LOC110488333 (LOC106569942)


Basic Information

Item Value
gene id LOC110488333
gene name LOC106569942
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 32957914 ~ 32960011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110488333
CTTTAGTTACTACATTGCATATGAAAAAATCCAGGGACTAGATTGTATAAGAAGCAATCTTGATTCATTAGGCCATAttctttatttgtttatttggaaATGAAGACCATAAAAATAGTAAAATATTTTAAGATAAGAGTTATACAGTcatgaaataacaaataaatgGTGAACTAAGGAGAAGAagcaggggagaaagagaaagtcaTCATTAtgtttaaaagagagagaaatctCTGAAACAAATTGGATTCCCTGGCAATGTGAATGAATATGCAAGAGAGGCCAGCCCTGCTCCTGTGAACTGTTATCCCACTAAAGTTAACGTGTCTAGACACGTCATTATTCAATAGAGCAGGTCATTGGAAGTGAAATTAAAATAGCTTGAAATGAATCGAGGTACAGTATAAAAACTGCTCCTGGAGCTAACCTGATCTCTctttgtaaaatatattttatttttcatttttcattctctctttctcgacAGTAGCGGCACACACTTAACTCACAACATTGAATATTTCAGCACCCGAACAATGAATGGCAAGGTTGTTTTGATGACCAAATGTAGTACTCTTTCCACTTCTCCCTGCAGGTTTGGACAGCACATAGGGCAACTATTTATTGCACTAATGTCAATGCAGGTGTTGTTGGAAAACAGGATAATTCAAAGTGTTCAGTTGAAAGATAATATTTTTTGATTTTTCCATTTGGATCTAACAGTGCTTCCCTCTTGTAGTCGGATCAAAAAAACATATTGTTTTCTTTGGTTCCAAATGATCGCTTCATGCAATATCCAACAATATCCAGGGTGACCATGGACACTGTAACCATGCAGGTAGCACCAGGAGTAGCAAGCCAGGAAGACCCAGCAGGGAATACAAAGCCTGTGAAGGCCATCTACTACTCAAAAGCCAAGGGTGAAGAACCAGAGAGTGGAAAGAATAGGAGTGGACCGGGCTCTGTAACAGTCAAAGGCTCCAATGGAACCAAACAGGACCCATCTGTCACAACCAGTACAAGACCACTTGTCAACACAAAATACAGGGTTGTACATAAACCAGGTGATAGAATAACCTTGCCCAGGAAGCCATACATTGGAGACTCTATCCGTTTTAATGGTACAAGTGTAAGCAAGGGTGGGAGCAGAGTGGGTCACAGTCTTCTGAAAAAGCCTTCAAGCAGAAACTCATTGGTGGGGCCAAAGGTCACGGATGCCTTAAAAACTGACACTAAAAcagaaaatcccattgttggGGACAGGACTAGTTATAACTGTGAAAAACACTAAGCTGAAGACATGTCCTCTTGGAGAAAAAGATAGAACTTCGACAAAGCCATATCCTGTTGGAATCCTTCCTGAAAATGCCACTCCGAGTTCTGGTTCTGAACAACCAAAAGTGATTCCCGGCTTAAAGGACCTACCTGATAGAAAAATGGGTACAGAGACTGAAACAAATGAGCCAGGGCAAGGGACAGATGGCTTGGAGCCTACAACCACATCAGAAACAAATACTACTGTTCACCTGAACGTTAAGAAATGTGTCAACAAGATTAAATTGACACACAGGAAAGTCAATGTGACCTGTAGAGAGAGAGTCATTGGGGGAGGGTGAATGGCACAATAGTTCATAGTACACCCACAACAGGGCAAGGTTTTGCTGAAAATGAGGACAGTGCCCTAAAAGTGTCTGAAACAGGACATTCAAAAACAGCATACTCATACTCAGATAAAGATAATGTTGCAGAAGTGGGTAtcaacagagatggagagaaaacaactgATGTGGGATTGTTTGGAACCAAACAAAACGAGACAAAGACTGAGAGTGGGCGGCTCACCACCTCTTCGCCGCCTCACTCCAAAGGGCCCCTAACCAACACCGCCCATACCTAAATATGAGACCATTCCTAAACAGGACACGTTCACCTTCTTCAGCTCCCACAAAACTAAATGAATCAAAGACCGGTATGGGTCAACCCAAAACTGACAAACAAGTGGTGTTTGCAAAGACATTGCCTGTTTCCCAATCCTCAACCCTCCATCCAGATGCTCAGCCAGAGAGGGCACCAAAATCATCCATTGAATCAGAAC

Function

NR:

description
tenascin XB-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110488333 True 2098 mRNA 0.41 1 32957914 32960011

Neighbor

gene id symbol gene type direction distance location
LOC110488329 LOC106569939 coding downstream 27714 32924086 ~ 32930200 (-)
LOC110488332 LOC106569940 coding downstream 34777 32915467 ~ 32923137 (-)
LOC110488328 LOC106569937 coding downstream 42406 32910733 ~ 32915508 (-)
LOC110488327 LOC106569936 coding downstream 50577 32891743 ~ 32907337 (-)
LOC110488326 LOC106569935 coding downstream 68054 32877484 ~ 32889860 (-)
trnaa-ugc-211 NA coding upstream 2648 32962659 ~ 32962737 (-)
LOC110488334 LOC106569944 coding upstream 47300 33007311 ~ 33020275 (-)
LOC110488337 vps52 coding upstream 92386 33052397 ~ 33061264 (-)
LOC110488338 rng2a coding upstream 104829 33064840 ~ 33068255 (-)
LOC118946532 NA coding upstream 186502 33146513 ~ 33152363 (-)
G2320618 NA non-coding downstream 48787 32908901 ~ 32909127 (-)
G2320586 NA non-coding downstream 55426 32900005 ~ 32902488 (-)
G2320595 NA non-coding downstream 92951 32820833 ~ 32864963 (-)
G2320599 NA non-coding downstream 131794 32824729 ~ 32826120 (-)
G2320560 NA non-coding downstream 175431 32782197 ~ 32782483 (-)
G2320664 NA non-coding upstream 29823 32989834 ~ 32990169 (-)
G2320665 NA non-coding upstream 30380 32990391 ~ 32990619 (-)
G2320666 NA non-coding upstream 31248 32991259 ~ 32991573 (-)
G2320663 NA non-coding upstream 45050 33005061 ~ 33006134 (-)
G2320658 LOC100136003 non-coding upstream 88801 33048812 ~ 33049602 (-)
G2320623 NA other downstream 7976 32917502 ~ 32949938 (-)
LOC110488319 LOC106569927 other downstream 370609 32584624 ~ 32587517 (-)
G2319641 NA other downstream 484116 32394868 ~ 32473798 (-)
G2319615 NA other downstream 599334 32358348 ~ 32358580 (-)
LOC110488303 LOC106569912 other downstream 1023673 31913237 ~ 31955694 (-)
G2320755 onmy-uea other upstream 403301 33363312 ~ 33395092 (-)
G2320761 NA other upstream 450488 33410499 ~ 33412502 (-)
LOC110488353 NA other upstream 456526 33413400 ~ 33425462 (-)
LOC110488358 LOC106569966 other upstream 531080 33489584 ~ 33494907 (-)
G2322234 NA other upstream 1401072 34361083 ~ 34361388 (-)

Expression


Co-expression Network