LOC110488332 (LOC106569940)


Basic Information

Item Value
gene id LOC110488332
gene name LOC106569940
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 32915467 ~ 32923137 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560536.2
GCTTCCCCAAAAAAACGTTTACAGTGCAGAGGGCtctgtatagctccgcattgacataaTTGGTTGATGGCTCTGAGCTGCTGAGCGAAGCTCAAGaggtatgaatgccctgacttctgcagaggcccgGATCGCAGTAAATGCTGTATGGTCAAAACAGACATCTGAGTGACCATACATACGTTTACCTCATGGAAAAGCAGATGCTCGATATGACGGGTGATTACTTGTCCACAAAAGAACAGCTTCACTTTCTCCAACACCACCCATTGGAGCAACGATAAACAGGGCGTTTTTACAAGCCAATCATGAATCTAATTGGCTCTGCAAAGAAAAGGACACCAACGTGCGTCGTTTGAATTTTGAGCTTGTCTTTTGGTCACGGAAAATATGAGTGTCGGCTGGCAAAGGTGTGGCTTTAACTCAGTGTTGTGAACTAGTATTGGAGGATGCCTCGTCGCGATCCTGACGGCTCTTCTGCAAGCCGGCGCAAGGGTGCAACACCCAAGCGTCGGCCTCCAGCCCCAACCGCGCCTGCTTCAACATCACCGGCAGCACGGCTGAGCGGACCATCAGCCCCTGCAGGTGTAGCTCCCTCCCGGCAAAAGAGGAGGTTTCGCCCTGGCACCCGAGCTCTGATGGAAATTCGAAAGTACCAGAAGAGCACGGACTTGCTTTTGCGCAAGGGACCGTTTGCGCGCCTGGTTCGGGAGGTGTGCCAGACGTATAGCAGGGACTTCATGAGATGGCAGGTGTATGCTCTTCTGGCATTGCAGGAGGCTGCAGAGGCTTTCCTCGTTTTACTGTTTTCCGATGCCTACCTGTGTACCATCCACGCCAAGCGTGTAACGCTATTCCCCCGTGACATTCAGCTTGCCCGGCGAATTCGAGGAGTGGATCATCTCTGAGAACACTCAGATGAGCCATTGAGGTGTGCTGAGGCTTCGCTTGGGACCGAGAATCACACCGGGCAACATTTAGGGAGTTCGATGTTTAAAGTTAACGGCACACCAGTTGAACGACTACAGAGGAGCGGGAACACTGTTTTAGCGTATTATCACAATAATGGTGTGGACATGAGGATTTTTGGAGTCAAAGAGAAGGGGTTGGACAGAGAATGGTACTG
>XM_036971769.1
GCTTCCCCAAAAAAACGTTTACAGTGCAGAGGGCtctgtatagctccgcattgacataaTTGGTTGATGGCTCTGAGCTGCTGAGCGAAGCTCAAGaggtatgaatgccctgacttctgcagaggcccgGATCGCAGTAAATGCTGTATGGTCAAAACAGACATCTGAGTGACCATACATACGTTTACCTCATGGAAAAGCAGATGCTCGATATGACGGGTGATTACTTGTCCACAAAAGAACAGCTTCACTTTCTCCAACACCACCCATTGGAGCAACGATAAACAGGGCGTTTTTACAAGCCAATCATGAATCTAATTGGCTCTGCAAAGAAAAGGACACCAACGTGCGTCGTTTGAATTTTGAGCTTGTCTTTTGGTCACGGAAAATATGAGTGTCGGCTGGCAAAGGTGTGGCTTTAACTCAGTGTTGTGAACTAGTATTGGAGGATGCCTCGTCGCGATCCTGACGGCTCTTCTGCAAGCCGGCGCAAGGGTGCAACACCCAAGCGTCGGCCTCCAGCCCCAACCGCGCCTGCTTCAACATCACCGGCAGCACGGCTGAGCGGACCATCAGCCCCTGCAGGTGTAGCTCCCTCCCGGCAAAAGAGGAGGTTTCGCCCTGGCACCCGAGCTCTGATGGAAATTCGAAAGTACCAGAAGAGCACGGACTTGCTTTTGCGCAAGGGACCGTTTGCGCGCCTGGTTCGGGAGGTGTGCCAGACGTATAGCAGGGACTTCATGAGATGGCAGGTGTATGCTCTTCTGGCATTGCAGGAGGCTGCAGAGGCTTTCCTCGTTTTACTGTTTTCCGATGCCTACCTGTGTACCATCCACGCCAAGCGTGTAACGCTATTCCCCCGTGACATTCAGCTTGCCCGGCGAATTCGAGGAGTGGATCATCTCTGAGAACACTCAGATGAGCCATTGAGCTTTCTGCTGCCTCCTGGCCCCTGATCTACCCGCTTTCCCAGCAGGCAGCGCAGCCAATCCAATCTTCTCACACCTGCCTGAAACAGCTCCTGATGGTCCTGTTTACAGGTGTGCTGAGGCTTCGCTTGGGACCGAGAATCACACCGGGCAACATTTAGGGAGTTCGATGTTTAAAGTTAACGGCACACCAGTTGAACGACTACAGAGGAGCGGGAACACTGTTTTAGCGTATTATCACAATAATGGTGTGGACATGAGGATTTTTGGAGTCAAAGAGAAGGGGTTGGACAGAGAATGGTACTG
>XM_021560534.2
GCTTCCCCAAAAAAACGTTTACAGTGCAGAGGGCtctgtatagctccgcattgacataaTTGGTTGATGGCTCTGAGCTGCTGAGCGAAGCTCAAGaggtatgaatgccctgacttctgcagaggcccgGATCGCAGTAAATGCTGTATGGTCAAAACAGACATCTGAGTGACCATACATACGTTTACCTCATGGAAAAGCAGATGCTCGATATGACGGGTGATTACTTGTCCACAAAAGAACAGCTTCACTTTCTCCAACACCACCCATTGGAGCAACGATAAACAGGGCGTTTTTACAAGCCAATCATGAATCTAATTGGCTCTGCAAAGAAAAGGACACCAACGTGCGTCGTTTGAATTTTGAGCTTGTCTTTTGGTCACGGAAAATATGAGTGTCGGCTGGCAAAGGTGTGGCTTTAACTCAGTGTTGTGAACTAGTATTGGAGGATGCCTCGTCGCGATCCTGACGGCTCTTCTGCAAGCCGGCGCAAGGGTGCAACACCCAAGCGTCGGCCTCCAGCCCCAACCGCGCCTGCTTCAACATCACCGGCAGCACGGCTGAGCGGACCATCAGCCCCTGCAGGTGTAGCTCCCTCCCGGCAAAAGAGGAGGTTTCGCCCTGGCACCCGAGCTCTGATGGAAATTCGAAAGTACCAGAAGAGCACGGACTTGCTTTTGCGCAAGGGACCGTTTGCGCGCCTGGTTCGGGAGGTGTGCCAGACGTATAGCAGGGACTTCATGAGATGGCAGGTGTATGCTCTTCTGGCATTGCAGGAGGCTGCAGAGGCTTTCCTCGTTTTACTGTTTTCCGATGCCTACCTGTGTACCATCCACGCCAAGCGTGTAACGCTATTCCCCCGTGACATTCAGCTTGCCCGGCGAATTCGAGGAGTGGATCATCTCTGAGAACACTCAGATGAGCCATTGAGCCTATGGTGTGGTGTTCCAAGATGCCCCTTTTggctctt

Function

NR:

description
histone H3-like centromeric protein A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560536.2 False 1126 mRNA 0.51 6 32915467 32923137
XM_036971769.1 False 1235 mRNA 0.52 6 32915467 32923137
XM_021560534.2 True 970 mRNA 0.52 6 32915803 32923137

Neighbor

gene id symbol gene type direction distance location
LOC110488327 LOC106569936 coding downstream 8130 32891743 ~ 32907337 (-)
LOC110488326 LOC106569935 coding downstream 25607 32877484 ~ 32889860 (-)
LOC110488325 LOC106569933 coding downstream 53202 32858032 ~ 32862265 (-)
LOC110487589 LOC106569932 coding downstream 60714 32839965 ~ 32854753 (-)
LOC110488324 LOC106569931 coding downstream 76611 32834650 ~ 32838856 (-)
LOC110488329 LOC106569939 coding upstream 949 32924086 ~ 32930200 (-)
LOC110487591 LOC106569942 coding upstream 19959 32943096 ~ 32974388 (-)
LOC110488333 LOC106569942 coding upstream 34777 32957914 ~ 32960011 (-)
trnaa-ugc-211 NA coding upstream 39522 32962659 ~ 32962737 (-)
LOC110488334 LOC106569944 coding upstream 84174 33007311 ~ 33020275 (-)
G2320618 NA non-coding downstream 6340 32908901 ~ 32909127 (-)
G2320586 NA non-coding downstream 12979 32900005 ~ 32902488 (-)
G2320595 NA non-coding downstream 50504 32820833 ~ 32864963 (-)
G2320599 NA non-coding downstream 89347 32824729 ~ 32826120 (-)
G2320560 NA non-coding downstream 132984 32782197 ~ 32782483 (-)
G2320664 NA non-coding upstream 66697 32989834 ~ 32990169 (-)
G2320665 NA non-coding upstream 67254 32990391 ~ 32990619 (-)
G2320666 NA non-coding upstream 68122 32991259 ~ 32991573 (-)
G2320663 NA non-coding upstream 81924 33005061 ~ 33006134 (-)
G2320658 LOC100136003 non-coding upstream 125675 33048812 ~ 33049602 (-)
LOC110488319 LOC106569927 other downstream 328162 32584624 ~ 32587517 (-)
G2319641 NA other downstream 441669 32394868 ~ 32473798 (-)
G2319615 NA other downstream 556887 32358348 ~ 32358580 (-)
LOC110488303 LOC106569912 other downstream 981226 31913237 ~ 31955694 (-)
si:ch211-191i18.4 LOC106569897 other downstream 1291730 31622507 ~ 31623952 (-)
G2320755 onmy-uea other upstream 440175 33363312 ~ 33395092 (-)
G2320761 NA other upstream 487362 33410499 ~ 33412502 (-)
LOC110488353 NA other upstream 493400 33413400 ~ 33425462 (-)
LOC110488358 LOC106569966 other upstream 567954 33489584 ~ 33494907 (-)
G2322234 NA other upstream 1437946 34361083 ~ 34361388 (-)

Expression


Co-expression Network