACATTAAGTTGTCATTTTAAAGGGGATATTGTTCAGGGAACCAAAAGAAGTGCATTCTTTCAGGACATCAACACGTCAGGGCAATCATGATGTCACCAGAGGACAGCAGCACCCTGGAGGGCTTATTGTATGGCAGCCTCCATGGTGACGAGGGGGAGGAGTCAGTGAACCAGGGGAGCAGACAATTAGGAGAGGATCATTCAAAAGCCAGTTCTCCAGCTACAGGCTTAGTAGAGGAGCCGTTGGTGTGTGCCGGCTGCGAGGGACGTGTTTGCGACCGCTTTGTCCTATTGGCTGCAGGGCGGGCGTGGCACGAGGCGTGTCTCCGCTGTAGCCAATGCCAGTGTGAGCTCCAGACGCACCTCACACTCTACTGCCGTGACGGCAGCATCTACTGTCAGCAGGACTACTGCAGGTTATTCAGTGTGGGACGATGTGCCCGCTGCTCCCAGCCAATCCCGTCGTCAGCAATGGTCATGAGGTCTGGTGATCTGACGTTTCACCCTGAATGCTTTTCCTGCCAGGAGTGTGATGTCACTTTGATGCCTGGAAACCTATACAGTCAACACGGGCAGAGCCTGTACTGTCAATCACATTACCATGATGACAGCAGTGCGCCACCCTCTCACAAGCTCCACCTCAAGCAGAGAGAAGgagaaggggaggagtctGTCAGCAGCCCTGAGCCACGACTGGACGATGGTGTTACAGGCGGCCGGGCCCGCAGGCGGACTAAGCGAATAAGAACATGTTTCCGCAGCGAACAGTTGAGAGCCATGGAGTCCTATTTTGCCCTGAAACACAACCCTGATGGCAAGGATTGGAGCTGTCTGTCTCACAGGACCGGTCTGCCCAAGAGAGTGCTTCAGgTGTGGTTCCAGAATGCAAGGGCCAAGCTGAGGCGTTCCCTCTCAGCCGACGAGTCGCAGAGCAACTCACCCGCCCCCCAGAGGTTCGACACCATGGCTACAGCCTCCCCGTCCCTAGTGACCTCCCACCAGTCCTTCCAGACCAGCACCATCGACCAACTGGAGCTCTCTCTGCTCACCGCCCCTCTCAGTGACCCGCCCCAAAGCCCCGCCGACCAATCAGCAGGCTTTAAAGACTCGTTCTTCCTGGACTACAATCCCCAGGGTGCACCAAGGCTCTCCCCTTTGATGACCTATGATTTTGGGGAGTCTGGATTGGGCAGAGAAGGCGATTCTGACTCGGTCAATAATATGGTTGAAGTACCATGTttacattattctggtgagcactACGCTATTTAGTCTTCCAGGACAACAagttatgacagaagagaagctacAAGTGTCTAACTATAATTGACAAAcaaatggcctaccaaatgtcaaaAATGTTAATATGGCCTGCAGAAATGTATCTAAATTATGGGGGAAAGTAGCCTAAGCCAGTAGGCTATGCAGTCCGGTACAGAGTATCAGCAAAACAAATGACTGGAATTATGATGGATCGAACTGCACAGGTAGCCTATCTTTTTCAAGTGAGTTTGACAATCAGATAAAAACATCACCCATGCTATGTGAAACTGAGCCTGCGCAGACCGCGAAAAACAACAGTAAACTGAATTTGATGTTTACATGCTACAGTATCCCGTCGAAGATCAGCATGTCCCAGCCTTCTTATCCGGGTGTCTCATAACCGGGATACAAACCTTTTCGGGTTATTGTAATCAGGATAGGATGTTTTATATGGAGCAACTCAAAAACAGAATACTTGAGTATCCCGAATAATAAGTggatattggtgtgcatgtaGACGTGGTCAAAGTTAGGCATGTTGACGGTACAGCTCCGTGAACTGATAGAATTTTAGTTATAATAATGCTATGGTAAATTAAGCATTTTATGATTATTCCTCGCTCCTTGTTTTGTTCCACGGTTTGTCATGGCTGTTATGATATCAATATGCGCAAGTAGTTTAGAGATGTATAGATGCTTGTGTTTGTTATGATATTGTACACACTGAGTGTCAGGGAATGTGTGTAAGAGCATGTATCTGAATCCCACCACAAATATGACTACGAGCTCTTTGTACTTTAATAAATGGGCTGTATTAACGGATG

Function

NR:

description
LIM/homeobox protein Lhx9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560531.2 False 2086 mRNA 0.49 6 32910733 32915148
XM_021560532.2 True 2149 mRNA 0.49 7 32910733 32915508

Neighbor

gene id symbol gene type direction distance location
LOC110488327 LOC106569936 coding downstream 3396 32891743 ~ 32907337 (-)
LOC110488326 LOC106569935 coding downstream 20873 32877484 ~ 32889860 (-)
LOC110488325 LOC106569933 coding downstream 48468 32858032 ~ 32862265 (-)
LOC110487589 LOC106569932 coding downstream 55980 32839965 ~ 32854753 (-)
LOC110488324 LOC106569931 coding downstream 71877 32834650 ~ 32838856 (-)
LOC110488329 LOC106569939 coding upstream 8578 32924086 ~ 32930200 (-)
LOC110487591 LOC106569942 coding upstream 27588 32943096 ~ 32974388 (-)
LOC110488333 LOC106569942 coding upstream 42406 32957914 ~ 32960011 (-)
trnaa-ugc-211 NA coding upstream 47151 32962659 ~ 32962737 (-)
LOC110488334 LOC106569944 coding upstream 91803 33007311 ~ 33020275 (-)
G2320618 NA non-coding downstream 1606 32908901 ~ 32909127 (-)
G2320586 NA non-coding downstream 8245 32900005 ~ 32902488 (-)
G2320595 NA non-coding downstream 45770 32820833 ~ 32864963 (-)
G2320599 NA non-coding downstream 84613 32824729 ~ 32826120 (-)
G2320560 NA non-coding downstream 128250 32782197 ~ 32782483 (-)
G2320664 NA non-coding upstream 74326 32989834 ~ 32990169 (-)
G2320665 NA non-coding upstream 74883 32990391 ~ 32990619 (-)
G2320666 NA non-coding upstream 75751 32991259 ~ 32991573 (-)
G2320663 NA non-coding upstream 89553 33005061 ~ 33006134 (-)
G2320658 LOC100136003 non-coding upstream 133304 33048812 ~ 33049602 (-)
LOC110488319 LOC106569927 other downstream 323428 32584624 ~ 32587517 (-)
G2319641 NA other downstream 436935 32394868 ~ 32473798 (-)
G2319615 NA other downstream 552153 32358348 ~ 32358580 (-)
LOC110488303 LOC106569912 other downstream 976492 31913237 ~ 31955694 (-)
si:ch211-191i18.4 LOC106569897 other downstream 1286996 31622507 ~ 31623952 (-)
G2320623 NA other upstream 1994 32917502 ~ 32949938 (-)
G2320755 onmy-uea other upstream 447804 33363312 ~ 33395092 (-)
G2320761 NA other upstream 494991 33410499 ~ 33412502 (-)
LOC110488353 NA other upstream 501029 33413400 ~ 33425462 (-)
LOC110488358 LOC106569966 other upstream 575583 33489584 ~ 33494907 (-)

Expression


Co-expression Network